Wall clock time and date at job start Tue Mar 31 2020 11:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38349 * 120.04671 * 2 1 4 4 F 1.35105 * 119.99093 * 0.04490 * 3 2 1 5 5 C 1.38497 * 120.02241 * 180.02562 * 3 2 1 6 6 C 1.38268 * 120.12534 * 359.97438 * 5 3 2 7 7 C 1.38099 * 120.09702 * 359.75025 * 6 5 3 8 8 C 1.38847 * 120.05318 * 180.02562 * 2 1 3 9 9 N 1.39666 * 120.05836 * 359.95606 * 8 2 1 10 10 C 1.46499 * 120.00077 * 180.02562 * 9 8 2 11 11 H 1.08996 * 109.46921 * 324.99824 * 10 9 8 12 12 C 1.52999 * 109.47064 * 84.99673 * 10 9 8 13 13 C 1.50698 * 109.47480 * 204.99629 * 10 9 8 14 14 C 1.38303 * 119.92849 * 319.72943 * 13 10 9 15 15 C 1.38102 * 120.06831 * 179.72254 * 14 13 10 16 16 C 1.38879 * 119.92783 * 0.54724 * 15 14 13 17 17 O 1.35758 * 120.06951 * 179.74780 * 16 15 14 18 18 C 1.34819 * 116.99876 * 174.44039 * 17 16 15 19 19 H 1.07996 * 120.00524 * 5.05486 * 18 17 16 20 20 C 1.38659 * 119.99867 * 185.05442 * 18 17 16 21 21 N 1.31559 * 120.00009 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47038 * 89.99901 * 22 20 18 24 24 H 1.48493 * 109.47391 * 210.00191 * 22 20 18 25 25 H 1.48504 * 109.47246 * 330.00198 * 22 20 18 26 26 C 1.38882 * 119.86283 * 359.72149 * 16 15 14 27 27 C 1.38092 * 119.93148 * 0.02562 * 26 16 15 28 28 H 1.09004 * 109.46614 * 269.97857 * 1 2 3 29 29 H 1.08997 * 109.47384 * 29.97655 * 1 2 3 30 30 H 1.08993 * 109.47065 * 149.97619 * 1 2 3 31 31 H 1.08004 * 119.93902 * 179.97438 * 5 3 2 32 32 H 1.07993 * 119.95268 * 180.02562 * 6 5 3 33 33 H 1.08000 * 120.01272 * 180.25768 * 7 6 5 34 34 H 0.96998 * 120.00122 * 0.26912 * 9 8 2 35 35 H 1.09006 * 109.46941 * 180.02562 * 12 10 9 36 36 H 1.09005 * 109.47362 * 299.99701 * 12 10 9 37 37 H 1.09001 * 109.47550 * 60.00145 * 12 10 9 38 38 H 1.08005 * 119.96809 * 359.97438 * 14 13 10 39 39 H 1.07996 * 120.03478 * 180.26508 * 15 14 13 40 40 H 0.96998 * 120.00424 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.03054 * 179.97438 * 26 16 15 42 42 H 1.08002 * 119.96738 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1976 0.0000 4 9 1.5250 2.3681 0.0009 5 6 3.5847 1.1970 -0.0005 6 6 4.2781 0.0008 -0.0005 7 6 3.5918 -1.1976 0.0052 8 6 2.2024 -1.2018 -0.0005 9 7 1.5064 -2.4127 -0.0002 10 6 2.2413 -3.6800 -0.0002 11 1 3.1516 -3.5721 -0.5899 12 6 2.6064 -4.0578 1.4368 13 6 1.3793 -4.7607 -0.6001 14 6 0.0299 -4.8125 -0.3012 15 6 -0.7639 -5.7982 -0.8540 16 6 -0.2036 -6.7448 -1.7017 17 8 -0.9802 -7.7181 -2.2425 18 6 -0.3993 -8.5338 -3.1452 19 1 0.6582 -8.4494 -3.3475 20 6 -1.1596 -9.4811 -3.8139 21 7 -2.4479 -9.5836 -3.5680 22 14 -0.3549 -10.6108 -5.0652 23 1 0.1266 -11.8398 -4.3848 24 1 -1.3450 -10.9784 -6.1090 25 1 0.7935 -9.9122 -5.6964 26 6 1.1529 -6.6935 -1.9954 27 6 1.9403 -5.7022 -1.4437 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 4.1241 2.1327 -0.0010 32 1 5.3581 0.0036 -0.0005 33 1 4.1348 -2.1311 0.0094 34 1 0.5364 -2.4146 -0.0035 35 1 3.1536 -5.0006 1.4367 36 1 3.2300 -3.2762 1.8708 37 1 1.6961 -4.1658 2.0266 38 1 -0.4043 -4.0788 0.3619 39 1 -1.8183 -5.8355 -0.6236 40 1 -2.9799 -10.2460 -4.0360 41 1 1.5915 -7.4285 -2.6539 42 1 2.9951 -5.6615 -1.6720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043320107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:03 Heat of formation + Delta-G solvation = -26.150654 kcal Electronic energy + Delta-G solvation = -24897.891452 eV Core-core repulsion = 21143.688928 eV Total energy + Delta-G solvation = -3754.202524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.95107 -39.94050 -39.07905 -37.32468 -35.34708 -33.14943 -32.35639 -31.09924 -30.35842 -28.61422 -28.10437 -26.87011 -25.50505 -23.45826 -22.33778 -21.88342 -21.41507 -20.09609 -18.22348 -17.80556 -17.40748 -16.71299 -15.90310 -15.75790 -15.48679 -15.21593 -14.60336 -14.57787 -14.08692 -14.02654 -13.68279 -13.67389 -13.47537 -13.29009 -13.03358 -12.85867 -12.80041 -12.51469 -12.32534 -12.01435 -11.76786 -11.71203 -11.36539 -11.31223 -11.20672 -10.87822 -10.83756 -10.54381 -10.50646 -10.11247 -9.44362 -8.91650 -8.70186 -8.33180 -7.49690 -7.31704 -6.53762 -4.12867 1.13895 1.39634 2.07171 2.12422 3.06983 3.08517 3.13341 3.35558 3.60561 3.89370 4.30638 4.42376 4.65364 4.78602 4.86875 4.94570 4.99705 5.15284 5.23650 5.26265 5.36659 5.42811 5.48919 5.49768 5.55047 5.63875 5.72486 5.82676 5.85895 6.00752 6.07184 6.10722 6.17107 6.18408 6.28696 6.36618 6.53744 6.71445 6.78426 6.93057 7.04271 7.19199 7.31694 7.34177 7.65038 7.68707 7.90602 8.91578 9.59793 10.63873 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.002469 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.613108 B =11336.418517 C =11632.144694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.205 4.205 3 C 0.142 3.858 4 F -0.142 7.142 5 C -0.220 4.220 6 C -0.048 4.048 7 C -0.209 4.209 8 C 0.254 3.746 9 N -0.728 5.728 10 C 0.204 3.796 11 H 0.079 0.921 12 C -0.161 4.161 13 C -0.196 4.196 14 C -0.067 4.067 15 C -0.190 4.190 16 C 0.156 3.844 17 O -0.174 6.174 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.231 4.231 27 C -0.058 4.058 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.129 0.871 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.958 15.689 7.494 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.211 4.211 3 C 0.122 3.878 4 F -0.120 7.120 5 C -0.241 4.241 6 C -0.067 4.067 7 C -0.232 4.232 8 C 0.147 3.853 9 N -0.357 5.357 10 C 0.099 3.901 11 H 0.097 0.903 12 C -0.219 4.219 13 C -0.197 4.197 14 C -0.086 4.086 15 C -0.209 4.209 16 C 0.102 3.898 17 O -0.077 6.077 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.250 4.250 27 C -0.077 4.077 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.239 0.761 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.575 15.305 7.437 20.035 hybrid contribution -0.051 -0.413 -0.670 0.788 sum 10.524 14.892 6.767 19.450 Atomic orbital electron populations 1.20511 0.90531 1.02927 1.02226 1.19241 0.96597 0.90832 1.14429 1.17219 0.89764 0.80183 1.00635 1.91455 1.80689 1.46145 1.93742 1.20781 0.91936 0.99506 1.11901 1.20674 0.99552 0.91046 0.95410 1.20744 0.92059 0.98947 1.11446 1.17401 0.91178 0.85364 0.91374 1.45225 1.08608 1.02109 1.79734 1.19585 0.93871 0.81015 0.95599 0.90304 1.22268 1.01867 1.01373 0.96432 1.19186 0.94392 1.00333 1.05831 1.20301 0.92862 0.97108 0.98290 1.20178 0.99954 0.97157 1.03617 1.19402 0.90065 0.88313 0.92037 1.83978 1.36971 1.36333 1.50450 1.21340 0.94695 1.13389 1.17544 0.88968 1.25314 0.95454 0.97680 0.98015 1.70033 1.05410 1.33598 1.40416 0.85700 0.78699 0.79680 0.79307 1.19799 1.20177 1.19129 1.21147 0.94014 1.02761 1.07085 1.20528 0.98326 0.93816 0.95015 0.91426 0.91316 0.91575 0.85541 0.85434 0.85354 0.76094 0.91579 0.92672 0.92266 0.87486 0.86424 0.91886 0.85368 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.40 36.01 0.34 -0.75 16 2 C -0.21 -2.43 5.90 -104.36 -0.62 -3.05 16 3 C 0.14 1.68 7.24 -39.45 -0.29 1.40 16 4 F -0.14 -1.74 16.48 2.25 0.04 -1.70 16 5 C -0.22 -2.28 10.02 -39.47 -0.40 -2.68 16 6 C -0.05 -0.46 10.04 -39.62 -0.40 -0.85 16 7 C -0.21 -2.22 8.83 -39.37 -0.35 -2.57 16 8 C 0.25 2.98 6.62 -83.80 -0.55 2.43 16 9 N -0.73 -8.57 5.10 -53.30 -0.27 -8.84 16 10 C 0.20 2.47 2.46 -69.08 -0.17 2.30 16 11 H 0.08 0.91 6.35 -51.93 -0.33 0.58 16 12 C -0.16 -1.76 9.39 37.16 0.35 -1.41 16 13 C -0.20 -3.00 4.96 -104.58 -0.52 -3.52 16 14 C -0.07 -1.09 9.04 -39.61 -0.36 -1.45 16 15 C -0.19 -3.77 9.99 -39.39 -0.39 -4.17 16 16 C 0.16 3.60 6.65 -39.11 -0.26 3.34 16 17 O -0.17 -4.82 9.76 0.05 0.00 -4.82 16 18 C -0.39 -10.68 9.49 30.89 0.29 -10.39 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.70 13.67 55.48 0.76 -23.94 16 22 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.23 -4.72 9.17 -39.40 -0.36 -5.09 16 27 C -0.06 -0.98 9.66 -39.61 -0.38 -1.36 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.70 7.64 -51.93 -0.40 0.30 16 30 H 0.07 0.67 6.54 -51.93 -0.34 0.33 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.22 6.09 -52.49 -0.32 0.90 16 34 H 0.40 4.63 4.87 -40.82 -0.20 4.43 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.11 1.44 6.93 -52.48 -0.36 1.07 16 39 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 42 H 0.11 1.52 8.03 -52.49 -0.42 1.10 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -29.39 352.11 -8.36 -37.75 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.01 Total: 8.12 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -4.16 Total: -26.83 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.49 Total: -32.78 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.39 -8.36 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043320107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.598 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds