Wall clock time and date at job start Tue Mar 31 2020 10:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00179 * 2 1 4 4 H 1.48508 * 109.47227 * 240.00243 * 3 2 1 5 5 H 1.48501 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47420 * 120.00228 * 3 2 1 7 7 C 1.38651 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00353 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99972 * 174.58937 * 9 7 2 11 11 C 1.38955 * 120.03366 * 173.82073 * 10 9 7 12 12 C 1.38122 * 120.07148 * 179.77577 * 11 10 9 13 13 C 1.38206 * 120.13862 * 0.50815 * 12 11 10 14 14 C 1.38920 * 120.06462 * 359.74559 * 13 12 11 15 15 N 1.39921 * 120.03360 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00297 * 326.32631 * 15 14 13 17 17 O 1.21295 * 119.99762 * 354.78375 * 16 15 14 18 18 C 1.50702 * 120.00390 * 174.78346 * 16 15 14 19 19 C 1.53005 * 109.47234 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47170 * 180.02562 * 19 18 16 21 21 N 1.46496 * 109.47335 * 180.02562 * 20 19 18 22 22 C 1.34943 * 126.04220 * 124.99937 * 21 20 19 23 23 C 1.35312 * 107.75022 * 179.97438 * 22 21 20 24 24 C 1.39868 * 107.91958 * 0.02562 * 23 22 21 25 25 N 1.30837 * 108.20330 * 359.73069 * 24 23 22 26 26 C 1.38730 * 120.03629 * 354.10685 * 10 9 7 27 27 H 0.97004 * 119.99573 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96091 * 0.02795 * 11 10 9 29 29 H 1.07997 * 119.93194 * 180.25727 * 12 11 10 30 30 H 1.07999 * 119.96778 * 179.76825 * 13 12 11 31 31 H 0.96999 * 119.99973 * 146.32491 * 15 14 13 32 32 H 1.08998 * 109.47198 * 300.00192 * 18 16 15 33 33 H 1.08996 * 109.46805 * 60.00424 * 18 16 15 34 34 H 1.08998 * 109.47197 * 300.00207 * 19 18 16 35 35 H 1.09002 * 109.46786 * 60.00057 * 19 18 16 36 36 H 1.08998 * 109.47145 * 300.00135 * 20 19 18 37 37 H 1.09004 * 109.47075 * 59.99776 * 20 19 18 38 38 H 1.08011 * 126.12350 * 359.97438 * 22 21 20 39 39 H 1.08003 * 126.04125 * 179.97438 * 23 22 21 40 40 H 1.08002 * 125.89807 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.06845 * 359.94828 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2126 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0692 -3.5042 -0.1151 11 6 1.4553 -4.7449 0.0065 12 6 2.2012 -5.9010 -0.1146 13 6 3.5617 -5.8280 -0.3465 14 6 4.1822 -4.5907 -0.4638 15 7 5.5596 -4.5176 -0.6992 16 6 6.3832 -5.4463 -0.1743 17 8 5.9444 -6.2900 0.5786 18 6 7.8494 -5.4366 -0.5228 19 6 8.5533 -6.5862 0.2011 20 6 10.0418 -6.5759 -0.1522 21 7 10.7157 -7.6769 0.5404 22 6 11.4635 -8.6397 -0.0383 23 6 11.9061 -9.4625 0.9405 24 6 11.4114 -8.9865 2.1592 25 7 10.7022 -7.9131 1.9212 26 6 3.4347 -3.4275 -0.3479 27 1 -0.4850 0.8401 -0.0004 28 1 0.3930 -4.8051 0.1919 29 1 1.7209 -6.8641 -0.0238 30 1 4.1428 -6.7338 -0.4370 31 1 5.9216 -3.7984 -1.2401 32 1 7.9677 -5.5581 -1.5995 33 1 8.2900 -4.4889 -0.2135 34 1 8.4350 -6.4642 1.2778 35 1 8.1126 -7.5341 -0.1078 36 1 10.1605 -6.6976 -1.2289 37 1 10.4821 -5.6279 0.1570 38 1 11.6714 -8.7363 -1.0938 39 1 12.5303 -10.3333 0.8047 40 1 11.5880 -9.4266 3.1296 41 1 3.9149 -2.4644 -0.4390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050331825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:39 Heat of formation + Delta-G solvation = 15.818190 kcal Electronic energy + Delta-G solvation = -24216.575893 eV Core-core repulsion = 20484.113236 eV Total energy + Delta-G solvation = -3732.462657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97412 -41.56924 -40.37135 -38.22336 -36.14471 -35.64926 -34.24286 -32.72665 -31.11570 -30.83121 -30.23964 -27.86410 -27.22296 -24.41648 -23.52764 -22.84500 -21.92289 -21.38932 -21.25116 -19.80252 -19.31144 -18.44426 -17.66154 -17.20427 -17.12257 -16.75846 -16.25591 -15.96451 -15.81307 -15.57498 -15.34339 -15.16589 -14.76335 -14.56979 -14.40744 -14.15190 -13.60990 -13.56341 -13.39599 -13.13458 -12.88706 -12.81530 -12.69576 -12.66639 -12.41204 -12.14451 -11.92169 -11.52917 -11.46007 -11.25592 -10.92631 -10.70348 -10.34777 -9.46784 -9.37460 -8.89380 -8.46738 -6.15908 0.37943 0.67046 1.04475 1.35806 1.46096 1.52362 1.62543 1.68085 1.99565 2.09783 2.18289 2.82482 3.15699 3.46868 3.52516 3.66096 3.89879 4.08219 4.12682 4.15515 4.28047 4.32044 4.38805 4.42726 4.48239 4.61972 4.63243 4.75493 4.77097 4.93346 5.00388 5.04073 5.09626 5.18873 5.24820 5.37415 5.47183 5.64451 5.65170 5.78867 6.00586 6.15265 6.23682 6.47978 6.82492 6.97142 7.15030 7.76457 8.75924 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.002211 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.430045 B =12658.551172 C =13597.144622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.226 6.226 10 C 0.133 3.867 11 C -0.215 4.215 12 C -0.054 4.054 13 C -0.202 4.202 14 C 0.187 3.813 15 N -0.662 5.662 16 C 0.505 3.495 17 O -0.566 6.566 18 C -0.122 4.122 19 C -0.108 4.108 20 C 0.131 3.869 21 N -0.381 5.381 22 C 0.055 3.945 23 C -0.292 4.292 24 C 0.028 3.972 25 N -0.346 5.346 26 C -0.261 4.261 27 H 0.273 0.727 28 H 0.118 0.882 29 H 0.152 0.848 30 H 0.128 0.872 31 H 0.426 0.574 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.212 0.788 39 H 0.166 0.834 40 H 0.196 0.804 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.811 -12.825 -6.176 29.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.133 6.133 10 C 0.082 3.918 11 C -0.235 4.235 12 C -0.072 4.072 13 C -0.223 4.223 14 C 0.092 3.908 15 N -0.308 5.308 16 C 0.295 3.705 17 O -0.443 6.443 18 C -0.161 4.161 19 C -0.147 4.147 20 C 0.011 3.989 21 N -0.164 5.164 22 C -0.091 4.091 23 C -0.322 4.322 24 C -0.158 4.158 25 N -0.169 5.169 26 C -0.282 4.282 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.169 0.831 30 H 0.146 0.854 31 H 0.265 0.735 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.115 0.885 38 H 0.229 0.771 39 H 0.183 0.817 40 H 0.213 0.787 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 24.389 -12.203 -5.211 27.765 hybrid contribution 0.226 0.393 -0.143 0.476 sum 24.615 -11.810 -5.354 27.822 Atomic orbital electron populations 1.70185 1.08069 1.28903 1.48530 1.26618 0.96862 1.02807 0.95788 0.84642 0.77399 0.74146 0.79995 1.17595 1.19878 1.18424 1.21753 0.92479 0.81304 1.53420 0.87997 1.83986 1.35598 1.12527 1.81141 1.19625 0.90956 0.87964 0.93284 1.20473 1.00657 0.90132 1.12258 1.20915 0.93123 0.97541 0.95641 1.20841 0.94831 0.96355 1.10240 1.17466 0.83559 0.92880 0.96887 1.43558 1.04036 1.30788 1.52446 1.21715 0.90354 0.79759 0.78650 1.90740 1.78588 1.38871 1.36124 1.21627 0.87382 1.02089 1.05029 1.21436 0.94068 0.98508 1.00690 1.21991 0.90720 0.88018 0.98138 1.48991 1.39555 1.23352 1.04459 1.23281 0.94555 0.89725 1.01533 1.21893 1.12205 1.06464 0.91599 1.24365 0.96306 0.93892 1.01205 1.77340 1.24865 1.20643 0.94015 1.20870 0.94029 0.98299 1.15021 0.91827 0.86365 0.83060 0.85387 0.73529 0.83995 0.85281 0.93343 0.92501 0.84260 0.88450 0.77104 0.81657 0.78719 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.80 13.67 21.61 0.30 -55.51 16 2 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 3 Si 1.02 41.61 29.55 68.60 2.03 43.63 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.41 -23.58 9.44 67.92 0.64 -22.94 16 8 H 0.10 5.25 5.30 -2.91 -0.02 5.23 16 9 O -0.23 -13.52 9.76 -22.79 -0.22 -13.74 16 10 C 0.13 6.67 6.64 22.56 0.15 6.82 16 11 C -0.22 -9.48 9.99 22.41 0.22 -9.26 16 12 C -0.05 -1.98 10.03 22.23 0.22 -1.76 16 13 C -0.20 -7.45 8.65 22.43 0.19 -7.26 16 14 C 0.19 6.82 6.27 38.14 0.24 7.06 16 15 N -0.66 -17.13 5.34 -303.55 -1.62 -18.75 16 16 C 0.51 12.52 7.57 87.66 0.66 13.18 16 17 O -0.57 -19.78 13.69 -3.08 -0.04 -19.83 16 18 C -0.12 -1.43 5.70 29.85 0.17 -1.26 16 19 C -0.11 -1.77 4.69 30.59 0.14 -1.62 16 20 C 0.13 1.32 6.51 86.38 0.56 1.88 16 21 N -0.38 -6.43 3.68 -348.08 -1.28 -7.71 16 22 C 0.06 0.68 11.45 83.54 0.96 1.63 16 23 C -0.29 -4.17 10.80 21.99 0.24 -3.93 16 24 C 0.03 0.51 12.03 85.24 1.02 1.54 16 25 N -0.35 -8.18 12.42 -57.02 -0.71 -8.89 16 26 C -0.26 -11.23 9.04 22.51 0.20 -11.03 16 27 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 28 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 29 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.13 4.53 6.43 -2.91 -0.02 4.52 16 31 H 0.43 7.64 8.82 -92.71 -0.82 6.83 16 32 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.14 0.21 8.07 -2.39 -0.02 0.19 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.21 0.64 8.06 -2.90 -0.02 0.62 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.13 5.49 5.71 -2.91 -0.02 5.48 16 Total: -1.00 -86.28 357.30 4.80 -81.48 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.25 Total: 27.08 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 6.10 Total: -27.78 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -3.31 Total: -90.85 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.26 Total: -33.57 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -86.28 4.80 -81.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050331825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.302 kcal (2) G-P(sol) polarization free energy of solvation -86.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds