Wall clock time and date at job start Tue Mar 31 2020 11:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38136 * 120.02824 * 2 1 4 4 C 1.38447 * 120.05237 * 180.25413 * 3 2 1 5 5 F 1.35097 * 119.95262 * 179.76372 * 4 3 2 6 6 C 1.38487 * 120.09459 * 359.74714 * 4 3 2 7 7 C 1.38099 * 120.05146 * 359.97438 * 6 4 3 8 8 C 1.38864 * 120.02500 * 179.73953 * 2 1 3 9 9 N 1.39824 * 120.04492 * 0.02834 * 8 2 1 10 10 C 1.46505 * 119.99415 * 179.44195 * 9 8 2 11 11 H 1.08995 * 109.47180 * 35.27702 * 10 9 8 12 12 C 1.52992 * 109.47419 * 275.27125 * 10 9 8 13 13 C 1.50709 * 109.46680 * 155.27227 * 10 9 8 14 14 C 1.38301 * 119.92830 * 39.72785 * 13 10 9 15 15 C 1.38101 * 120.06470 * 179.72317 * 14 13 10 16 16 C 1.38880 * 119.92963 * 0.54364 * 15 14 13 17 17 O 1.35749 * 120.06581 * 179.74603 * 16 15 14 18 18 C 1.34835 * 116.99484 * 174.44537 * 17 16 15 19 19 H 1.07999 * 120.00534 * 5.06012 * 18 17 16 20 20 C 1.38660 * 119.99532 * 185.05351 * 18 17 16 21 21 N 1.31553 * 120.00194 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46761 * 90.00337 * 22 20 18 24 24 H 1.48499 * 109.47244 * 210.00777 * 22 20 18 25 25 H 1.48500 * 109.46948 * 330.00496 * 22 20 18 26 26 C 1.38876 * 119.86470 * 359.73453 * 16 15 14 27 27 C 1.38102 * 119.92917 * 359.97438 * 26 16 15 28 28 H 1.09008 * 109.47377 * 270.25651 * 1 2 3 29 29 H 1.08996 * 109.47105 * 30.25745 * 1 2 3 30 30 H 1.09000 * 109.47144 * 150.25731 * 1 2 3 31 31 H 1.08002 * 119.97552 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.97054 * 179.97438 * 6 4 3 33 33 H 1.08002 * 120.01969 * 179.97438 * 7 6 4 34 34 H 0.97000 * 120.00154 * 359.71730 * 9 8 2 35 35 H 1.08998 * 109.47534 * 180.02562 * 12 10 9 36 36 H 1.08995 * 109.47416 * 300.00433 * 12 10 9 37 37 H 1.09007 * 109.47079 * 60.00014 * 12 10 9 38 38 H 1.07997 * 119.96767 * 0.02562 * 14 13 10 39 39 H 1.07999 * 120.03298 * 180.27407 * 15 14 13 40 40 H 0.97005 * 120.00092 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.03572 * 179.97438 * 26 16 15 42 42 H 1.08005 * 119.96824 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5827 1.1965 -0.0053 5 9 4.2567 2.3674 -0.0101 6 6 4.2776 -0.0013 -0.0054 7 6 3.5907 -1.1994 0.0004 8 6 2.2018 -1.2023 0.0055 9 7 1.5042 -2.4140 0.0104 10 6 2.2383 -3.6818 0.0038 11 1 3.1511 -3.5762 0.5900 12 6 2.5971 -4.0560 -1.4356 13 6 1.3779 -4.7636 0.6045 14 6 0.0251 -4.8069 0.3201 15 6 -0.7648 -5.8002 0.8644 16 6 -0.2016 -6.7497 1.7071 17 8 -0.9766 -7.7243 2.2478 18 6 -0.3485 -8.6795 2.9627 19 1 0.7118 -8.6025 3.1527 20 6 -1.0642 -9.7607 3.4542 21 7 -2.3557 -9.8547 3.2225 22 14 -0.1942 -11.0838 4.4453 23 1 -0.2268 -10.7249 5.8859 24 1 -0.8807 -12.3851 4.2436 25 1 1.2163 -11.1932 3.9941 26 6 1.1560 -6.7001 1.9953 27 6 1.9418 -5.7077 1.4431 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6583 2.1313 0.0004 32 1 5.3576 0.0015 -0.0099 33 1 4.1332 -2.1333 0.0000 34 1 0.5342 -2.4152 0.0141 35 1 3.1429 -4.9995 -1.4406 36 1 1.6843 -4.1617 -2.0219 37 1 3.2193 -3.2736 -1.8701 38 1 -0.4129 -4.0660 -0.3322 39 1 -1.8203 -5.8361 0.6385 40 1 -2.8563 -10.6113 3.5660 41 1 1.5968 -7.4367 2.6507 42 1 2.9978 -5.6688 1.6665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037213963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:38 Heat of formation + Delta-G solvation = -26.473621 kcal Electronic energy + Delta-G solvation = -24771.171405 eV Core-core repulsion = 21016.954876 eV Total energy + Delta-G solvation = -3754.216529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.74983 -39.98455 -39.10498 -37.33330 -35.29287 -33.07498 -32.40126 -31.32318 -30.35159 -28.44014 -28.11962 -26.87263 -25.50338 -23.51565 -22.29240 -22.10350 -21.24334 -20.11846 -18.14871 -17.72553 -17.24711 -16.91938 -16.37429 -15.54122 -15.22782 -15.12088 -14.57573 -14.33675 -14.20947 -13.97194 -13.78408 -13.51578 -13.43289 -13.39158 -13.20070 -12.86636 -12.74081 -12.59962 -12.27395 -12.06022 -11.93210 -11.75255 -11.56245 -11.30393 -10.96444 -10.89203 -10.80209 -10.53701 -10.50606 -9.95368 -9.44620 -9.01431 -8.91765 -8.33076 -7.34959 -7.30930 -6.53859 -4.12952 1.13926 1.33540 2.07172 2.12899 3.07079 3.08286 3.13137 3.42092 3.57946 3.89296 4.32545 4.42334 4.59534 4.68771 4.89326 5.00337 5.00783 5.14275 5.19094 5.24783 5.33879 5.41243 5.45160 5.49020 5.55281 5.63790 5.70967 5.82661 5.82976 5.98051 6.04920 6.08437 6.16165 6.20513 6.26058 6.31109 6.53803 6.71144 6.78018 6.93077 7.04568 7.19520 7.31933 7.35369 7.66135 7.70087 7.90521 8.91538 9.59723 10.63755 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002372 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.358531 B =11803.082453 C =12129.473024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.142 4.142 3 C -0.104 4.104 4 C 0.027 3.973 5 F -0.151 7.151 6 C -0.106 4.106 7 C -0.173 4.173 8 C 0.220 3.780 9 N -0.731 5.731 10 C 0.204 3.796 11 H 0.078 0.922 12 C -0.161 4.161 13 C -0.195 4.195 14 C -0.067 4.067 15 C -0.190 4.190 16 C 0.156 3.844 17 O -0.175 6.175 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.231 4.231 27 C -0.059 4.059 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.129 0.871 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 16.050 -7.050 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.147 4.147 3 C -0.123 4.123 4 C 0.006 3.994 5 F -0.130 7.130 6 C -0.126 4.126 7 C -0.196 4.196 8 C 0.115 3.885 9 N -0.361 5.361 10 C 0.099 3.901 11 H 0.096 0.904 12 C -0.220 4.220 13 C -0.196 4.196 14 C -0.085 4.085 15 C -0.209 4.209 16 C 0.102 3.898 17 O -0.078 6.078 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.250 4.250 27 C -0.077 4.077 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.239 0.761 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.987 15.671 -6.991 19.370 hybrid contribution 0.249 -0.522 0.536 0.789 sum 9.236 15.149 -6.455 18.880 Atomic orbital electron populations 1.20619 0.90742 1.02574 1.02437 1.19173 0.96053 0.90890 1.08549 1.20707 0.92129 0.98318 1.01176 1.17374 0.90014 0.81147 1.10899 1.91440 1.80452 1.46275 1.94844 1.20846 1.00215 0.90863 1.00660 1.20528 0.92121 0.98100 1.08824 1.17732 0.91323 0.86004 0.93475 1.45211 1.08460 1.02039 1.80366 1.19566 0.93893 0.81165 0.95473 0.90423 1.22272 1.01874 1.01354 0.96498 1.19188 0.94267 1.00239 1.05930 1.20288 0.92859 0.96913 0.98469 1.20177 1.00130 0.97692 1.02912 1.19400 0.89934 0.89567 0.90947 1.83980 1.33914 1.31323 1.58535 1.21342 0.94497 1.00141 1.30977 0.88973 1.25312 0.95762 0.97695 0.97699 1.70034 1.06493 1.30350 1.42580 0.85702 0.79015 0.79235 0.79440 1.19803 1.20179 1.19140 1.21149 0.94151 1.02668 1.07028 1.20532 0.98334 0.93784 0.95083 0.91123 0.91350 0.91848 0.85225 0.85221 0.85011 0.76139 0.91610 0.92279 0.92736 0.87518 0.86438 0.91895 0.85383 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.57 36.00 0.34 -0.58 16 2 C -0.14 -1.50 5.90 -104.43 -0.62 -2.12 16 3 C -0.10 -1.10 9.68 -39.54 -0.38 -1.48 16 4 C 0.03 0.31 7.30 -39.41 -0.29 0.02 16 5 F -0.15 -1.83 17.26 2.25 0.04 -1.79 16 6 C -0.11 -1.12 10.02 -39.54 -0.40 -1.52 16 7 C -0.17 -1.86 8.84 -39.39 -0.35 -2.21 16 8 C 0.22 2.49 6.62 -83.74 -0.55 1.94 16 9 N -0.73 -8.32 5.10 -53.26 -0.27 -8.59 16 10 C 0.20 2.45 2.47 -69.08 -0.17 2.28 16 11 H 0.08 0.89 6.35 -51.93 -0.33 0.56 16 12 C -0.16 -1.77 9.40 37.15 0.35 -1.42 16 13 C -0.19 -2.97 4.96 -104.57 -0.52 -3.48 16 14 C -0.07 -1.07 9.05 -39.61 -0.36 -1.43 16 15 C -0.19 -3.74 9.99 -39.39 -0.39 -4.14 16 16 C 0.16 3.58 6.65 -39.11 -0.26 3.32 16 17 O -0.17 -4.81 9.76 0.04 0.00 -4.81 16 18 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 22 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.23 -4.71 9.17 -39.39 -0.36 -5.07 16 27 C -0.06 -0.98 9.66 -39.61 -0.38 -1.37 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.13 1.27 6.12 -52.49 -0.32 0.95 16 34 H 0.40 4.41 4.84 -40.82 -0.20 4.21 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.54 7.70 -51.93 -0.40 0.14 16 38 H 0.11 1.40 6.89 -52.49 -0.36 1.04 16 39 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 42 H 0.11 1.52 8.03 -52.48 -0.42 1.10 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -29.37 353.23 -8.34 -37.71 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.03 Total: 7.75 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -4.14 Total: -26.64 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.49 Total: -32.46 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: 0.00 Total: -4.81 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.37 -8.34 -37.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037213963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.236 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds