Wall clock time and date at job start Tue Mar 31 2020 11:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38275 * 119.92728 * 2 1 4 4 C 1.38145 * 120.11381 * 180.02562 * 3 2 1 5 5 C 1.38825 * 119.95504 * 359.97438 * 4 3 2 6 6 N 1.39845 * 120.08352 * 180.02562 * 5 4 3 7 7 C 1.46496 * 119.99834 * 0.02562 * 6 5 4 8 8 H 1.09000 * 109.47400 * 325.00245 * 7 6 5 9 9 C 1.53000 * 109.46881 * 84.99961 * 7 6 5 10 10 C 1.50701 * 109.47336 * 205.00054 * 7 6 5 11 11 C 1.38306 * 119.92427 * 319.72770 * 10 7 6 12 12 C 1.38105 * 120.06255 * 179.72245 * 11 10 7 13 13 C 1.38874 * 119.93318 * 0.55045 * 12 11 10 14 14 O 1.35750 * 120.07073 * 179.74911 * 13 12 11 15 15 C 1.34835 * 116.99867 * 174.44388 * 14 13 12 16 16 H 1.07994 * 120.00154 * 5.05131 * 15 14 13 17 17 C 1.38652 * 119.99860 * 185.05425 * 15 14 13 18 18 N 1.31560 * 119.99712 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00102 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47050 * 59.99924 * 19 17 15 21 21 H 1.48499 * 109.47103 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46949 * 299.99853 * 19 17 15 23 23 C 1.38883 * 119.86028 * 359.72491 * 13 12 11 24 24 C 1.38097 * 119.93116 * 359.97438 * 23 13 12 25 25 C 1.39081 * 119.83630 * 0.27980 * 5 4 3 26 26 F 1.35098 * 120.05483 * 179.70044 * 25 5 4 27 27 C 1.38283 * 119.88891 * 359.42132 * 25 5 4 28 28 H 1.09005 * 109.46928 * 89.99509 * 1 2 3 29 29 H 1.09000 * 109.47392 * 210.00149 * 1 2 3 30 30 H 1.09000 * 109.46522 * 330.00335 * 1 2 3 31 31 H 1.08004 * 119.93530 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.02038 * 179.97438 * 4 3 2 33 33 H 0.97001 * 119.99501 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47517 * 299.99849 * 9 7 6 35 35 H 1.09000 * 109.47323 * 60.00246 * 9 7 6 36 36 H 1.09005 * 109.46879 * 179.97438 * 9 7 6 37 37 H 1.08001 * 119.96804 * 0.02562 * 11 10 7 38 38 H 1.07999 * 120.03359 * 180.27560 * 12 11 10 39 39 H 0.97003 * 119.99765 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.03371 * 179.97438 * 23 13 12 41 41 H 1.08004 * 119.96769 * 180.02562 * 24 23 13 42 42 H 1.07996 * 119.97893 * 180.29535 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5783 1.2029 -0.0005 5 6 4.2754 0.0023 -0.0005 6 7 5.6738 0.0037 -0.0005 7 6 6.4050 1.2732 0.0000 8 1 5.8569 2.0085 -0.5890 9 6 6.5506 1.7772 1.4373 10 6 7.7716 1.0661 -0.6005 11 6 8.4901 -0.0774 -0.3026 12 6 9.7403 -0.2728 -0.8558 13 6 10.2806 0.6857 -1.7031 14 8 11.5114 0.4989 -2.2445 15 6 11.9280 1.4102 -3.1467 16 1 11.3269 2.2845 -3.3482 17 6 13.1280 1.2247 -3.8160 18 7 13.8604 0.1598 -3.5702 19 14 13.7049 2.4867 -5.0665 20 1 13.8648 3.8050 -4.4018 21 1 15.0077 2.0590 -5.6366 22 1 12.7010 2.5997 -6.1549 23 6 9.5589 1.8357 -1.9958 24 6 8.3067 2.0223 -1.4443 25 6 3.5795 -1.2019 -0.0059 26 9 4.2535 -2.3727 -0.0120 27 6 2.1967 -1.1987 0.0009 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6546 2.1324 -0.0004 32 1 4.1156 2.1397 -0.0010 33 1 6.1596 -0.8359 -0.0009 34 1 5.5622 1.9270 1.8717 35 1 7.0987 1.0420 2.0264 36 1 7.0950 2.7215 1.4378 37 1 8.0710 -0.8207 0.3596 38 1 10.2991 -1.1681 -0.6264 39 1 14.6998 0.0298 -4.0387 40 1 9.9766 2.5831 -2.6540 41 1 7.7447 2.9162 -1.6718 42 1 1.6549 -2.1329 0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037243847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:57 Heat of formation + Delta-G solvation = -43.919354 kcal Electronic energy + Delta-G solvation = -24771.322556 eV Core-core repulsion = 21016.349523 eV Total energy + Delta-G solvation = -3754.973033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.73660 -41.04478 -40.27768 -38.88185 -36.87596 -34.37292 -33.41907 -31.95519 -31.46537 -30.83940 -29.46705 -27.39541 -26.75048 -24.50226 -23.66659 -23.64086 -22.20484 -21.32088 -19.84375 -19.01834 -18.69112 -17.79656 -17.26332 -16.59485 -16.49164 -16.40028 -16.13252 -15.57293 -15.54397 -15.33811 -15.02259 -14.68510 -14.61724 -14.33249 -14.28137 -14.15512 -13.97932 -13.60081 -13.50160 -12.99926 -12.92830 -12.80424 -12.66269 -12.50885 -12.43556 -12.28445 -12.16486 -11.85946 -11.78479 -11.22451 -10.89521 -10.76998 -9.84789 -9.72680 -8.98308 -8.48991 -8.25553 -6.17620 0.33097 0.52724 0.53226 0.61180 1.34378 1.44974 1.50838 2.16481 2.39064 2.77338 2.80834 3.12867 3.39260 3.45943 3.75119 3.84353 4.00434 4.08570 4.11824 4.29880 4.37267 4.41905 4.43708 4.50622 4.67670 4.69151 4.80069 4.88650 4.92147 4.96897 4.99696 5.09159 5.14435 5.20087 5.22592 5.29605 5.33365 5.43592 5.49360 5.65687 5.66815 5.73479 5.95081 5.99876 6.13441 6.36148 6.66603 6.95351 7.75244 8.73871 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.002426 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.487631 B =11540.656084 C =11770.297994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.129 4.129 3 C -0.076 4.076 4 C -0.178 4.178 5 C 0.179 3.821 6 N -0.740 5.740 7 C 0.211 3.789 8 H 0.098 0.902 9 C -0.157 4.157 10 C -0.168 4.168 11 C -0.060 4.060 12 C -0.203 4.203 13 C 0.115 3.885 14 O -0.231 6.231 15 C -0.415 4.415 16 H 0.104 0.896 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.238 4.238 24 C -0.055 4.055 25 C -0.014 4.014 26 F -0.160 7.160 27 C -0.113 4.113 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.273 0.727 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.895 5.025 8.028 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.131 4.131 3 C -0.094 4.094 4 C -0.201 4.201 5 C 0.074 3.926 6 N -0.369 5.369 7 C 0.107 3.893 8 H 0.116 0.884 9 C -0.215 4.215 10 C -0.169 4.169 11 C -0.078 4.078 12 C -0.223 4.223 13 C 0.065 3.935 14 O -0.138 6.138 15 C -0.490 4.490 16 H 0.121 0.879 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.179 1.179 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.257 4.257 24 C -0.073 4.073 25 C -0.037 4.037 26 F -0.139 7.139 27 C -0.132 4.132 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.167 0.833 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.412 4.904 8.009 27.092 hybrid contribution 1.507 -0.733 -0.609 1.783 sum -23.905 4.171 7.400 25.370 Atomic orbital electron populations 1.20720 0.88898 1.03580 1.02837 1.19842 0.97558 0.91704 1.04020 1.21204 0.92975 0.98710 0.96533 1.20854 0.94910 0.95886 1.08447 1.18072 0.84384 0.93301 0.96830 1.44964 1.01968 1.08540 1.81452 1.19596 0.87524 0.85632 0.96546 0.88424 1.22234 1.02525 1.01668 0.95110 1.19695 0.97530 0.96568 1.03104 1.20635 0.92160 0.97325 0.97709 1.20400 0.98323 0.99769 1.03767 1.19944 0.85587 0.94667 0.93343 1.83949 1.27629 1.49696 1.52522 1.21805 1.06456 1.02795 1.17991 0.87863 1.26631 0.95269 1.00111 1.00154 1.70186 1.13938 1.28988 1.42764 0.84634 0.77938 0.76751 0.76825 1.17948 1.19759 1.18156 1.21272 0.97944 0.99085 1.07428 1.20928 0.93494 0.98861 0.93999 1.17513 0.90989 0.79707 1.15503 1.91398 1.80796 1.46509 1.95170 1.21007 0.90847 1.00344 1.01023 0.90813 0.91281 0.90188 0.82866 0.83605 0.76711 0.91045 0.93167 0.90778 0.84684 0.87125 0.91827 0.85898 0.83292 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.01 71.24 0.71 -0.28 16 2 C -0.13 -2.00 5.88 -19.84 -0.12 -2.12 16 3 C -0.08 -1.11 9.69 22.26 0.22 -0.89 16 4 C -0.18 -3.18 8.85 22.39 0.20 -2.98 16 5 C 0.18 4.06 6.65 38.21 0.25 4.32 16 6 N -0.74 -17.52 5.20 -322.29 -1.68 -19.20 16 7 C 0.21 4.67 2.47 44.25 0.11 4.78 16 8 H 0.10 1.86 6.34 -2.39 -0.02 1.85 16 9 C -0.16 -3.02 9.41 71.98 0.68 -2.34 16 10 C -0.17 -4.97 4.96 -19.83 -0.10 -5.07 16 11 C -0.06 -2.00 9.04 22.25 0.20 -1.80 16 12 C -0.20 -8.69 9.99 22.39 0.22 -8.46 16 13 C 0.12 5.69 6.65 22.58 0.15 5.84 16 14 O -0.23 -13.93 9.76 -22.79 -0.22 -14.15 16 15 C -0.41 -23.99 9.49 67.92 0.64 -23.34 16 16 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 17 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 18 N -0.92 -56.66 13.67 21.61 0.30 -56.37 16 19 Si 1.02 42.53 29.55 68.60 2.03 44.55 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 C -0.24 -10.02 9.17 22.39 0.21 -9.81 16 24 C -0.05 -1.76 9.66 22.25 0.21 -1.54 16 25 C -0.01 -0.33 7.31 22.48 0.16 -0.16 16 26 F -0.16 -4.39 16.64 44.97 0.75 -3.64 16 27 C -0.11 -2.19 9.67 22.29 0.22 -1.98 16 28 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 31 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.15 2.11 6.13 -2.91 -0.02 2.09 16 33 H 0.40 10.14 6.37 -92.71 -0.59 9.55 16 34 H 0.07 1.18 7.72 -2.39 -0.02 1.16 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.14 3.76 6.93 -2.91 -0.02 3.74 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 41 H 0.15 3.62 8.03 -2.91 -0.02 3.59 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -70.93 355.97 6.08 -64.85 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.47 Total: 30.70 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 4.44 Total: -46.75 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.38 Total: -75.56 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.22 Total: -14.15 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.75 Total: -3.64 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.93 6.08 -64.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.931 kcal (2) G-P(sol) polarization free energy of solvation -70.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds