Wall clock time and date at job start Tue Mar 31 2020 10:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00179 * 2 1 4 4 H 1.48508 * 109.47227 * 240.00243 * 3 2 1 5 5 H 1.48501 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47420 * 120.00228 * 3 2 1 7 7 C 1.38651 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00353 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99972 * 174.58937 * 9 7 2 11 11 C 1.38955 * 120.03366 * 173.82073 * 10 9 7 12 12 C 1.38122 * 120.07148 * 179.77577 * 11 10 9 13 13 C 1.38206 * 120.13862 * 0.50815 * 12 11 10 14 14 C 1.38920 * 120.06462 * 359.74559 * 13 12 11 15 15 N 1.39921 * 120.03360 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00297 * 326.32631 * 15 14 13 17 17 O 1.21295 * 119.99762 * 354.78375 * 16 15 14 18 18 C 1.50702 * 120.00390 * 174.78346 * 16 15 14 19 19 C 1.53005 * 109.47234 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47170 * 180.02562 * 19 18 16 21 21 N 1.46496 * 109.47335 * 180.02562 * 20 19 18 22 22 C 1.34943 * 126.04220 * 124.99937 * 21 20 19 23 23 C 1.35312 * 107.75022 * 179.97438 * 22 21 20 24 24 C 1.39868 * 107.91958 * 0.02562 * 23 22 21 25 25 N 1.30837 * 108.20330 * 359.73069 * 24 23 22 26 26 C 1.38730 * 120.03629 * 354.10685 * 10 9 7 27 27 H 0.97004 * 119.99573 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96091 * 0.02795 * 11 10 9 29 29 H 1.07997 * 119.93194 * 180.25727 * 12 11 10 30 30 H 1.07999 * 119.96778 * 179.76825 * 13 12 11 31 31 H 0.96999 * 119.99973 * 146.32491 * 15 14 13 32 32 H 1.08998 * 109.47198 * 300.00192 * 18 16 15 33 33 H 1.08996 * 109.46805 * 60.00424 * 18 16 15 34 34 H 1.08998 * 109.47197 * 300.00207 * 19 18 16 35 35 H 1.09002 * 109.46786 * 60.00057 * 19 18 16 36 36 H 1.08998 * 109.47145 * 300.00135 * 20 19 18 37 37 H 1.09004 * 109.47075 * 59.99776 * 20 19 18 38 38 H 1.08011 * 126.12350 * 359.97438 * 22 21 20 39 39 H 1.08003 * 126.04125 * 179.97438 * 23 22 21 40 40 H 1.08002 * 125.89807 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.06845 * 359.94828 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2126 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0692 -3.5042 -0.1151 11 6 1.4553 -4.7449 0.0065 12 6 2.2012 -5.9010 -0.1146 13 6 3.5617 -5.8280 -0.3465 14 6 4.1822 -4.5907 -0.4638 15 7 5.5596 -4.5176 -0.6992 16 6 6.3832 -5.4463 -0.1743 17 8 5.9444 -6.2900 0.5786 18 6 7.8494 -5.4366 -0.5228 19 6 8.5533 -6.5862 0.2011 20 6 10.0418 -6.5759 -0.1522 21 7 10.7157 -7.6769 0.5404 22 6 11.4635 -8.6397 -0.0383 23 6 11.9061 -9.4625 0.9405 24 6 11.4114 -8.9865 2.1592 25 7 10.7022 -7.9131 1.9212 26 6 3.4347 -3.4275 -0.3479 27 1 -0.4850 0.8401 -0.0004 28 1 0.3930 -4.8051 0.1919 29 1 1.7209 -6.8641 -0.0238 30 1 4.1428 -6.7338 -0.4370 31 1 5.9216 -3.7984 -1.2401 32 1 7.9677 -5.5581 -1.5995 33 1 8.2900 -4.4889 -0.2135 34 1 8.4350 -6.4642 1.2778 35 1 8.1126 -7.5341 -0.1078 36 1 10.1605 -6.6976 -1.2289 37 1 10.4821 -5.6279 0.1570 38 1 11.6714 -8.7363 -1.0938 39 1 12.5303 -10.3333 0.8047 40 1 11.5880 -9.4266 3.1296 41 1 3.9149 -2.4644 -0.4390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050331825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:40 Heat of formation + Delta-G solvation = 40.745500 kcal Electronic energy + Delta-G solvation = -24215.494963 eV Core-core repulsion = 20484.113236 eV Total energy + Delta-G solvation = -3731.381728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.36279 -40.25770 -38.71523 -36.60125 -35.39359 -34.26170 -32.28796 -31.96533 -30.29933 -29.45173 -28.67755 -26.99866 -25.32004 -23.44693 -21.86533 -21.66676 -21.30587 -20.69620 -20.00437 -18.08596 -17.87734 -17.41170 -16.66587 -16.30806 -15.62330 -15.33683 -15.01885 -14.67239 -14.58885 -14.29141 -14.08507 -13.81574 -13.64161 -13.54374 -13.06176 -13.02389 -12.62485 -12.51858 -12.18891 -12.04182 -11.74941 -11.60104 -11.26888 -11.13229 -11.04566 -10.82530 -10.77643 -10.47872 -9.97795 -9.69964 -9.59941 -9.46862 -8.86872 -8.82479 -7.76369 -7.18534 -6.47052 -4.06972 1.64160 1.92736 2.21694 2.34626 2.61013 2.80460 3.09633 3.11045 3.14023 3.19954 3.93682 4.13234 4.41188 4.47593 4.55710 4.60178 4.76060 4.85647 4.95632 5.01222 5.08561 5.20668 5.25297 5.30329 5.48260 5.68301 5.69782 5.74463 5.95323 5.97117 6.05294 6.21925 6.25295 6.39140 6.60691 6.73320 6.93591 6.96203 7.09206 7.28300 7.39353 7.45571 7.65239 7.78389 7.96896 8.26673 8.98049 9.68348 10.70831 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.002211 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.430045 B =12658.551172 C =13597.144622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.089 0.911 9 O -0.176 6.176 10 C 0.168 3.832 11 C -0.199 4.199 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.179 3.821 15 N -0.670 5.670 16 C 0.509 3.491 17 O -0.517 6.517 18 C -0.137 4.137 19 C -0.116 4.116 20 C 0.133 3.867 21 N -0.371 5.371 22 C 0.051 3.949 23 C -0.278 4.278 24 C 0.041 3.959 25 N -0.290 5.290 26 C -0.257 4.257 27 H 0.271 0.729 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.407 0.593 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.146 0.854 40 H 0.182 0.818 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.152 -12.414 -4.264 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.107 0.893 9 O -0.079 6.079 10 C 0.113 3.887 11 C -0.219 4.219 12 C -0.082 4.082 13 C -0.227 4.227 14 C 0.086 3.914 15 N -0.315 5.315 16 C 0.296 3.704 17 O -0.392 6.392 18 C -0.178 4.178 19 C -0.155 4.155 20 C 0.012 3.988 21 N -0.153 5.153 22 C -0.095 4.095 23 C -0.307 4.307 24 C -0.145 4.145 25 N -0.112 5.112 26 C -0.278 4.278 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.242 0.758 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.190 0.810 39 H 0.164 0.836 40 H 0.199 0.801 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.668 -11.761 -3.278 24.005 hybrid contribution 1.246 0.596 -0.736 1.565 sum 21.914 -11.165 -4.014 24.920 Atomic orbital electron populations 1.70028 1.05922 1.27774 1.45904 1.25279 0.95848 0.98792 0.96575 0.85796 0.78725 0.79891 0.79082 1.19583 1.20249 1.19535 1.21212 0.91610 0.80888 1.53165 0.89339 1.84020 1.33912 1.11370 1.78589 1.19091 0.89545 0.88119 0.91912 1.20258 1.00173 0.90000 1.11484 1.20534 0.93121 0.96964 0.97610 1.20522 0.94636 0.95800 1.11710 1.17407 0.81265 0.93937 0.98762 1.43525 1.05983 1.29701 1.52288 1.20605 0.88307 0.81347 0.80150 1.90754 1.77346 1.37065 1.34042 1.21578 0.92366 1.01249 1.02624 1.21586 0.91858 0.98975 1.03053 1.21774 0.93059 0.87977 0.96026 1.48748 1.39084 1.22387 1.05084 1.22588 0.96100 0.90999 0.99836 1.21521 1.11687 1.05484 0.92028 1.23925 0.96726 0.94188 0.99675 1.77416 1.22889 1.18984 0.91880 1.20816 0.94813 0.97209 1.14982 0.91946 0.86349 0.86610 0.86457 0.75836 0.88389 0.88309 0.89365 0.90435 0.88501 0.89533 0.81033 0.83642 0.80113 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.39 -10.81 9.44 30.88 0.29 -10.52 16 8 H 0.09 2.24 5.30 -52.49 -0.28 1.96 16 9 O -0.18 -4.98 9.76 0.04 0.00 -4.98 16 10 C 0.17 4.06 6.64 -39.13 -0.26 3.80 16 11 C -0.20 -4.30 9.99 -39.36 -0.39 -4.69 16 12 C -0.06 -1.21 10.03 -39.64 -0.40 -1.60 16 13 C -0.21 -3.96 8.65 -39.34 -0.34 -4.30 16 14 C 0.18 3.39 6.27 -83.72 -0.52 2.87 16 15 N -0.67 -9.55 5.34 -9.88 -0.05 -9.61 16 16 C 0.51 6.95 7.57 -10.99 -0.08 6.86 16 17 O -0.52 -9.32 13.69 5.54 0.08 -9.24 16 18 C -0.14 -1.09 5.70 -27.88 -0.16 -1.25 16 19 C -0.12 -1.07 4.69 -26.73 -0.13 -1.20 16 20 C 0.13 0.89 6.51 -4.05 -0.03 0.87 16 21 N -0.37 -3.51 3.68 -61.37 -0.23 -3.73 16 22 C 0.05 0.39 11.45 -17.23 -0.20 0.19 16 23 C -0.28 -2.23 10.80 -40.01 -0.43 -2.66 16 24 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 25 N -0.29 -3.46 12.42 30.62 0.38 -3.08 16 26 C -0.26 -5.51 9.04 -39.21 -0.35 -5.87 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 29 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.12 2.20 6.43 -52.49 -0.34 1.86 16 31 H 0.41 4.35 8.82 -40.82 -0.36 3.99 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.10 0.35 8.07 -51.93 -0.42 -0.07 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.13 2.71 5.71 -52.48 -0.30 2.41 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -36.22 357.30 -7.06 -43.29 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.05 Total: 7.47 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -3.31 Total: -16.35 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.86 Total: -40.70 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.23 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.22 -7.06 -43.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050331825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.031 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds