Wall clock time and date at job start Tue Mar 31 2020 11:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38341 * 120.04859 * 2 1 4 4 F 1.35106 * 119.98698 * 0.02562 * 3 2 1 5 5 C 1.38493 * 120.02612 * 180.02562 * 3 2 1 6 6 C 1.38270 * 120.12261 * 359.97438 * 5 3 2 7 7 C 1.38094 * 120.09730 * 0.23716 * 6 5 3 8 8 C 1.38848 * 120.04855 * 180.02562 * 2 1 3 9 9 N 1.39667 * 120.06613 * 359.95498 * 8 2 1 10 10 C 1.46494 * 120.00341 * 179.97438 * 9 8 2 11 11 H 1.08998 * 109.46858 * 35.00249 * 10 9 8 12 12 C 1.52996 * 109.47171 * 275.00393 * 10 9 8 13 13 C 1.50706 * 109.47146 * 155.00142 * 10 9 8 14 14 C 1.38298 * 119.92569 * 39.72864 * 13 10 9 15 15 C 1.38106 * 120.06336 * 179.72806 * 14 13 10 16 16 C 1.38878 * 119.92983 * 0.54098 * 15 14 13 17 17 O 1.35755 * 120.07224 * 179.75035 * 16 15 14 18 18 C 1.34825 * 117.00041 * 174.44497 * 17 16 15 19 19 H 1.07991 * 120.00173 * 5.05790 * 18 17 16 20 20 C 1.38662 * 119.99613 * 185.05607 * 18 17 16 21 21 N 1.31557 * 119.99726 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00131 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47006 * 89.99743 * 22 20 18 24 24 H 1.48495 * 109.46921 * 209.99863 * 22 20 18 25 25 H 1.48497 * 109.46876 * 330.00153 * 22 20 18 26 26 C 1.38886 * 119.86112 * 359.73174 * 16 15 14 27 27 C 1.38090 * 119.93209 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.46839 * 90.00294 * 1 2 3 29 29 H 1.09003 * 109.46562 * 209.99885 * 1 2 3 30 30 H 1.08996 * 109.47025 * 329.99920 * 1 2 3 31 31 H 1.07995 * 119.94069 * 179.97438 * 5 3 2 32 32 H 1.07995 * 119.95605 * 179.97438 * 6 5 3 33 33 H 1.08005 * 120.01171 * 179.74249 * 7 6 5 34 34 H 0.97003 * 119.99580 * 0.02562 * 9 8 2 35 35 H 1.09006 * 109.46822 * 299.99684 * 12 10 9 36 36 H 1.08997 * 109.47626 * 59.99802 * 12 10 9 37 37 H 1.08999 * 109.47329 * 179.97438 * 12 10 9 38 38 H 1.07991 * 119.97038 * 0.02562 * 14 13 10 39 39 H 1.07999 * 120.03537 * 180.27613 * 15 14 13 40 40 H 0.97002 * 119.99576 * 180.02562 * 21 20 18 41 41 H 1.08005 * 120.02982 * 179.97438 * 26 16 15 42 42 H 1.07996 * 119.96893 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1975 0.0000 4 9 1.5250 2.3680 0.0005 5 6 3.5847 1.1969 -0.0005 6 6 4.2781 0.0007 -0.0005 7 6 3.5918 -1.1976 -0.0049 8 6 2.2023 -1.2019 -0.0005 9 7 1.5064 -2.4128 -0.0001 10 6 2.2413 -3.6801 -0.0013 11 1 3.1524 -3.5722 0.5873 12 6 2.6045 -4.0577 -1.4387 13 6 1.3800 -4.7608 0.5998 14 6 0.0281 -4.8058 0.3117 15 6 -0.7627 -5.7983 0.8564 16 6 -0.2013 -6.7450 1.7033 17 8 -0.9770 -7.7189 2.2444 18 6 -0.3504 -8.6717 2.9636 19 1 0.7093 -8.5934 3.1563 20 6 -1.0666 -9.7522 3.4559 21 7 -0.4553 -10.6816 4.1580 22 14 -2.8995 -9.8879 3.1220 23 1 -3.1183 -10.6363 1.8580 24 1 -3.5549 -10.6078 4.2433 25 1 -3.4823 -8.5276 2.9990 26 6 1.1556 -6.6937 1.9951 27 6 1.9422 -5.7025 1.4424 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 4.1241 2.1325 -0.0010 32 1 5.3581 0.0034 -0.0014 33 1 4.1349 -2.1312 -0.0091 34 1 0.5364 -2.4147 0.0002 35 1 1.6933 -4.1656 -2.0273 36 1 3.2274 -3.2761 -1.8735 37 1 3.1517 -5.0004 -1.4396 38 1 -0.4086 -4.0670 -0.3438 39 1 -1.8175 -5.8356 0.6276 40 1 -0.9563 -11.4377 4.5021 41 1 1.5950 -7.4284 2.6537 42 1 2.9975 -5.6623 1.6686 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043320109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:05 Heat of formation + Delta-G solvation = -38.007472 kcal Electronic energy + Delta-G solvation = -24924.444875 eV Core-core repulsion = 21169.728201 eV Total energy + Delta-G solvation = -3754.716674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.83938 -41.16556 -40.45686 -38.85431 -36.56150 -34.49015 -33.95459 -32.23088 -31.86002 -29.66131 -29.43655 -27.68815 -27.27168 -24.48848 -23.85327 -22.94888 -22.37933 -21.30715 -19.80163 -19.22776 -18.76141 -17.97861 -16.84325 -16.73455 -16.62488 -16.38548 -16.01857 -15.90494 -15.74229 -15.42182 -15.00482 -14.87531 -14.42033 -14.26204 -14.23682 -14.11818 -14.03635 -13.88331 -13.58150 -13.33841 -13.05994 -12.83282 -12.74397 -12.50854 -12.39169 -12.13845 -12.10104 -12.01001 -11.71553 -11.31369 -11.02059 -10.89201 -9.85197 -9.52259 -9.04667 -8.51555 -8.36182 -6.24153 0.31958 0.52062 0.53992 0.60123 1.30968 1.34351 1.50768 2.26486 2.38715 2.74917 2.80084 3.02663 3.13628 3.48336 3.75001 3.89071 3.96995 4.02097 4.09859 4.17041 4.34983 4.41763 4.50346 4.52424 4.59023 4.68862 4.70892 4.71804 4.88009 4.90970 4.97669 5.02060 5.19413 5.24625 5.30270 5.32683 5.35893 5.39476 5.50788 5.57570 5.66788 5.76783 5.87827 5.95273 6.18592 6.38872 6.76023 6.82882 7.56781 8.59901 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026142 B = 0.002529 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.805430 B =11067.918238 C =11584.679617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.216 4.216 3 C 0.119 3.881 4 F -0.150 7.150 5 C -0.221 4.221 6 C -0.046 4.046 7 C -0.212 4.212 8 C 0.241 3.759 9 N -0.731 5.731 10 C 0.208 3.792 11 H 0.094 0.906 12 C -0.157 4.157 13 C -0.158 4.158 14 C -0.061 4.061 15 C -0.189 4.189 16 C 0.121 3.879 17 O -0.245 6.245 18 C -0.399 4.399 19 H 0.083 0.917 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.263 1.263 26 C -0.233 4.233 27 C -0.060 4.060 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.142 0.858 34 H 0.402 0.598 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.147 0.853 39 H 0.128 0.872 40 H 0.285 0.715 41 H 0.109 0.891 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 21.290 -11.702 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.222 4.222 3 C 0.100 3.900 4 F -0.128 7.128 5 C -0.242 4.242 6 C -0.064 4.064 7 C -0.235 4.235 8 C 0.135 3.865 9 N -0.360 5.360 10 C 0.103 3.897 11 H 0.112 0.888 12 C -0.216 4.216 13 C -0.159 4.159 14 C -0.080 4.080 15 C -0.208 4.208 16 C 0.072 3.928 17 O -0.152 6.152 18 C -0.475 4.475 19 H 0.100 0.900 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.253 4.253 27 C -0.079 4.079 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.240 0.760 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.165 0.835 39 H 0.146 0.854 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.116 20.913 -11.591 24.947 hybrid contribution -1.063 -0.510 0.489 1.276 sum 6.053 20.403 -11.103 24.004 Atomic orbital electron populations 1.20527 0.89962 1.02920 1.02738 1.19421 0.97299 0.90995 1.14485 1.17504 0.90551 0.80112 1.01861 1.91434 1.80936 1.46516 1.93937 1.21087 0.91529 1.00760 1.10825 1.21028 1.01068 0.90257 0.94054 1.21019 0.91759 0.99993 1.10705 1.17487 0.91695 0.85076 0.92215 1.45056 1.08562 1.01824 1.80587 1.19597 0.93514 0.80073 0.96533 0.88827 1.22229 1.02125 1.02142 0.95097 1.19718 0.94521 0.99294 1.02344 1.20727 0.92911 0.96420 0.97895 1.20484 1.01167 0.97331 1.01808 1.19709 0.90743 0.89526 0.92845 1.83518 1.35872 1.33976 1.61838 1.20709 0.95463 1.00773 1.30593 0.89970 1.25276 1.04596 0.93607 0.95351 1.69727 1.38959 1.11753 1.35865 0.85228 0.77988 0.79063 0.78517 1.19059 1.19331 1.18707 1.21285 0.94056 1.03218 1.06705 1.20890 0.99812 0.92696 0.94476 0.90636 0.91234 0.91635 0.84035 0.82528 0.83988 0.75996 0.92522 0.91132 0.91253 0.83500 0.85371 0.90564 0.87266 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 9.40 71.24 0.67 -1.19 16 2 C -0.22 -4.44 5.90 -19.69 -0.12 -4.56 16 3 C 0.12 2.53 7.24 22.36 0.16 2.69 16 4 F -0.15 -3.39 16.48 44.97 0.74 -2.65 16 5 C -0.22 -3.85 10.02 22.34 0.22 -3.63 16 6 C -0.05 -0.67 10.04 22.24 0.22 -0.45 16 7 C -0.21 -3.55 8.84 22.41 0.20 -3.35 16 8 C 0.24 4.66 6.62 38.21 0.25 4.92 16 9 N -0.73 -13.57 5.10 -322.54 -1.64 -15.21 16 10 C 0.21 3.94 2.47 44.25 0.11 4.05 16 11 H 0.09 1.63 6.35 -2.39 -0.02 1.61 16 12 C -0.16 -2.62 9.40 71.98 0.68 -1.95 16 13 C -0.16 -4.10 4.96 -19.83 -0.10 -4.20 16 14 C -0.06 -1.67 9.05 22.25 0.20 -1.47 16 15 C -0.19 -6.71 9.99 22.39 0.22 -6.48 16 16 C 0.12 5.39 6.65 22.58 0.15 5.54 16 17 O -0.24 -12.94 8.59 -22.75 -0.20 -13.14 16 18 C -0.40 -23.05 9.95 67.92 0.68 -22.38 16 19 H 0.08 4.96 5.44 -2.91 -0.02 4.94 16 20 C 0.01 0.58 5.49 84.84 0.47 1.05 16 21 N -0.92 -54.46 13.96 21.62 0.30 -54.16 16 22 Si 0.97 44.76 28.62 68.60 1.96 46.73 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 26 C -0.23 -9.65 9.17 22.39 0.21 -9.44 16 27 C -0.06 -1.87 9.66 22.25 0.21 -1.66 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.15 6.55 -2.39 -0.02 1.13 16 30 H 0.06 1.18 7.64 -2.39 -0.02 1.16 16 31 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.14 1.95 6.10 -2.91 -0.02 1.93 16 34 H 0.40 7.17 4.84 -92.71 -0.45 6.73 16 35 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 36 H 0.07 1.02 7.69 -2.39 -0.02 1.01 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.15 2.94 6.89 -2.92 -0.02 2.92 16 39 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.11 5.03 5.64 -2.91 -0.02 5.02 16 42 H 0.14 3.51 8.03 -2.91 -0.02 3.49 16 Total: -1.00 -65.18 350.97 6.22 -58.96 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.61 Total: 21.98 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.44 Total: -42.51 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.34 Total: -69.37 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.20 Total: -13.14 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.74 Total: -2.65 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.96 Total: 46.73 kcal Total: -65.18 6.22 -58.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043320109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.955 kcal (2) G-P(sol) polarization free energy of solvation -65.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds