Wall clock time and date at job start Tue Mar 31 2020 11:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38271 * 119.93588 * 2 1 4 4 C 1.38092 * 120.10082 * 179.72073 * 3 2 1 5 5 C 1.38955 * 119.97471 * 0.51627 * 4 3 2 6 6 N 1.39665 * 120.06488 * 179.76809 * 5 4 3 7 7 C 1.46498 * 119.99668 * 359.71625 * 6 5 4 8 8 H 1.08999 * 109.47579 * 35.00369 * 7 6 5 9 9 C 1.53001 * 109.47382 * 275.00304 * 7 6 5 10 10 C 1.50701 * 109.46820 * 155.00256 * 7 6 5 11 11 C 1.38303 * 119.92948 * 39.73181 * 10 7 6 12 12 C 1.38107 * 120.06814 * 179.72518 * 11 10 7 13 13 C 1.38879 * 119.92636 * 0.54442 * 12 11 10 14 14 O 1.35755 * 120.06619 * 179.75334 * 13 12 11 15 15 C 1.34828 * 116.99950 * 174.44253 * 14 13 12 16 16 H 1.08004 * 120.00141 * 5.05146 * 15 14 13 17 17 C 1.38654 * 119.99714 * 185.05116 * 15 14 13 18 18 N 1.31555 * 120.00092 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99584 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47591 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47097 * 120.00283 * 19 17 15 22 22 H 1.48510 * 109.46823 * 240.00048 * 19 17 15 23 23 C 1.38880 * 119.86675 * 359.72598 * 13 12 11 24 24 C 1.38105 * 119.92848 * 0.02562 * 23 13 12 25 25 C 1.38851 * 119.87144 * 359.48569 * 5 4 3 26 26 C 1.38344 * 119.90472 * 0.25568 * 25 5 4 27 27 F 1.35098 * 119.98844 * 180.02562 * 26 25 5 28 28 H 1.09002 * 109.47475 * 270.01450 * 1 2 3 29 29 H 1.08998 * 109.47465 * 30.01863 * 1 2 3 30 30 H 1.09002 * 109.47526 * 150.02225 * 1 2 3 31 31 H 1.08009 * 119.95248 * 359.96118 * 3 2 1 32 32 H 1.08004 * 120.01479 * 180.25400 * 4 3 2 33 33 H 0.96996 * 120.00213 * 179.72188 * 6 5 4 34 34 H 1.09000 * 109.47279 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.47276 * 300.00260 * 9 7 6 36 36 H 1.08997 * 109.47138 * 60.00180 * 9 7 6 37 37 H 1.07997 * 119.96517 * 359.97438 * 11 10 7 38 38 H 1.07998 * 120.03540 * 180.27184 * 12 11 10 39 39 H 0.97004 * 119.99320 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.03479 * 179.97438 * 23 13 12 41 41 H 1.07996 * 119.96156 * 180.02562 * 24 23 13 42 42 H 1.08000 * 120.04475 * 180.23589 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1982 0.0000 4 6 3.5778 1.2022 0.0058 5 6 4.2756 0.0006 0.0008 6 7 5.6722 0.0024 0.0018 7 6 6.4030 1.2721 0.0018 8 1 5.8543 2.0072 0.5906 9 6 6.5494 1.7764 -1.4353 10 6 7.7692 1.0654 0.6033 11 6 8.4836 -0.0831 0.3146 12 6 9.7383 -0.2729 0.8597 13 6 10.2776 0.6858 1.7075 14 8 11.5086 0.4997 2.2489 15 6 12.0208 1.5180 2.9690 16 1 11.4235 2.3969 3.1621 17 6 13.3143 1.4368 3.4617 18 7 14.0416 0.3660 3.2269 19 14 14.0242 2.8479 4.4588 20 1 13.0116 3.9274 4.5796 21 1 14.3933 2.3611 5.8123 22 1 15.2324 3.3774 3.7766 23 6 9.5554 1.8354 1.9999 24 6 8.3034 2.0217 1.4475 25 6 3.5816 -1.2021 0.0008 26 6 2.1982 -1.2001 0.0004 27 9 1.5212 -2.3692 0.0009 28 1 -0.3634 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6551 2.1326 -0.0006 32 1 4.1154 2.1390 0.0100 33 1 6.1584 -0.8369 0.0024 34 1 7.0935 2.7209 -1.4353 35 1 7.0981 1.0414 -2.0241 36 1 5.5612 1.9259 -1.8703 37 1 8.0616 -0.8305 -0.3409 38 1 10.2975 -1.1680 0.6305 39 1 14.9467 0.3095 3.5713 40 1 9.9721 2.5825 2.6591 41 1 7.7415 2.9157 1.6742 42 1 4.1211 -2.1377 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037213134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:55 Heat of formation + Delta-G solvation = -43.780924 kcal Electronic energy + Delta-G solvation = -24549.103276 eV Core-core repulsion = 20794.136246 eV Total energy + Delta-G solvation = -3754.967030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.85683 -41.05301 -40.31845 -38.80355 -36.75091 -34.37366 -33.56408 -31.92368 -31.38432 -30.91723 -29.42143 -27.38711 -26.72579 -24.41792 -23.77555 -23.61025 -22.27776 -21.28796 -19.84532 -18.96580 -18.75655 -17.77919 -17.01509 -16.64187 -16.53320 -16.26840 -16.11276 -15.80300 -15.57115 -15.45534 -14.95284 -14.77683 -14.47450 -14.39956 -14.18292 -14.06973 -13.98466 -13.63117 -13.51926 -13.17911 -13.01151 -12.88726 -12.69019 -12.44212 -12.35159 -12.12583 -12.11196 -12.05101 -11.74512 -11.20124 -10.84753 -10.73974 -9.82141 -9.71733 -8.96049 -8.48816 -8.30451 -6.16927 0.32951 0.53717 0.55604 0.63295 1.34999 1.42830 1.53165 2.16430 2.39686 2.77965 2.81991 3.14382 3.46201 3.49637 3.78284 3.88655 4.03238 4.07437 4.13993 4.20292 4.38213 4.42839 4.45086 4.52262 4.59024 4.71190 4.79755 4.85875 4.91313 4.95615 5.01574 5.10132 5.16398 5.17249 5.24303 5.28235 5.36589 5.41118 5.51704 5.58458 5.68997 5.69620 5.95336 6.01196 6.16090 6.40659 6.75976 6.96172 7.76547 8.74516 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029073 B = 0.002247 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.845512 B =12459.250636 C =12690.456583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.194 4.194 3 C -0.041 4.041 4 C -0.209 4.209 5 C 0.239 3.761 6 N -0.734 5.734 7 C 0.210 3.790 8 H 0.097 0.903 9 C -0.158 4.158 10 C -0.166 4.166 11 C -0.058 4.058 12 C -0.203 4.203 13 C 0.114 3.886 14 O -0.233 6.233 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.250 1.250 21 H -0.270 1.270 22 H -0.269 1.269 23 C -0.239 4.239 24 C -0.056 4.056 25 C -0.248 4.248 26 C 0.121 3.879 27 F -0.150 7.150 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.272 0.728 40 H 0.120 0.880 41 H 0.147 0.853 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.130 4.701 -7.844 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.197 4.197 3 C -0.060 4.060 4 C -0.231 4.231 5 C 0.134 3.866 6 N -0.362 5.362 7 C 0.106 3.894 8 H 0.115 0.885 9 C -0.216 4.216 10 C -0.167 4.167 11 C -0.076 4.076 12 C -0.222 4.222 13 C 0.063 3.937 14 O -0.139 6.139 15 C -0.488 4.488 16 H 0.121 0.879 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.173 1.173 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.259 4.259 24 C -0.074 4.074 25 C -0.271 4.271 26 C 0.102 3.898 27 F -0.129 7.129 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.237 0.763 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.160 0.840 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.165 0.835 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.705 4.573 -7.814 25.375 hybrid contribution 1.217 -0.679 0.575 1.508 sum -22.488 3.894 -7.239 23.943 Atomic orbital electron populations 1.20614 0.89331 1.03333 1.02679 1.19949 0.97848 0.91660 1.10262 1.20960 0.93174 0.97494 0.94324 1.21015 0.94710 0.96939 1.10457 1.17610 0.83930 0.93202 0.91868 1.45020 1.01972 1.08508 1.80668 1.19585 0.87524 0.85893 0.96444 0.88541 1.22236 1.02516 1.01671 0.95204 1.19689 0.97634 0.96380 1.03028 1.20670 0.91936 0.97317 0.97721 1.20427 0.98599 1.00309 1.02894 1.19975 0.86167 0.94986 0.92523 1.83947 1.27855 1.41233 1.60875 1.21868 0.98622 0.97493 1.30804 0.87904 1.26608 0.95259 1.01342 0.98991 1.70192 1.10382 1.29817 1.45511 0.84520 0.78503 0.76117 0.77023 1.17272 1.19478 1.19411 1.21264 0.97850 0.99392 1.07357 1.20928 0.93440 0.98927 0.94135 1.20524 0.92657 0.98509 1.15441 1.17444 0.89533 0.81013 1.01834 1.91430 1.80400 1.47111 1.93940 0.91101 0.89557 0.92434 0.82491 0.83789 0.76260 0.91084 0.92907 0.91083 0.84034 0.87053 0.91860 0.86181 0.83517 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.83 71.23 0.70 -0.70 16 2 C -0.19 -3.53 5.89 -19.80 -0.12 -3.64 16 3 C -0.04 -0.62 9.69 22.24 0.22 -0.41 16 4 C -0.21 -3.53 8.86 22.41 0.20 -3.33 16 5 C 0.24 4.80 6.64 38.21 0.25 5.05 16 6 N -0.73 -14.51 5.20 -322.53 -1.68 -16.19 16 7 C 0.21 4.16 2.47 44.25 0.11 4.27 16 8 H 0.10 1.68 6.33 -2.39 -0.02 1.66 16 9 C -0.16 -2.77 9.42 71.98 0.68 -2.09 16 10 C -0.17 -4.56 4.96 -19.83 -0.10 -4.66 16 11 C -0.06 -1.78 9.05 22.25 0.20 -1.58 16 12 C -0.20 -8.27 9.99 22.39 0.22 -8.04 16 13 C 0.11 5.49 6.65 22.58 0.15 5.64 16 14 O -0.23 -13.77 9.76 -22.77 -0.22 -13.99 16 15 C -0.41 -23.56 9.49 67.92 0.64 -22.92 16 16 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 17 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 18 N -0.92 -56.13 13.67 21.61 0.30 -55.84 16 19 Si 1.02 42.21 29.55 68.60 2.03 44.23 16 20 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 C -0.24 -9.84 9.17 22.39 0.21 -9.64 16 24 C -0.06 -1.73 9.66 22.25 0.21 -1.52 16 25 C -0.25 -5.35 9.87 22.44 0.22 -5.13 16 26 C 0.12 2.68 7.24 22.36 0.16 2.84 16 27 F -0.15 -3.56 16.47 44.97 0.74 -2.82 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.06 0.84 7.63 -2.39 -0.02 0.82 16 31 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.14 1.95 6.14 -2.91 -0.02 1.93 16 33 H 0.40 7.87 6.86 -92.71 -0.64 7.23 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.07 7.75 -2.39 -0.02 1.05 16 37 H 0.14 3.38 6.89 -2.91 -0.02 3.36 16 38 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 41 H 0.15 3.44 8.03 -2.91 -0.02 3.42 16 42 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -69.52 355.80 6.02 -63.51 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.42 Total: 27.87 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 4.43 Total: -46.77 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -1.38 Total: -72.03 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.22 Total: -13.99 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.74 Total: -2.82 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -69.52 6.02 -63.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037213134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.726 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds