Wall clock time and date at job start Tue Mar 31 2020 11:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38349 * 120.04671 * 2 1 4 4 F 1.35105 * 119.99093 * 0.04490 * 3 2 1 5 5 C 1.38497 * 120.02241 * 180.02562 * 3 2 1 6 6 C 1.38268 * 120.12534 * 359.97438 * 5 3 2 7 7 C 1.38099 * 120.09702 * 359.75025 * 6 5 3 8 8 C 1.38847 * 120.05318 * 180.02562 * 2 1 3 9 9 N 1.39666 * 120.05836 * 359.95606 * 8 2 1 10 10 C 1.46499 * 120.00077 * 180.02562 * 9 8 2 11 11 H 1.08996 * 109.46921 * 324.99824 * 10 9 8 12 12 C 1.52999 * 109.47064 * 84.99673 * 10 9 8 13 13 C 1.50698 * 109.47480 * 204.99629 * 10 9 8 14 14 C 1.38303 * 119.92849 * 319.72943 * 13 10 9 15 15 C 1.38102 * 120.06831 * 179.72254 * 14 13 10 16 16 C 1.38879 * 119.92783 * 0.54724 * 15 14 13 17 17 O 1.35758 * 120.06951 * 179.74780 * 16 15 14 18 18 C 1.34819 * 116.99876 * 174.44039 * 17 16 15 19 19 H 1.07996 * 120.00524 * 5.05486 * 18 17 16 20 20 C 1.38659 * 119.99867 * 185.05442 * 18 17 16 21 21 N 1.31559 * 120.00009 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47038 * 89.99901 * 22 20 18 24 24 H 1.48493 * 109.47391 * 210.00191 * 22 20 18 25 25 H 1.48504 * 109.47246 * 330.00198 * 22 20 18 26 26 C 1.38882 * 119.86283 * 359.72149 * 16 15 14 27 27 C 1.38092 * 119.93148 * 0.02562 * 26 16 15 28 28 H 1.09004 * 109.46614 * 269.97857 * 1 2 3 29 29 H 1.08997 * 109.47384 * 29.97655 * 1 2 3 30 30 H 1.08993 * 109.47065 * 149.97619 * 1 2 3 31 31 H 1.08004 * 119.93902 * 179.97438 * 5 3 2 32 32 H 1.07993 * 119.95268 * 180.02562 * 6 5 3 33 33 H 1.08000 * 120.01272 * 180.25768 * 7 6 5 34 34 H 0.96998 * 120.00122 * 0.26912 * 9 8 2 35 35 H 1.09006 * 109.46941 * 180.02562 * 12 10 9 36 36 H 1.09005 * 109.47362 * 299.99701 * 12 10 9 37 37 H 1.09001 * 109.47550 * 60.00145 * 12 10 9 38 38 H 1.08005 * 119.96809 * 359.97438 * 14 13 10 39 39 H 1.07996 * 120.03478 * 180.26508 * 15 14 13 40 40 H 0.96998 * 120.00424 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.03054 * 179.97438 * 26 16 15 42 42 H 1.08002 * 119.96738 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1976 0.0000 4 9 1.5250 2.3681 0.0009 5 6 3.5847 1.1970 -0.0005 6 6 4.2781 0.0008 -0.0005 7 6 3.5918 -1.1976 0.0052 8 6 2.2024 -1.2018 -0.0005 9 7 1.5064 -2.4127 -0.0002 10 6 2.2413 -3.6800 -0.0002 11 1 3.1516 -3.5721 -0.5899 12 6 2.6064 -4.0578 1.4368 13 6 1.3793 -4.7607 -0.6001 14 6 0.0299 -4.8125 -0.3012 15 6 -0.7639 -5.7982 -0.8540 16 6 -0.2036 -6.7448 -1.7017 17 8 -0.9802 -7.7181 -2.2425 18 6 -0.3993 -8.5338 -3.1452 19 1 0.6582 -8.4494 -3.3475 20 6 -1.1596 -9.4811 -3.8139 21 7 -2.4479 -9.5836 -3.5680 22 14 -0.3549 -10.6108 -5.0652 23 1 0.1266 -11.8398 -4.3848 24 1 -1.3450 -10.9784 -6.1090 25 1 0.7935 -9.9122 -5.6964 26 6 1.1529 -6.6935 -1.9954 27 6 1.9403 -5.7022 -1.4437 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 4.1241 2.1327 -0.0010 32 1 5.3581 0.0036 -0.0005 33 1 4.1348 -2.1311 0.0094 34 1 0.5364 -2.4146 -0.0035 35 1 3.1536 -5.0006 1.4367 36 1 3.2300 -3.2762 1.8708 37 1 1.6961 -4.1658 2.0266 38 1 -0.4043 -4.0788 0.3619 39 1 -1.8183 -5.8355 -0.6236 40 1 -2.9799 -10.2460 -4.0360 41 1 1.5915 -7.4285 -2.6539 42 1 2.9951 -5.6615 -1.6720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043320107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:03 Heat of formation + Delta-G solvation = -41.209150 kcal Electronic energy + Delta-G solvation = -24898.544437 eV Core-core repulsion = 21143.688928 eV Total energy + Delta-G solvation = -3754.855509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.83948 -41.09280 -40.39841 -38.75518 -36.52630 -34.35646 -33.90368 -32.17083 -31.82669 -29.52579 -29.38993 -27.68567 -27.37595 -24.53891 -23.77735 -22.98272 -22.36080 -21.34786 -19.83839 -18.98932 -18.74242 -17.92127 -16.82324 -16.65637 -16.52324 -16.40970 -16.14886 -15.88789 -15.54984 -15.48588 -15.01268 -14.83301 -14.42227 -14.24517 -14.22618 -14.09555 -13.89626 -13.56815 -13.52113 -13.33303 -12.97809 -12.82973 -12.70871 -12.44030 -12.36766 -12.15232 -12.10620 -12.04614 -11.73215 -11.21101 -11.00050 -10.78595 -9.82091 -9.52037 -8.95951 -8.48514 -8.35614 -6.16697 0.32254 0.55597 0.56862 0.63998 1.35040 1.43792 1.52334 2.16770 2.40535 2.79049 2.82719 3.14694 3.46000 3.50429 3.78568 3.89476 3.97597 4.03528 4.13807 4.17681 4.36680 4.43289 4.51424 4.53214 4.59838 4.69982 4.70809 4.71428 4.89679 4.95855 4.99675 5.03728 5.14367 5.24441 5.24671 5.32006 5.35869 5.37471 5.51695 5.57570 5.69135 5.69785 5.96200 6.01257 6.16130 6.40511 6.75185 6.96407 7.76740 8.74635 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.002469 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.613108 B =11336.418517 C =11632.144694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.218 4.218 3 C 0.119 3.881 4 F -0.150 7.150 5 C -0.221 4.221 6 C -0.045 4.045 7 C -0.211 4.211 8 C 0.240 3.760 9 N -0.732 5.732 10 C 0.209 3.791 11 H 0.096 0.904 12 C -0.157 4.157 13 C -0.166 4.166 14 C -0.059 4.059 15 C -0.202 4.202 16 C 0.115 3.885 17 O -0.232 6.232 18 C -0.413 4.413 19 H 0.103 0.897 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.273 1.273 25 H -0.252 1.252 26 C -0.239 4.239 27 C -0.056 4.056 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.400 0.600 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.141 0.859 39 H 0.112 0.888 40 H 0.273 0.727 41 H 0.121 0.879 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.497 17.421 8.196 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.223 4.223 3 C 0.100 3.900 4 F -0.129 7.129 5 C -0.242 4.242 6 C -0.063 4.063 7 C -0.234 4.234 8 C 0.135 3.865 9 N -0.361 5.361 10 C 0.105 3.895 11 H 0.114 0.886 12 C -0.216 4.216 13 C -0.167 4.167 14 C -0.077 4.077 15 C -0.221 4.221 16 C 0.064 3.936 17 O -0.139 6.139 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.175 1.175 26 C -0.258 4.258 27 C -0.074 4.074 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.238 0.762 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.159 17.100 8.174 23.658 hybrid contribution -0.965 -0.568 -0.659 1.299 sum 13.194 16.533 7.516 22.448 Atomic orbital electron populations 1.20519 0.90158 1.02831 1.02664 1.19419 0.97186 0.91111 1.14632 1.17510 0.90594 0.80051 1.01871 1.91432 1.80967 1.46515 1.93940 1.21092 0.91442 1.00817 1.10844 1.21037 1.01095 0.90197 0.93981 1.21021 0.91626 1.00064 1.10682 1.17509 0.91779 0.85020 0.92207 1.45104 1.08553 1.01974 1.80498 1.19598 0.93482 0.79964 0.96506 0.88579 1.22232 1.01976 1.02211 0.95146 1.19685 0.94284 0.99801 1.02975 1.20658 0.93169 0.96231 0.97640 1.20420 1.00433 0.97668 1.03629 1.19966 0.91320 0.88899 0.93393 1.83945 1.38781 1.38610 1.52527 1.21826 0.95408 1.13778 1.17889 0.87927 1.26592 0.96021 0.99309 1.00140 1.70181 1.07366 1.35494 1.42881 0.84595 0.77946 0.77399 0.76354 1.18748 1.19760 1.17546 1.21262 0.93361 1.03785 1.07440 1.20923 0.99870 0.92500 0.94126 0.90728 0.91615 0.91447 0.83977 0.82384 0.83838 0.76177 0.91058 0.91094 0.92878 0.84145 0.87008 0.91844 0.86174 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.40 71.24 0.67 -1.37 16 2 C -0.22 -4.71 5.90 -19.69 -0.12 -4.83 16 3 C 0.12 2.61 7.24 22.36 0.16 2.78 16 4 F -0.15 -3.51 16.48 44.97 0.74 -2.77 16 5 C -0.22 -3.93 10.02 22.34 0.22 -3.71 16 6 C -0.04 -0.67 10.04 22.24 0.22 -0.44 16 7 C -0.21 -3.60 8.83 22.41 0.20 -3.40 16 8 C 0.24 4.88 6.62 38.21 0.25 5.13 16 9 N -0.73 -14.64 5.10 -322.55 -1.64 -16.29 16 10 C 0.21 4.15 2.46 44.24 0.11 4.26 16 11 H 0.10 1.68 6.35 -2.39 -0.02 1.67 16 12 C -0.16 -2.74 9.39 71.98 0.68 -2.06 16 13 C -0.17 -4.56 4.96 -19.83 -0.10 -4.66 16 14 C -0.06 -1.79 9.04 22.25 0.20 -1.59 16 15 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 16 C 0.11 5.50 6.65 22.58 0.15 5.65 16 17 O -0.23 -13.70 9.76 -22.72 -0.22 -13.92 16 18 C -0.41 -23.58 9.49 67.92 0.64 -22.94 16 19 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 20 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 21 N -0.92 -56.08 13.67 21.62 0.30 -55.78 16 22 Si 1.02 42.11 29.55 68.60 2.03 44.14 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 26 C -0.24 -9.80 9.17 22.39 0.21 -9.59 16 27 C -0.06 -1.72 9.66 22.25 0.21 -1.51 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.28 7.64 -2.39 -0.02 1.26 16 30 H 0.07 1.26 6.54 -2.39 -0.02 1.24 16 31 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.14 1.96 6.09 -2.91 -0.02 1.95 16 34 H 0.40 8.04 4.87 -92.71 -0.45 7.58 16 35 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.07 7.67 -2.38 -0.02 1.05 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.14 3.35 6.93 -2.91 -0.02 3.33 16 39 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 40 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 42 H 0.15 3.43 8.03 -2.91 -0.02 3.41 16 Total: -1.00 -69.11 352.11 6.21 -62.90 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.61 Total: 28.80 kcal Atomic # 6 Polarization: -51.48 SS G_CDS: 4.41 Total: -47.07 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.35 Total: -72.07 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.22 Total: -13.92 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.74 Total: -2.77 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -69.11 6.21 -62.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043320107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.688 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds