Wall clock time and date at job start Tue Mar 31 2020 10:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47282 * 90.00425 * 3 2 1 5 5 H 1.48506 * 109.47050 * 209.99789 * 3 2 1 6 6 H 1.48497 * 109.47227 * 329.99752 * 3 2 1 7 7 C 1.38815 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 201.02555 * 7 2 1 9 9 N 1.36934 * 120.00015 * 21.03358 * 7 2 1 10 10 C 1.46501 * 120.00060 * 36.11847 * 9 7 2 11 11 N 1.46495 * 109.47271 * 90.00377 * 10 9 7 12 12 C 1.34770 * 124.18088 * 90.02188 * 11 10 9 13 13 O 1.21232 * 127.15716 * 359.93235 * 12 11 10 14 14 C 1.51584 * 105.68470 * 179.97438 * 12 11 10 15 15 N 1.47305 * 103.59504 * 0.02562 * 14 12 11 16 16 C 1.39936 * 126.69346 * 180.02562 * 15 14 12 17 17 C 1.38874 * 120.06738 * 359.72698 * 16 15 14 18 18 C 1.38110 * 119.92699 * 179.72047 * 17 16 15 19 19 C 1.38280 * 120.07322 * 0.55500 * 18 17 16 20 20 C 1.38277 * 120.13799 * 359.71916 * 19 18 17 21 21 C 1.38113 * 120.07286 * 0.02562 * 20 19 18 22 22 C 1.33801 * 124.17431 * 269.72614 * 11 10 9 23 23 O 1.21534 * 123.77259 * 0.03558 * 22 11 10 24 24 C 1.46494 * 119.99851 * 216.11977 * 9 7 2 25 25 C 1.53004 * 117.50070 * 12.84040 * 24 9 7 26 26 C 1.52995 * 117.50069 * 304.17928 * 24 9 7 27 27 H 0.96999 * 119.99840 * 358.35412 * 1 2 3 28 28 H 1.09002 * 109.46891 * 210.00386 * 10 9 7 29 29 H 1.09003 * 109.47258 * 329.99900 * 10 9 7 30 30 H 1.09000 * 110.59403 * 118.52821 * 14 12 11 31 31 H 1.08996 * 110.59840 * 241.32018 * 14 12 11 32 32 H 1.08006 * 120.03292 * 359.97438 * 17 16 15 33 33 H 1.08007 * 119.96040 * 180.27307 * 18 17 16 34 34 H 1.07994 * 119.92937 * 179.70321 * 19 18 17 35 35 H 1.08005 * 119.96716 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.03692 * 179.97438 * 21 20 19 37 37 H 1.09003 * 115.55265 * 158.50994 * 24 9 7 38 38 H 1.08997 * 117.49630 * 359.97438 * 25 24 9 39 39 H 1.09000 * 117.49652 * 145.02158 * 25 24 9 40 40 H 1.09003 * 117.50087 * 214.97992 * 26 24 9 41 41 H 1.09002 * 117.49889 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0363 -1.2332 0.3361 9 7 1.3940 -2.3487 -0.4246 10 6 0.4388 -2.2988 -1.5342 11 7 1.1487 -2.5030 -2.7993 12 6 1.3556 -3.7084 -3.3654 13 8 1.0036 -4.7875 -2.9395 14 6 2.1207 -3.4344 -4.6449 15 7 2.2707 -1.9690 -4.6516 16 6 2.9105 -1.1984 -5.6289 17 6 3.4904 -1.8136 -6.7306 18 6 4.1161 -1.0498 -7.6963 19 6 4.1756 0.3251 -7.5613 20 6 3.6041 0.9402 -6.4626 21 6 2.9723 0.1825 -5.4960 22 6 1.6670 -1.5153 -3.5383 23 8 1.6031 -0.3400 -3.2354 24 6 1.6899 -3.6253 0.2303 25 6 2.4499 -3.5792 1.5574 26 6 3.1535 -4.0669 0.2885 27 1 -0.4850 0.8397 0.0241 28 1 -0.3082 -3.0822 -1.4062 29 1 -0.0533 -1.3262 -1.5466 30 1 3.0966 -3.9193 -4.6195 31 1 1.5504 -3.7681 -5.5117 32 1 3.4486 -2.8879 -6.8342 33 1 4.5634 -1.5273 -8.5556 34 1 4.6696 0.9197 -8.3154 35 1 3.6525 2.0143 -6.3597 36 1 2.5266 0.6635 -4.6379 37 1 0.9344 -4.4018 0.1098 38 1 2.7301 -2.5989 1.9430 39 1 2.1946 -4.3254 2.3097 40 1 3.3610 -5.1339 0.2067 41 1 3.8964 -3.4078 -0.1608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050898407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:56 Heat of formation + Delta-G solvation = 37.373983 kcal Electronic energy + Delta-G solvation = -27071.548250 eV Core-core repulsion = 23340.020322 eV Total energy + Delta-G solvation = -3731.527927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.36225 -40.28264 -39.30188 -38.82985 -37.20436 -36.22678 -34.90633 -32.56947 -31.84366 -31.02102 -28.61177 -27.71042 -25.66675 -24.31201 -23.74668 -23.05415 -22.41906 -21.82314 -21.02152 -19.16582 -18.67577 -18.07279 -17.78994 -17.48875 -17.04278 -16.54853 -16.46942 -16.34732 -15.70421 -15.37854 -15.29238 -15.03362 -14.90433 -14.82817 -14.38529 -14.27096 -13.74955 -13.55228 -13.27280 -12.99257 -12.80334 -12.68506 -12.58750 -12.28941 -12.13467 -12.09233 -11.69593 -11.54536 -11.40202 -11.21172 -10.97909 -10.71350 -10.48670 -9.87418 -8.94562 -8.75830 -8.06384 -5.62679 0.28476 0.47856 0.82753 1.07465 1.34032 1.41064 1.46090 1.99537 2.15371 2.39863 2.94412 3.04532 3.11175 3.34226 3.39088 3.67282 4.07446 4.10944 4.17174 4.19550 4.26069 4.33611 4.37728 4.40795 4.45520 4.56028 4.60123 4.76420 4.84733 4.90673 4.98042 5.17176 5.22151 5.27623 5.45936 5.46430 5.56963 5.60071 5.61536 5.67530 6.11105 6.23783 6.37119 6.48218 6.94673 7.13975 7.61445 8.09832 8.95877 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.005820 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.341194 B = 4809.779801 C = 6236.121215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.273 4.273 8 H 0.050 0.950 9 N -0.545 5.545 10 C 0.354 3.646 11 N -0.579 5.579 12 C 0.516 3.484 13 O -0.498 6.498 14 C 0.067 3.933 15 N -0.571 5.571 16 C 0.173 3.827 17 C -0.153 4.153 18 C -0.084 4.084 19 C -0.146 4.146 20 C -0.100 4.100 21 C -0.189 4.189 22 C 0.688 3.312 23 O -0.550 6.550 24 C 0.095 3.905 25 C -0.179 4.179 26 C -0.201 4.201 27 H 0.257 0.743 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.901 -6.707 -16.098 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.219 1.219 7 C -0.402 4.402 8 H 0.067 0.933 9 N -0.262 5.262 10 C 0.147 3.853 11 N -0.328 5.328 12 C 0.305 3.695 13 O -0.371 6.371 14 C -0.057 4.057 15 N -0.299 5.299 16 C 0.080 3.920 17 C -0.174 4.174 18 C -0.102 4.102 19 C -0.165 4.165 20 C -0.118 4.118 21 C -0.210 4.210 22 C 0.391 3.609 23 O -0.423 6.423 24 C -0.012 4.012 25 C -0.218 4.218 26 C -0.241 4.241 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.170 0.830 31 H 0.180 0.820 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.169 0.831 35 H 0.150 0.850 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.460 -6.461 -15.562 18.046 hybrid contribution 0.149 1.353 0.703 1.532 sum 6.609 -5.108 -14.859 17.046 Atomic orbital electron populations 1.69873 1.06474 1.26562 1.51632 1.25459 0.95429 1.00610 0.97835 0.85573 0.78337 0.80996 0.77180 1.20254 1.21282 1.21901 1.18770 0.93942 0.85905 1.41591 0.93270 1.43919 1.48604 1.03066 1.30593 1.21367 0.87461 1.03372 0.73131 1.48663 1.52228 1.08061 1.23894 1.21343 0.78251 0.83515 0.86390 1.90729 1.51786 1.25648 1.68970 1.22851 1.05038 0.79471 0.98334 1.45152 1.55274 1.08296 1.21194 1.17754 0.95618 0.89853 0.88795 1.21059 1.01555 1.01742 0.93012 1.21379 0.96804 0.93506 0.98534 1.21475 1.01028 0.95764 0.98205 1.21218 0.96537 1.00342 0.93718 1.21472 1.04287 0.93224 1.02008 1.16374 0.78706 0.85369 0.80458 1.90862 1.61749 1.16426 1.73309 1.21464 0.93006 0.89287 0.97488 1.23071 1.05330 1.01983 0.91398 1.23236 0.97726 1.00416 1.02771 0.93341 0.90686 0.87590 0.83038 0.81961 0.82443 0.81709 0.83076 0.85046 0.86970 0.87811 0.90572 0.87336 0.87687 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.52 11.34 21.65 0.25 -52.27 16 2 C 0.01 0.37 4.98 84.86 0.42 0.79 16 3 Si 0.95 48.36 29.60 68.60 2.03 50.39 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 7 C -0.27 -15.07 8.14 84.03 0.68 -14.39 16 8 H 0.05 2.81 7.19 -2.91 -0.02 2.79 16 9 N -0.55 -27.18 3.03 -689.70 -2.09 -29.27 16 10 C 0.35 16.93 5.89 170.96 1.01 17.94 16 11 N -0.58 -24.00 2.84 -784.19 -2.23 -26.23 16 12 C 0.52 17.35 8.32 87.94 0.73 18.08 16 13 O -0.50 -18.22 17.76 -2.88 -0.05 -18.28 16 14 C 0.07 1.53 6.54 85.76 0.56 2.09 16 15 N -0.57 -18.07 3.21 -650.00 -2.09 -20.15 16 16 C 0.17 5.01 6.66 38.15 0.25 5.27 16 17 C -0.15 -2.94 9.52 22.39 0.21 -2.73 16 18 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 19 C -0.15 -2.66 10.04 22.29 0.22 -2.44 16 20 C -0.10 -2.52 10.04 22.25 0.22 -2.30 16 21 C -0.19 -6.29 9.36 22.39 0.21 -6.08 16 22 C 0.69 29.20 8.23 179.43 1.48 30.68 16 23 O -0.55 -28.12 14.44 -3.82 -0.06 -28.17 16 24 C 0.09 4.07 6.61 44.99 0.30 4.36 16 25 C -0.18 -6.99 9.80 30.62 0.30 -6.69 16 26 C -0.20 -7.63 10.12 30.62 0.31 -7.32 16 27 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.08 3.40 7.90 -2.39 -0.02 3.38 16 29 H 0.11 5.87 5.10 -2.39 -0.01 5.86 16 30 H 0.15 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.16 1.91 7.38 -2.91 -0.02 1.89 16 33 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.11 4.73 5.41 -2.91 -0.02 4.71 16 37 H 0.10 4.20 8.10 -2.39 -0.02 4.18 16 38 H 0.08 3.36 6.87 -2.39 -0.02 3.35 16 39 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.06 2.62 8.11 -2.39 -0.02 2.60 16 Total: -1.00 -72.71 348.95 3.96 -68.76 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.06 Total: 19.04 kcal Atomic # 6 Polarization: 29.05 SS G_CDS: 7.14 Total: 36.18 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -6.16 Total: -127.92 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.11 Total: -46.45 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -72.71 3.96 -68.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.133 kcal (2) G-P(sol) polarization free energy of solvation -72.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds