Wall clock time and date at job start Tue Mar 31 2020 11:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38276 * 119.93419 * 2 1 4 4 C 1.38128 * 120.06396 * 180.02562 * 3 2 1 5 5 C 1.38827 * 119.93296 * 359.97438 * 4 3 2 6 6 N 1.40222 * 120.06191 * 179.97438 * 5 4 3 7 7 C 1.35048 * 126.60115 * 180.31861 * 6 5 4 8 8 C 1.36694 * 106.78675 * 180.17100 * 7 6 5 9 9 C 1.47376 * 125.77422 * 179.84065 * 8 7 6 10 10 O 1.21514 * 120.00050 * 359.71156 * 9 8 7 11 11 O 1.34751 * 119.99688 * 179.71537 * 9 8 7 12 12 C 1.45206 * 116.99894 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47091 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.46891 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00275 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99529 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99910 * 19 17 15 21 21 H 1.48503 * 109.46827 * 209.99657 * 19 17 15 22 22 H 1.48501 * 109.47006 * 329.99902 * 19 17 15 23 23 N 1.34456 * 108.44725 * 359.57125 * 8 7 6 24 24 N 1.28748 * 109.56505 * 0.26565 * 23 8 7 25 25 C 1.38824 * 119.86838 * 0.25548 * 5 4 3 26 26 C 1.38127 * 119.93722 * 359.51398 * 25 5 4 27 27 H 1.09004 * 109.47025 * 90.00209 * 1 2 3 28 28 H 1.09001 * 109.47265 * 210.00067 * 1 2 3 29 29 H 1.08999 * 109.47136 * 329.99896 * 1 2 3 30 30 H 1.08001 * 119.96666 * 359.97091 * 3 2 1 31 31 H 1.07996 * 120.03020 * 179.97438 * 4 3 2 32 32 H 1.07997 * 126.60715 * 0.02562 * 7 6 5 33 33 H 1.09001 * 109.47157 * 299.99725 * 12 11 9 34 34 H 1.09004 * 109.47122 * 59.99858 * 12 11 9 35 35 H 1.08992 * 109.47056 * 300.00206 * 13 12 11 36 36 H 1.09004 * 109.47006 * 60.00090 * 13 12 11 37 37 H 1.09001 * 109.47372 * 300.00036 * 14 13 12 38 38 H 1.08996 * 109.47261 * 60.00575 * 14 13 12 39 39 H 0.96996 * 119.99496 * 180.02562 * 18 17 15 40 40 H 1.08008 * 120.03224 * 179.72250 * 25 5 4 41 41 H 1.07998 * 119.96819 * 180.23285 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5783 1.2014 -0.0005 5 6 4.2737 -0.0001 -0.0005 6 7 5.6760 -0.0001 -0.0016 7 6 6.4812 -1.0842 -0.0078 8 6 7.7672 -0.6209 -0.0025 9 6 8.9830 -1.4537 -0.0029 10 8 8.8896 -2.6653 -0.0031 11 8 10.1984 -0.8717 -0.0031 12 6 11.3517 -1.7538 -0.0030 13 6 12.6332 -0.9178 -0.0039 14 6 13.8484 -1.8473 -0.0031 15 6 15.1106 -1.0239 -0.0033 16 1 15.0519 0.0545 -0.0036 17 6 16.3404 -1.6474 -0.0022 18 7 17.4419 -0.9287 -0.0019 19 14 16.4420 -3.5126 -0.0011 20 1 16.4698 -4.0077 -1.4008 21 1 17.6793 -3.9404 0.7000 22 1 15.2578 -4.0724 0.6986 23 7 7.7351 0.7233 -0.0028 24 7 6.5120 1.1254 -0.0024 25 6 3.5782 -1.2015 -0.0054 26 6 2.1969 -1.1984 0.0000 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6554 2.1327 -0.0005 31 1 4.1166 2.1376 -0.0010 32 1 6.1692 -2.1181 -0.0132 33 1 11.3283 -2.3824 0.8872 34 1 11.3281 -2.3829 -0.8929 35 1 12.6564 -0.2895 -0.8942 36 1 12.6570 -0.2884 0.8858 37 1 13.8250 -2.4754 0.8875 38 1 13.8249 -2.4769 -0.8925 39 1 18.3071 -1.3673 -0.0015 40 1 4.1166 -2.1378 -0.0099 41 1 1.6553 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046521649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:50 Heat of formation + Delta-G solvation = 30.243886 kcal Electronic energy + Delta-G solvation = -23765.618096 eV Core-core repulsion = 20033.780984 eV Total energy + Delta-G solvation = -3731.837112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.84993 -40.23359 -39.86276 -36.56343 -35.60119 -34.03596 -32.32751 -31.98809 -31.77190 -31.20882 -27.90015 -27.34649 -24.99713 -23.95514 -23.43460 -22.48298 -21.62197 -20.79230 -20.21527 -19.15052 -17.26953 -16.95101 -16.81141 -16.37105 -16.12552 -16.04391 -15.86655 -15.43566 -14.56086 -14.46996 -14.23851 -14.19572 -14.11896 -13.38764 -13.12897 -12.94971 -12.73320 -12.61003 -12.36472 -12.34757 -11.91019 -11.78308 -11.59734 -11.48013 -11.04038 -10.94266 -10.81372 -10.43430 -10.01247 -9.95691 -9.77580 -9.75051 -9.69523 -9.21058 -8.94405 -8.53433 -6.03520 -4.02317 -0.12119 0.60898 1.09992 1.33979 1.43506 2.63300 2.85282 3.00336 3.32201 3.39613 3.43044 3.74248 3.85395 4.10555 4.16497 4.27496 4.36900 4.45856 4.54657 4.60272 4.76491 4.83972 4.98030 5.03769 5.23349 5.28536 5.29680 5.33573 5.48406 5.48833 5.52915 5.67055 5.85360 5.88785 5.89704 6.27201 6.30525 6.44082 6.63168 6.82771 7.25641 7.36529 7.44176 7.74469 7.81950 8.53835 9.01539 9.57888 11.09726 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.048656 B = 0.001809 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.326376 B =15470.809099 C =16015.081298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 C -0.100 4.100 4 C -0.097 4.097 5 C 0.125 3.875 6 N -0.311 5.311 7 C 0.098 3.902 8 C -0.073 4.073 9 C 0.553 3.447 10 O -0.507 6.507 11 O -0.334 6.334 12 C 0.066 3.934 13 C -0.102 4.102 14 C -0.010 4.010 15 C -0.521 4.521 16 H 0.075 0.925 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 N -0.167 5.167 24 N -0.054 5.054 25 C -0.119 4.119 26 C -0.097 4.097 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.211 0.789 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 40 H 0.136 0.864 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.905 -0.306 -0.016 38.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.080 4.080 3 C -0.118 4.118 4 C -0.116 4.116 5 C 0.034 3.966 6 N -0.088 5.088 7 C -0.055 4.055 8 C -0.209 4.209 9 C 0.395 3.605 10 O -0.395 6.395 11 O -0.248 6.248 12 C -0.007 4.007 13 C -0.140 4.140 14 C -0.048 4.048 15 C -0.559 4.559 16 H 0.093 0.907 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 N -0.042 5.042 24 N -0.034 5.034 25 C -0.139 4.139 26 C -0.116 4.116 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.228 0.772 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.154 0.846 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -38.548 0.834 -0.008 38.557 hybrid contribution 0.244 -2.171 -0.028 2.185 sum -38.304 -1.337 -0.036 38.327 Atomic orbital electron populations 1.20854 0.90327 1.03393 1.02889 1.20152 0.96866 0.92960 0.98003 1.21024 0.92864 0.98426 0.99498 1.20994 0.94451 0.96952 0.99249 1.17608 0.77145 0.95945 1.05891 1.47679 1.06184 1.06479 1.48450 1.23307 0.89433 0.95173 0.97611 1.20391 0.92233 0.90284 1.17978 1.19300 0.83102 0.85146 0.72958 1.90871 1.87706 1.14106 1.46825 1.86655 1.14079 1.41660 1.82448 1.23617 0.82105 0.92674 1.02308 1.21575 0.90294 0.98997 1.03134 1.19523 0.93062 0.95505 0.96672 1.21074 0.88717 0.95059 1.51071 0.90734 1.25018 0.95673 0.98217 0.94504 1.69914 0.97629 1.35569 1.50931 0.86784 0.77711 0.86283 0.78559 1.20235 1.21313 1.18963 1.74869 1.11690 1.09999 1.07640 1.82168 0.93136 1.05605 1.22446 1.20966 0.94997 0.96089 1.01885 1.20930 0.92629 0.98446 0.99604 0.90579 0.91061 0.91038 0.84485 0.83828 0.77207 0.91203 0.91214 0.91349 0.91327 0.96247 0.96680 0.92683 0.84574 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.24 10.01 36.01 0.36 0.12 16 2 C -0.08 -0.33 5.88 -104.59 -0.62 -0.95 16 3 C -0.10 -0.48 9.69 -39.61 -0.38 -0.87 16 4 C -0.10 -0.66 9.68 -39.40 -0.38 -1.05 16 5 C 0.13 0.98 6.69 -83.58 -0.56 0.42 16 6 N -0.31 -3.18 3.82 -10.41 -0.04 -3.22 16 7 C 0.10 0.98 10.60 -16.69 -0.18 0.80 16 8 C -0.07 -1.00 7.02 -83.56 -0.59 -1.58 16 9 C 0.55 8.74 7.96 34.45 0.27 9.01 16 10 O -0.51 -8.40 16.65 -19.28 -0.32 -8.72 16 11 O -0.33 -5.86 10.23 -40.63 -0.42 -6.28 16 12 C 0.07 1.17 5.48 37.16 0.20 1.38 16 13 C -0.10 -2.10 5.53 -26.73 -0.15 -2.25 16 14 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 15 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 16 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 1.98 5.47 -17.81 -0.10 1.88 16 18 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 19 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 23 N -0.17 -2.51 12.39 32.84 0.41 -2.10 16 24 N -0.05 -0.71 13.12 60.35 0.79 0.09 16 25 C -0.12 -0.65 9.47 -39.41 -0.37 -1.02 16 26 C -0.10 -0.41 9.69 -39.61 -0.38 -0.79 16 27 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.07 0.10 8.08 -51.93 -0.42 -0.32 16 29 H 0.07 0.11 8.08 -51.93 -0.42 -0.31 16 30 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 31 H 0.14 1.00 7.73 -52.49 -0.41 0.60 16 32 H 0.21 1.27 7.13 -52.49 -0.37 0.90 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 38 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.14 0.48 6.81 -52.48 -0.36 0.12 16 41 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -34.60 360.98 -6.64 -41.24 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -5.29 Total: -5.69 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.31 Total: -10.65 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 1.93 Total: -32.53 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.74 Total: -15.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.60 -6.64 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046521649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.484 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds