Wall clock time and date at job start Tue Mar 31 2020 11:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38276 * 119.93419 * 2 1 4 4 C 1.38128 * 120.06396 * 180.02562 * 3 2 1 5 5 C 1.38827 * 119.93296 * 359.97438 * 4 3 2 6 6 N 1.40222 * 120.06191 * 179.97438 * 5 4 3 7 7 C 1.35048 * 126.60115 * 180.31861 * 6 5 4 8 8 C 1.36694 * 106.78675 * 180.17100 * 7 6 5 9 9 C 1.47376 * 125.77422 * 179.84065 * 8 7 6 10 10 O 1.21514 * 120.00050 * 359.71156 * 9 8 7 11 11 O 1.34751 * 119.99688 * 179.71537 * 9 8 7 12 12 C 1.45206 * 116.99894 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47091 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.46891 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00275 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99529 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99910 * 19 17 15 21 21 H 1.48503 * 109.46827 * 209.99657 * 19 17 15 22 22 H 1.48501 * 109.47006 * 329.99902 * 19 17 15 23 23 N 1.34456 * 108.44725 * 359.57125 * 8 7 6 24 24 N 1.28748 * 109.56505 * 0.26565 * 23 8 7 25 25 C 1.38824 * 119.86838 * 0.25548 * 5 4 3 26 26 C 1.38127 * 119.93722 * 359.51398 * 25 5 4 27 27 H 1.09004 * 109.47025 * 90.00209 * 1 2 3 28 28 H 1.09001 * 109.47265 * 210.00067 * 1 2 3 29 29 H 1.08999 * 109.47136 * 329.99896 * 1 2 3 30 30 H 1.08001 * 119.96666 * 359.97091 * 3 2 1 31 31 H 1.07996 * 120.03020 * 179.97438 * 4 3 2 32 32 H 1.07997 * 126.60715 * 0.02562 * 7 6 5 33 33 H 1.09001 * 109.47157 * 299.99725 * 12 11 9 34 34 H 1.09004 * 109.47122 * 59.99858 * 12 11 9 35 35 H 1.08992 * 109.47056 * 300.00206 * 13 12 11 36 36 H 1.09004 * 109.47006 * 60.00090 * 13 12 11 37 37 H 1.09001 * 109.47372 * 300.00036 * 14 13 12 38 38 H 1.08996 * 109.47261 * 60.00575 * 14 13 12 39 39 H 0.96996 * 119.99496 * 180.02562 * 18 17 15 40 40 H 1.08008 * 120.03224 * 179.72250 * 25 5 4 41 41 H 1.07998 * 119.96819 * 180.23285 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5783 1.2014 -0.0005 5 6 4.2737 -0.0001 -0.0005 6 7 5.6760 -0.0001 -0.0016 7 6 6.4812 -1.0842 -0.0078 8 6 7.7672 -0.6209 -0.0025 9 6 8.9830 -1.4537 -0.0029 10 8 8.8896 -2.6653 -0.0031 11 8 10.1984 -0.8717 -0.0031 12 6 11.3517 -1.7538 -0.0030 13 6 12.6332 -0.9178 -0.0039 14 6 13.8484 -1.8473 -0.0031 15 6 15.1106 -1.0239 -0.0033 16 1 15.0519 0.0545 -0.0036 17 6 16.3404 -1.6474 -0.0022 18 7 17.4419 -0.9287 -0.0019 19 14 16.4420 -3.5126 -0.0011 20 1 16.4698 -4.0077 -1.4008 21 1 17.6793 -3.9404 0.7000 22 1 15.2578 -4.0724 0.6986 23 7 7.7351 0.7233 -0.0028 24 7 6.5120 1.1254 -0.0024 25 6 3.5782 -1.2015 -0.0054 26 6 2.1969 -1.1984 0.0000 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6554 2.1327 -0.0005 31 1 4.1166 2.1376 -0.0010 32 1 6.1692 -2.1181 -0.0132 33 1 11.3283 -2.3824 0.8872 34 1 11.3281 -2.3829 -0.8929 35 1 12.6564 -0.2895 -0.8942 36 1 12.6570 -0.2884 0.8858 37 1 13.8250 -2.4754 0.8875 38 1 13.8249 -2.4769 -0.8925 39 1 18.3071 -1.3673 -0.0015 40 1 4.1166 -2.1378 -0.0099 41 1 1.6553 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046521649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:50 Heat of formation + Delta-G solvation = 9.657401 kcal Electronic energy + Delta-G solvation = -23766.510793 eV Core-core repulsion = 20033.780984 eV Total energy + Delta-G solvation = -3732.729809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.72280 -41.34741 -40.44099 -37.89715 -36.26422 -35.91312 -33.88109 -32.93118 -32.41866 -31.94206 -29.52015 -27.99404 -26.10064 -24.72482 -24.51148 -23.57827 -22.20702 -22.09243 -21.65045 -19.97609 -19.01364 -18.29451 -17.93294 -17.63930 -17.12433 -16.58840 -16.38522 -16.30015 -16.03628 -15.67674 -15.03576 -14.80406 -14.74397 -14.71245 -14.55923 -13.99925 -13.82831 -13.57368 -13.55372 -13.06644 -12.85677 -12.81947 -12.60630 -12.46147 -12.23532 -12.11616 -12.05099 -12.02032 -11.76036 -11.68008 -11.40607 -11.35466 -10.83216 -10.76412 -10.13105 -9.45437 -8.29084 -6.34621 -0.75539 0.13174 0.23663 0.63069 0.69672 1.38303 1.40143 1.46887 1.52380 1.74670 2.37318 2.59766 2.89009 3.05996 3.13722 3.52420 3.55640 3.78986 3.87356 3.92506 4.00791 4.01772 4.17123 4.27207 4.38789 4.41268 4.46571 4.72652 4.74889 4.75404 4.88305 4.95319 4.97695 5.03729 5.17664 5.22019 5.26767 5.40575 5.46559 5.49935 5.53309 5.62841 5.84571 6.26687 6.39116 6.68595 6.73521 7.29735 8.87741 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.048656 B = 0.001809 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.326376 B =15470.809099 C =16015.081298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.105 4.105 4 C -0.109 4.109 5 C 0.088 3.912 6 N -0.297 5.297 7 C 0.123 3.877 8 C -0.101 4.101 9 C 0.557 3.443 10 O -0.516 6.516 11 O -0.349 6.349 12 C 0.075 3.925 13 C -0.095 4.095 14 C -0.007 4.007 15 C -0.537 4.537 16 H 0.031 0.969 17 C 0.004 3.996 18 N -0.951 5.951 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.243 1.243 23 N -0.204 5.204 24 N -0.075 5.075 25 C -0.113 4.113 26 C -0.099 4.099 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.155 0.845 31 H 0.132 0.868 32 H 0.252 0.748 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.267 0.733 40 H 0.159 0.841 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -42.521 -3.327 -0.025 42.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.129 4.129 5 C -0.002 4.002 6 N -0.074 5.074 7 C -0.032 4.032 8 C -0.237 4.237 9 C 0.400 3.600 10 O -0.404 6.404 11 O -0.265 6.265 12 C 0.002 3.998 13 C -0.133 4.133 14 C -0.045 4.045 15 C -0.575 4.575 16 H 0.050 0.950 17 C -0.193 4.193 18 N -0.591 5.591 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.166 1.166 23 N -0.078 5.078 24 N -0.055 5.055 25 C -0.134 4.134 26 C -0.117 4.117 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.172 0.828 31 H 0.150 0.850 32 H 0.268 0.732 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.176 0.824 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -42.214 -2.153 -0.017 42.269 hybrid contribution 1.132 -1.110 -0.027 1.586 sum -41.082 -3.264 -0.044 41.212 Atomic orbital electron populations 1.20930 0.88541 1.04366 1.03662 1.20529 0.98200 0.92692 0.95967 1.21269 0.92056 0.99816 0.99209 1.21081 0.95457 0.96507 0.99888 1.17990 0.75854 0.97374 1.08992 1.47829 1.07116 1.05826 1.46606 1.23844 0.87888 0.96505 0.94963 1.20349 0.92678 0.90018 1.20698 1.19501 0.82857 0.85307 0.72320 1.90849 1.87723 1.14329 1.47522 1.86629 1.14814 1.42042 1.82982 1.23345 0.81194 0.91921 1.03370 1.21343 0.90994 0.98562 1.02397 1.19439 0.91987 0.95537 0.97497 1.21430 0.91349 0.93845 1.50915 0.95029 1.26051 0.95006 1.04337 0.93894 1.70076 0.98480 1.38206 1.52384 0.85615 0.78564 0.78872 0.79362 1.18984 1.20924 1.16577 1.74832 1.12841 1.11060 1.09026 1.82087 0.92980 1.06895 1.23519 1.21285 0.95643 0.95918 1.00531 1.21321 0.92220 0.99630 0.98550 0.89745 0.89864 0.90401 0.82761 0.85004 0.73164 0.90158 0.90088 0.92169 0.92199 0.95238 0.95339 0.92409 0.82386 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.09 10.01 71.24 0.71 0.62 16 2 C -0.07 -0.41 5.88 -19.85 -0.12 -0.52 16 3 C -0.11 -0.85 9.69 22.25 0.22 -0.63 16 4 C -0.11 -1.46 9.68 22.38 0.22 -1.24 16 5 C 0.09 1.26 6.69 38.08 0.25 1.52 16 6 N -0.30 -5.86 3.82 -186.86 -0.71 -6.57 16 7 C 0.12 2.25 10.60 83.84 0.89 3.14 16 8 C -0.10 -2.72 7.02 40.79 0.29 -2.44 16 9 C 0.56 17.25 7.96 70.23 0.56 17.80 16 10 O -0.52 -16.22 16.65 19.79 0.33 -15.89 16 11 O -0.35 -12.26 10.23 -56.62 -0.58 -12.83 16 12 C 0.07 2.59 5.48 71.98 0.39 2.98 16 13 C -0.10 -3.93 5.53 30.59 0.17 -3.76 16 14 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 15 C -0.54 -31.80 9.66 25.60 0.25 -31.55 16 16 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 17 C 0.00 0.23 5.47 84.66 0.46 0.69 16 18 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 19 Si 0.95 44.46 27.47 68.60 1.88 46.34 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.24 -10.37 6.54 99.48 0.65 -9.71 16 23 N -0.20 -6.30 12.39 -50.02 -0.62 -6.92 16 24 N -0.08 -2.03 13.12 37.02 0.49 -1.54 16 25 C -0.11 -0.91 9.47 22.38 0.21 -0.70 16 26 C -0.10 -0.49 9.69 22.25 0.22 -0.27 16 27 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.08 -0.09 8.08 -2.39 -0.02 -0.11 16 29 H 0.08 -0.01 8.08 -2.39 -0.02 -0.03 16 30 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.13 1.97 7.73 -2.91 -0.02 1.95 16 32 H 0.25 2.15 7.13 -2.91 -0.02 2.13 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 38 H 0.03 1.27 7.57 -2.39 -0.02 1.26 16 39 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.16 0.48 6.81 -2.91 -0.02 0.46 16 41 H 0.17 -0.11 8.06 -2.91 -0.02 -0.13 16 Total: -1.00 -77.75 360.98 6.92 -70.83 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 0.99 Total: 1.61 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 4.84 Total: -14.58 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -0.55 Total: -75.48 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.25 Total: -28.73 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -77.75 6.92 -70.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046521649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.488 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds