Wall clock time and date at job start Tue Mar 31 2020 10:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99838 * 2 1 4 4 H 1.48504 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47404 * 300.00188 * 3 2 1 6 6 H 1.48500 * 109.46932 * 60.00422 * 3 2 1 7 7 C 1.37881 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46826 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47109 * 180.02562 * 11 10 9 13 13 C 1.34744 * 117.00095 * 179.97438 * 12 11 10 14 14 O 1.21498 * 120.00059 * 0.02562 * 13 12 11 15 15 C 1.47509 * 119.99757 * 179.97438 * 13 12 11 16 16 C 1.41562 * 126.44897 * 180.02562 * 15 13 12 17 17 C 1.35361 * 105.55385 * 179.74226 * 16 15 13 18 18 N 1.35841 * 107.14619 * 0.37464 * 17 16 15 19 19 C 1.40167 * 124.94845 * 179.87394 * 18 17 16 20 20 C 1.38723 * 120.10385 * 5.76063 * 19 18 17 21 21 C 1.38166 * 120.00449 * 179.97438 * 20 19 18 22 22 C 1.38331 * 120.21471 * 0.05017 * 21 20 19 23 23 C 1.38162 * 120.20547 * 359.67305 * 22 21 20 24 24 C 1.38794 * 119.98788 * 0.58064 * 23 22 21 25 25 N 1.39720 * 120.10261 * 179.72515 * 24 23 22 26 26 N 1.28478 * 110.09866 * 359.60171 * 18 17 16 27 27 H 0.97000 * 120.00275 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46956 * 59.99689 * 9 7 2 29 29 H 1.09002 * 109.47212 * 299.99681 * 9 7 2 30 30 H 1.09002 * 109.46998 * 59.99877 * 10 9 7 31 31 H 1.09002 * 109.47193 * 299.99972 * 10 9 7 32 32 H 1.08995 * 109.47307 * 60.00596 * 11 10 9 33 33 H 1.09002 * 109.47235 * 300.00012 * 11 10 9 34 34 H 1.07998 * 127.22375 * 359.97438 * 16 15 13 35 35 H 1.07999 * 126.42207 * 180.21911 * 17 16 15 36 36 H 1.08002 * 119.99712 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.89241 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.89800 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.00920 * 180.30075 * 23 22 21 40 40 H 0.97001 * 119.99387 * 200.11865 * 25 24 23 41 41 H 0.96997 * 119.99653 * 19.83596 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9870 -0.0033 12 8 2.4238 -6.0907 -0.0037 13 6 1.9088 -7.3358 -0.0036 14 8 0.7043 -7.4950 -0.0037 15 6 2.8074 -8.5056 -0.0046 16 6 2.4167 -9.8663 -0.0051 17 6 3.5699 -10.5750 -0.0118 18 7 4.5908 -9.6788 -0.0065 19 6 5.9522 -10.0125 -0.0081 20 6 6.3437 -11.3372 -0.1360 21 6 7.6862 -11.6637 -0.1379 22 6 8.6437 -10.6734 -0.0115 23 6 8.2637 -9.3507 0.1107 24 6 6.9174 -9.0136 0.1190 25 7 6.5303 -7.6773 0.2482 26 7 4.1266 -8.4808 -0.0055 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5562 -0.8919 29 1 0.6240 -2.5575 0.8880 30 1 2.8719 -3.6051 0.8873 31 1 2.8719 -3.6035 -0.8927 32 1 0.8534 -5.0443 -0.8931 33 1 0.8539 -5.0453 0.8869 34 1 1.4099 -10.2569 -0.0046 35 1 3.6612 -11.6511 -0.0175 36 1 5.5991 -12.1133 -0.2342 37 1 7.9890 -12.6956 -0.2380 38 1 9.6917 -10.9345 -0.0132 39 1 9.0141 -8.5796 0.2044 40 1 5.6326 -7.4589 0.5435 41 1 7.1606 -6.9682 0.0465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:53 Heat of formation + Delta-G solvation = 24.935793 kcal Electronic energy + Delta-G solvation = -24547.221869 eV Core-core repulsion = 20815.154581 eV Total energy + Delta-G solvation = -3732.067288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.24005 -40.03446 -39.52081 -36.40260 -34.94484 -34.02953 -33.82770 -31.70917 -31.16739 -30.15293 -28.78331 -27.16646 -25.03650 -23.83555 -23.03203 -21.97017 -21.27281 -20.47809 -20.18009 -18.66722 -17.59888 -17.25354 -16.92693 -16.64072 -16.40737 -15.94896 -15.86542 -15.16593 -14.74113 -14.47225 -14.43628 -14.01736 -13.89098 -13.55406 -13.41761 -13.09934 -12.31456 -12.18322 -12.13104 -11.87886 -11.78650 -11.28584 -10.98311 -10.81760 -10.74067 -10.62902 -10.49716 -10.48113 -10.37115 -9.70485 -9.60343 -9.51471 -9.14150 -8.91327 -8.38328 -7.78907 -6.02847 -4.05650 0.41263 1.06638 1.41903 1.93130 1.99905 2.88345 3.11631 3.30385 3.37735 3.38322 3.42031 3.60335 3.94167 4.34689 4.44139 4.47670 4.58736 4.83956 4.95418 4.97551 5.08682 5.30507 5.33190 5.38422 5.40487 5.60318 5.64100 5.67344 5.80844 5.99840 6.06542 6.08562 6.24681 6.46615 6.56118 6.62335 6.82880 6.99561 7.22324 7.48298 7.61783 7.67160 7.72841 7.94987 7.96484 8.36991 9.00780 9.58507 11.08656 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.002438 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.799045 B =11483.233037 C =13063.967360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.068 3.932 12 O -0.344 6.344 13 C 0.549 3.451 14 O -0.500 6.500 15 C 0.008 3.992 16 C -0.165 4.165 17 C -0.019 4.019 18 N -0.213 5.213 19 C 0.039 3.961 20 C -0.074 4.074 21 C -0.162 4.162 22 C -0.065 4.065 23 C -0.184 4.184 24 C 0.239 3.761 25 N -0.861 5.861 26 N -0.245 5.245 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.416 0.584 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.853 -27.362 0.205 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.005 4.005 12 O -0.259 6.259 13 C 0.391 3.609 14 O -0.386 6.386 15 C -0.149 4.149 16 C -0.192 4.192 17 C -0.159 4.159 18 N 0.005 4.995 19 C -0.056 4.056 20 C -0.095 4.095 21 C -0.183 4.183 22 C -0.085 4.085 23 C -0.207 4.207 24 C 0.129 3.871 25 N -0.406 5.406 26 N -0.082 5.082 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.189 0.811 35 H 0.205 0.795 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.256 0.744 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 16.214 -26.480 0.221 31.050 hybrid contribution -0.544 0.773 -0.012 0.945 sum 15.670 -25.707 0.209 30.107 Atomic orbital electron populations 1.69973 1.06071 1.26635 1.50657 1.25035 0.94884 0.99366 0.95248 0.86494 0.80073 0.83592 0.77594 1.19700 1.20974 1.20982 1.21204 0.93138 0.90661 1.50809 0.92406 1.19063 0.93850 0.90716 0.97738 1.21761 0.99936 0.90871 1.01992 1.23584 0.91208 0.83364 1.02369 1.86616 1.42118 1.14390 1.82819 1.19484 0.85669 0.82614 0.73166 1.90863 1.14968 1.86739 1.46011 1.20973 0.89248 0.93119 1.11598 1.21778 0.99811 0.90479 1.07098 1.22999 0.86138 0.97885 1.08875 1.42702 1.05134 1.03227 1.48406 1.17307 0.78054 0.94434 1.15831 1.20640 0.97386 0.92578 0.98908 1.20735 0.91416 0.99906 1.06217 1.21067 0.99851 0.92036 0.95517 1.20712 0.93104 0.97533 1.09343 1.17537 0.91839 0.85092 0.92680 1.43300 1.19826 1.02659 1.74807 1.73067 1.11751 1.04176 1.19227 0.92951 0.96177 0.96166 0.92140 0.92123 0.91273 0.91268 0.81087 0.79463 0.84977 0.85102 0.85284 0.84929 0.74424 0.77226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 11 C 0.07 1.29 5.48 37.16 0.20 1.50 16 12 O -0.34 -6.25 10.23 -40.61 -0.42 -6.67 16 13 C 0.55 9.46 7.96 34.51 0.27 9.73 16 14 O -0.50 -9.43 16.71 -19.26 -0.32 -9.75 16 15 C 0.01 0.11 7.16 -82.77 -0.59 -0.48 16 16 C -0.16 -1.86 10.80 -39.34 -0.42 -2.28 16 17 C -0.02 -0.17 10.77 -16.80 -0.18 -0.35 16 18 N -0.21 -2.42 3.52 -10.42 -0.04 -2.46 16 19 C 0.04 0.39 6.67 -83.40 -0.56 -0.17 16 20 C -0.07 -0.52 9.43 -39.43 -0.37 -0.89 16 21 C -0.16 -0.93 10.04 -39.57 -0.40 -1.33 16 22 C -0.07 -0.39 10.04 -39.58 -0.40 -0.78 16 23 C -0.18 -1.37 9.92 -39.40 -0.39 -1.76 16 24 C 0.24 2.35 6.76 -83.59 -0.57 1.79 16 25 N -0.86 -8.97 8.64 32.51 0.28 -8.69 16 26 N -0.25 -3.41 8.53 33.41 0.28 -3.13 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.19 0.87 7.00 -52.49 -0.37 0.51 16 36 H 0.13 0.58 6.68 -52.49 -0.35 0.23 16 37 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.42 5.18 5.84 -40.82 -0.24 4.94 16 41 H 0.40 3.32 8.89 -40.82 -0.36 2.95 16 LS Contribution 357.38 15.07 5.39 5.39 Total: -1.00 -33.87 357.38 -8.29 -42.16 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.09 Total: 3.27 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -4.10 Total: -10.56 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 1.27 Total: -40.53 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.74 Total: -16.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.87 -8.29 -42.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.098 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds