Wall clock time and date at job start Tue Mar 31 2020 11:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38275 * 119.92728 * 2 1 4 4 C 1.38145 * 120.11381 * 180.02562 * 3 2 1 5 5 C 1.38825 * 119.95504 * 359.97438 * 4 3 2 6 6 N 1.39845 * 120.08352 * 180.02562 * 5 4 3 7 7 C 1.46496 * 119.99834 * 0.02562 * 6 5 4 8 8 H 1.09000 * 109.47400 * 325.00245 * 7 6 5 9 9 C 1.53000 * 109.46881 * 84.99961 * 7 6 5 10 10 C 1.50701 * 109.47336 * 205.00054 * 7 6 5 11 11 C 1.38306 * 119.92427 * 319.72770 * 10 7 6 12 12 C 1.38105 * 120.06255 * 179.72245 * 11 10 7 13 13 C 1.38874 * 119.93318 * 0.55045 * 12 11 10 14 14 O 1.35750 * 120.07073 * 179.74911 * 13 12 11 15 15 C 1.34835 * 116.99867 * 174.44388 * 14 13 12 16 16 H 1.07994 * 120.00154 * 5.05131 * 15 14 13 17 17 C 1.38652 * 119.99860 * 185.05425 * 15 14 13 18 18 N 1.31560 * 119.99712 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00102 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47050 * 59.99924 * 19 17 15 21 21 H 1.48499 * 109.47103 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46949 * 299.99853 * 19 17 15 23 23 C 1.38883 * 119.86028 * 359.72491 * 13 12 11 24 24 C 1.38097 * 119.93116 * 359.97438 * 23 13 12 25 25 C 1.39081 * 119.83630 * 0.27980 * 5 4 3 26 26 F 1.35098 * 120.05483 * 179.70044 * 25 5 4 27 27 C 1.38283 * 119.88891 * 359.42132 * 25 5 4 28 28 H 1.09005 * 109.46928 * 89.99509 * 1 2 3 29 29 H 1.09000 * 109.47392 * 210.00149 * 1 2 3 30 30 H 1.09000 * 109.46522 * 330.00335 * 1 2 3 31 31 H 1.08004 * 119.93530 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.02038 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99501 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47517 * 299.99849 * 9 7 6 35 35 H 1.09000 * 109.47323 * 60.00246 * 9 7 6 36 36 H 1.09005 * 109.46879 * 179.97438 * 9 7 6 37 37 H 1.08001 * 119.96804 * 0.02562 * 11 10 7 38 38 H 1.07999 * 120.03359 * 180.27560 * 12 11 10 39 39 H 0.97003 * 119.99765 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.03371 * 179.97438 * 23 13 12 41 41 H 1.08004 * 119.96769 * 180.02562 * 24 23 13 42 42 H 1.07996 * 119.97893 * 180.29535 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5783 1.2029 -0.0005 5 6 4.2754 0.0023 -0.0005 6 7 5.6738 0.0037 -0.0005 7 6 6.4050 1.2732 0.0000 8 1 5.8569 2.0085 -0.5890 9 6 6.5506 1.7772 1.4373 10 6 7.7716 1.0661 -0.6005 11 6 8.4901 -0.0774 -0.3026 12 6 9.7403 -0.2728 -0.8558 13 6 10.2806 0.6857 -1.7031 14 8 11.5114 0.4989 -2.2445 15 6 11.9280 1.4102 -3.1467 16 1 11.3269 2.2845 -3.3482 17 6 13.1280 1.2247 -3.8160 18 7 13.8604 0.1598 -3.5702 19 14 13.7049 2.4867 -5.0665 20 1 13.8648 3.8050 -4.4018 21 1 15.0077 2.0590 -5.6366 22 1 12.7010 2.5997 -6.1549 23 6 9.5589 1.8357 -1.9958 24 6 8.3067 2.0223 -1.4443 25 6 3.5795 -1.2019 -0.0059 26 9 4.2535 -2.3727 -0.0120 27 6 2.1967 -1.1987 0.0009 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6546 2.1324 -0.0004 32 1 4.1156 2.1397 -0.0010 33 1 6.1596 -0.8359 -0.0009 34 1 5.5622 1.9270 1.8717 35 1 7.0987 1.0420 2.0264 36 1 7.0950 2.7215 1.4378 37 1 8.0710 -0.8207 0.3596 38 1 10.2991 -1.1681 -0.6264 39 1 14.6998 0.0298 -4.0387 40 1 9.9766 2.5831 -2.6540 41 1 7.7447 2.9162 -1.6718 42 1 1.6549 -2.1329 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:58 Heat of formation + Delta-G solvation = -28.117273 kcal Electronic energy + Delta-G solvation = -24770.637326 eV Core-core repulsion = 21016.349523 eV Total energy + Delta-G solvation = -3754.287803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.76542 -39.75371 -39.06509 -37.46607 -35.63397 -32.73535 -32.12952 -30.74220 -30.38110 -29.86710 -28.09222 -26.00435 -25.46297 -23.49912 -22.51054 -22.15732 -21.20326 -20.05260 -18.16628 -17.77599 -17.20854 -16.79879 -16.28662 -15.63050 -15.13696 -15.02944 -14.55862 -14.39954 -14.16935 -13.91842 -13.76821 -13.71460 -13.54311 -13.39549 -13.29380 -12.81328 -12.67331 -12.31247 -12.25890 -12.02178 -11.82487 -11.73436 -11.61747 -11.27200 -11.06874 -10.84339 -10.80002 -10.53955 -10.49532 -10.00909 -9.42217 -8.91324 -8.89010 -8.29875 -7.36361 -7.28776 -6.51338 -4.10542 1.14361 1.34744 2.10498 2.15362 3.09126 3.10178 3.13373 3.39675 3.57496 3.91327 4.23962 4.45091 4.60437 4.73822 4.92293 5.01609 5.04611 5.16103 5.19168 5.24367 5.38217 5.41324 5.43070 5.50307 5.57383 5.66522 5.71073 5.82373 5.85244 5.95338 5.99598 6.10785 6.18017 6.20505 6.32571 6.46743 6.56898 6.69312 6.79622 6.95678 7.06713 7.20953 7.33448 7.35712 7.66908 7.71352 7.92930 8.93771 9.62293 10.66225 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.002426 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.487631 B =11540.656084 C =11770.297994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.132 4.132 3 C -0.078 4.078 4 C -0.176 4.176 5 C 0.197 3.803 6 N -0.731 5.731 7 C 0.206 3.794 8 H 0.078 0.922 9 C -0.161 4.161 10 C -0.196 4.196 11 C -0.066 4.066 12 C -0.189 4.189 13 C 0.156 3.844 14 O -0.174 6.174 15 C -0.394 4.394 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.231 4.231 24 C -0.058 4.058 25 C 0.014 3.986 26 F -0.145 7.145 27 C -0.105 4.105 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.403 0.597 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.910 2.534 7.508 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C -0.096 4.096 4 C -0.199 4.199 5 C 0.091 3.909 6 N -0.360 5.360 7 C 0.102 3.898 8 H 0.096 0.904 9 C -0.220 4.220 10 C -0.197 4.197 11 C -0.084 4.084 12 C -0.209 4.209 13 C 0.102 3.898 14 O -0.077 6.077 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.250 4.250 24 C -0.077 4.077 25 C -0.010 4.010 26 F -0.124 7.124 27 C -0.124 4.124 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.240 0.760 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.126 0.874 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.342 2.400 7.454 22.733 hybrid contribution 0.727 0.077 -0.669 0.991 sum -20.615 2.477 6.784 21.844 Atomic orbital electron populations 1.20649 0.91019 1.02400 1.01980 1.19435 0.95981 0.92162 1.05837 1.20815 0.93295 0.97511 0.98025 1.20594 0.94168 0.96110 1.09065 1.17900 0.84735 0.92676 0.95596 1.45056 1.01547 1.09027 1.80343 1.19563 0.89693 0.85030 0.95547 0.90369 1.22274 1.01482 1.01736 0.96480 1.19183 0.96399 0.98320 1.05844 1.20320 0.93673 0.96194 0.98246 1.20182 0.96904 1.00196 1.03597 1.19401 0.85732 0.92653 0.92030 1.83982 1.25056 1.48229 1.50466 1.21290 1.05797 1.02262 1.17636 0.89037 1.25313 0.95412 0.97750 0.98014 1.70030 1.12992 1.26111 1.40339 0.85765 0.78386 0.79489 0.79719 1.19448 1.20219 1.19445 1.21140 0.96667 1.00099 1.07142 1.20520 0.94862 0.97280 0.95042 1.17142 0.90067 0.79921 1.13848 1.91442 1.80384 1.45671 1.94883 1.20748 0.91437 0.99031 1.01174 0.91626 0.91937 0.91769 0.85768 0.85040 0.76023 0.92728 0.92249 0.91538 0.87426 0.86409 0.91858 0.85366 0.87352 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.13 -1.24 5.88 -104.59 -0.62 -1.86 16 3 C -0.08 -0.73 9.69 -39.60 -0.38 -1.11 16 4 C -0.18 -1.90 8.85 -39.40 -0.35 -2.25 16 5 C 0.20 2.47 6.65 -83.67 -0.56 1.92 16 6 N -0.73 -9.53 5.20 -53.22 -0.28 -9.81 16 7 C 0.21 2.65 2.47 -69.08 -0.17 2.48 16 8 H 0.08 0.94 6.34 -51.93 -0.33 0.61 16 9 C -0.16 -1.85 9.41 37.16 0.35 -1.50 16 10 C -0.20 -3.15 4.96 -104.58 -0.52 -3.67 16 11 C -0.07 -1.13 9.04 -39.61 -0.36 -1.49 16 12 C -0.19 -3.91 9.99 -39.39 -0.39 -4.30 16 13 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 14 O -0.17 -4.90 9.76 0.03 0.00 -4.90 16 15 C -0.39 -10.82 9.49 30.89 0.29 -10.53 16 16 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 19 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.23 -4.84 9.17 -39.39 -0.36 -5.20 16 24 C -0.06 -1.01 9.66 -39.61 -0.38 -1.39 16 25 C 0.01 0.18 7.31 -39.25 -0.29 -0.11 16 26 F -0.14 -2.01 16.64 2.25 0.04 -1.97 16 27 C -0.10 -1.12 9.67 -39.54 -0.38 -1.50 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.13 1.27 6.13 -52.49 -0.32 0.95 16 33 H 0.40 5.45 6.37 -40.82 -0.26 5.19 16 34 H 0.05 0.56 7.72 -51.93 -0.40 0.16 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.11 1.58 6.93 -52.49 -0.36 1.22 16 38 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 41 H 0.11 1.56 8.03 -52.48 -0.42 1.14 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -29.96 355.97 -8.43 -38.39 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.18 Total: 8.40 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -4.11 Total: -26.44 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.48 Total: -34.01 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: 0.00 Total: -4.90 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.96 -8.43 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.271 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds