Wall clock time and date at job start Tue Mar 31 2020 11:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38141 * 119.97569 * 2 1 4 4 C 1.38856 * 119.95154 * 180.02562 * 3 2 1 5 5 N 1.39824 * 120.04798 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00092 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46739 * 325.00568 * 6 5 4 8 8 C 1.53006 * 109.46912 * 84.99709 * 6 5 4 9 9 C 1.50697 * 109.47289 * 204.99769 * 6 5 4 10 10 C 1.38297 * 119.92985 * 319.73172 * 9 6 5 11 11 C 1.38106 * 120.06772 * 179.72522 * 10 9 6 12 12 C 1.38882 * 119.92500 * 0.54468 * 11 10 9 13 13 O 1.35757 * 120.06504 * 179.74920 * 12 11 10 14 14 C 1.34828 * 116.99777 * 174.43555 * 13 12 11 15 15 H 1.08006 * 120.00023 * 5.05987 * 14 13 12 16 16 C 1.38646 * 119.99973 * 185.05405 * 14 13 12 17 17 N 1.31562 * 120.00172 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00200 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47066 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47343 * 120.00086 * 18 16 14 21 21 H 1.48500 * 109.47049 * 240.00344 * 18 16 14 22 22 C 1.38875 * 119.86440 * 359.72584 * 12 11 10 23 23 C 1.38095 * 119.93116 * 0.02562 * 22 12 11 24 24 C 1.38892 * 119.90385 * 0.02562 * 4 3 2 25 25 C 1.38102 * 119.95083 * 359.97438 * 24 4 3 26 26 C 1.38439 * 119.97767 * 180.02562 * 2 1 3 27 27 F 1.35096 * 119.95220 * 0.27454 * 26 2 1 28 28 H 1.09002 * 109.47136 * 269.99049 * 1 2 3 29 29 H 1.09000 * 109.47702 * 29.99774 * 1 2 3 30 30 H 1.09004 * 109.47526 * 150.00019 * 1 2 3 31 31 H 1.07996 * 120.02591 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00050 * 359.97356 * 5 4 3 33 33 H 1.08996 * 109.46761 * 180.02562 * 8 6 5 34 34 H 1.08998 * 109.47097 * 300.00698 * 8 6 5 35 35 H 1.09004 * 109.46471 * 60.00394 * 8 6 5 36 36 H 1.08001 * 119.97031 * 359.97438 * 10 9 6 37 37 H 1.07997 * 120.03707 * 180.27151 * 11 10 9 38 38 H 0.96996 * 120.00173 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.03474 * 179.97438 * 22 12 11 40 40 H 1.08007 * 119.96473 * 180.02562 * 23 22 12 41 41 H 1.08004 * 120.02903 * 180.02562 * 24 4 3 42 42 H 1.07998 * 119.97553 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1966 0.0000 4 6 3.5857 1.1960 -0.0005 5 7 4.2863 2.4061 0.0000 6 6 5.7514 2.4042 0.0000 7 1 6.1136 1.5616 0.5890 8 6 6.2612 2.2785 -1.4371 9 6 6.2553 3.6910 0.6010 10 6 5.6246 4.8852 0.3031 11 6 6.0806 6.0655 0.8568 12 6 7.1806 6.0535 1.7044 13 8 7.6344 7.2127 2.2462 14 6 8.6313 7.1174 3.1489 15 1 9.0877 6.1594 3.3504 16 6 9.0707 8.2491 3.8185 17 7 8.5146 9.4160 3.5734 18 14 10.4525 8.1173 5.0687 19 1 10.9037 6.7055 5.1607 20 1 11.5884 8.9738 4.6433 21 1 9.9632 8.5675 6.3965 22 6 7.8152 4.8534 1.9971 23 6 7.3513 3.6760 1.4444 24 6 4.2776 -0.0083 -0.0016 25 6 3.5835 -1.2022 -0.0016 26 6 2.1986 -1.1992 -0.0005 27 9 1.5217 -2.3683 -0.0067 28 1 -0.3633 -0.0002 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6571 2.1319 0.0004 32 1 3.8024 3.2467 0.0004 33 1 7.3511 2.2766 -1.4371 34 1 5.8966 1.3478 -1.8718 35 1 5.8988 3.1211 -2.0261 36 1 4.7722 4.8944 -0.3599 37 1 5.5850 6.9972 0.6273 38 1 8.8223 10.2078 4.0416 39 1 8.6711 4.8410 2.6556 40 1 7.8441 2.7423 1.6719 41 1 5.3576 -0.0111 -0.0016 42 1 4.1212 -2.1389 -0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061117228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:08 Heat of formation + Delta-G solvation = -28.269903 kcal Electronic energy + Delta-G solvation = -24554.831810 eV Core-core repulsion = 20800.537389 eV Total energy + Delta-G solvation = -3754.294422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.75525 -39.84367 -39.07246 -37.37889 -35.44582 -32.77961 -32.39904 -31.65009 -30.34368 -28.25866 -28.02595 -26.96904 -25.50192 -23.16049 -22.89534 -22.12917 -21.09794 -19.97270 -18.09359 -17.65449 -17.41120 -16.92824 -16.39984 -15.62532 -15.22124 -14.95863 -14.57033 -14.31584 -14.03239 -13.96721 -13.67779 -13.61913 -13.42435 -13.37797 -13.13359 -12.89228 -12.76774 -12.64176 -12.38414 -12.24303 -11.93441 -11.75597 -11.53160 -11.30569 -10.96173 -10.87870 -10.79439 -10.53627 -10.49089 -9.89367 -9.43721 -8.98048 -8.91740 -8.32618 -7.37693 -7.31046 -6.53730 -4.12788 1.14966 1.33671 2.07654 2.13075 3.06612 3.08689 3.14184 3.41680 3.59306 3.89377 4.35884 4.42731 4.57061 4.68211 4.90801 4.99731 5.04903 5.14649 5.16637 5.26350 5.29831 5.39356 5.41733 5.55290 5.60106 5.62597 5.67843 5.80765 5.86346 5.90590 6.07603 6.12921 6.15920 6.20796 6.25065 6.31200 6.54349 6.70871 6.78011 6.93627 7.05456 7.20063 7.32386 7.36155 7.66733 7.70898 7.90840 8.91809 9.60073 10.63998 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.002255 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.687038 B =12411.823964 C =12520.652697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 C -0.178 4.178 4 C 0.224 3.776 5 N -0.732 5.732 6 C 0.204 3.796 7 H 0.078 0.922 8 C -0.161 4.161 9 C -0.195 4.195 10 C -0.066 4.066 11 C -0.190 4.190 12 C 0.156 3.844 13 O -0.175 6.175 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.860 5.860 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.231 4.231 23 C -0.059 4.059 24 C -0.181 4.181 25 C -0.098 4.098 26 C 0.021 3.979 27 F -0.150 7.150 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.401 0.599 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.131 0.869 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 -16.931 -7.522 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.070 4.070 3 C -0.201 4.201 4 C 0.118 3.882 5 N -0.360 5.360 6 C 0.100 3.900 7 H 0.096 0.904 8 C -0.220 4.220 9 C -0.197 4.197 10 C -0.085 4.085 11 C -0.209 4.209 12 C 0.102 3.898 13 O -0.078 6.078 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.250 4.250 23 C -0.078 4.078 24 C -0.204 4.204 25 C -0.117 4.117 26 C 0.000 4.000 27 F -0.129 7.129 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.237 0.763 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.149 0.851 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.269 -16.476 -7.469 20.326 hybrid contribution 0.530 0.115 0.671 0.863 sum -8.738 -16.361 -6.797 19.754 Atomic orbital electron populations 1.20729 0.90568 1.03078 1.02729 1.19600 0.96401 0.91493 0.99496 1.20310 0.91915 0.97531 1.10302 1.17881 0.90891 0.86847 0.92555 1.45126 1.05519 1.04932 1.80446 1.19560 0.78943 0.96054 0.95469 0.90438 1.22274 1.01448 1.01735 0.96527 1.19189 1.01212 0.93495 1.05759 1.20302 0.98369 0.91555 0.98271 1.20184 0.98815 0.98312 1.03626 1.19406 0.91793 0.86601 0.92048 1.83981 1.48004 1.25358 1.50455 1.21388 1.11592 0.96455 1.17454 0.88923 1.25315 0.98866 0.94305 0.98023 1.70044 1.40242 0.98831 1.40352 0.85632 0.79464 0.78869 0.79390 1.19054 1.20071 1.20067 1.21148 1.04475 0.92301 1.07086 1.20534 0.95067 0.97095 0.95056 1.20529 1.00043 0.90245 1.09575 1.20844 0.92072 0.98931 0.99879 1.17227 0.89869 0.80802 1.12101 1.91417 1.80346 1.46232 1.94860 0.90823 0.91085 0.91290 0.85428 0.76304 0.91638 0.92740 0.92259 0.87403 0.86442 0.91950 0.85378 0.87374 0.85107 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.83 36.00 0.35 -0.61 16 2 C -0.07 -0.73 5.88 -104.59 -0.62 -1.35 16 3 C -0.18 -1.89 9.55 -39.39 -0.38 -2.26 16 4 C 0.22 2.53 6.64 -83.74 -0.56 1.97 16 5 N -0.73 -8.31 5.20 -53.26 -0.28 -8.59 16 6 C 0.20 2.46 2.47 -69.08 -0.17 2.29 16 7 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 8 C -0.16 -1.76 9.41 37.16 0.35 -1.41 16 9 C -0.20 -2.98 4.96 -104.58 -0.52 -3.50 16 10 C -0.07 -1.07 9.04 -39.61 -0.36 -1.43 16 11 C -0.19 -3.76 9.99 -39.39 -0.39 -4.16 16 12 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 13 O -0.18 -4.84 9.76 0.03 0.00 -4.84 16 14 C -0.39 -10.66 9.49 30.88 0.29 -10.37 16 15 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 18 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.23 -4.73 9.17 -39.40 -0.36 -5.09 16 23 C -0.06 -0.99 9.66 -39.61 -0.38 -1.37 16 24 C -0.18 -1.96 8.85 -39.39 -0.35 -2.30 16 25 C -0.10 -1.04 10.02 -39.54 -0.40 -1.44 16 26 C 0.02 0.24 7.24 -39.41 -0.29 -0.04 16 27 F -0.15 -1.80 16.46 2.25 0.04 -1.77 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.07 0.57 7.63 -51.93 -0.40 0.17 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.40 4.36 6.89 -40.82 -0.28 4.08 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.54 7.71 -51.93 -0.40 0.14 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.42 6.93 -52.49 -0.36 1.05 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 40 H 0.11 1.53 8.03 -52.48 -0.42 1.11 16 41 H 0.13 1.27 6.12 -52.48 -0.32 0.95 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -29.51 355.79 -8.44 -37.95 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.17 Total: 7.60 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -4.12 Total: -26.77 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.48 Total: -32.52 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.00 Total: -4.84 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.51 -8.44 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061117228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.677 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds