Wall clock time and date at job start Tue Mar 31 2020 11:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38141 * 119.97569 * 2 1 4 4 C 1.38856 * 119.95154 * 180.02562 * 3 2 1 5 5 N 1.39824 * 120.04798 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00092 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46739 * 325.00568 * 6 5 4 8 8 C 1.53006 * 109.46912 * 84.99709 * 6 5 4 9 9 C 1.50697 * 109.47289 * 204.99769 * 6 5 4 10 10 C 1.38297 * 119.92985 * 319.73172 * 9 6 5 11 11 C 1.38106 * 120.06772 * 179.72522 * 10 9 6 12 12 C 1.38882 * 119.92500 * 0.54468 * 11 10 9 13 13 O 1.35757 * 120.06504 * 179.74920 * 12 11 10 14 14 C 1.34828 * 116.99777 * 174.43555 * 13 12 11 15 15 H 1.08006 * 120.00023 * 5.05987 * 14 13 12 16 16 C 1.38646 * 119.99973 * 185.05405 * 14 13 12 17 17 N 1.31562 * 120.00172 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00200 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47066 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47343 * 120.00086 * 18 16 14 21 21 H 1.48500 * 109.47049 * 240.00344 * 18 16 14 22 22 C 1.38875 * 119.86440 * 359.72584 * 12 11 10 23 23 C 1.38095 * 119.93116 * 0.02562 * 22 12 11 24 24 C 1.38892 * 119.90385 * 0.02562 * 4 3 2 25 25 C 1.38102 * 119.95083 * 359.97438 * 24 4 3 26 26 C 1.38439 * 119.97767 * 180.02562 * 2 1 3 27 27 F 1.35096 * 119.95220 * 0.27454 * 26 2 1 28 28 H 1.09002 * 109.47136 * 269.99049 * 1 2 3 29 29 H 1.09000 * 109.47702 * 29.99774 * 1 2 3 30 30 H 1.09004 * 109.47526 * 150.00019 * 1 2 3 31 31 H 1.07996 * 120.02591 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00050 * 359.97356 * 5 4 3 33 33 H 1.08996 * 109.46761 * 180.02562 * 8 6 5 34 34 H 1.08998 * 109.47097 * 300.00698 * 8 6 5 35 35 H 1.09004 * 109.46471 * 60.00394 * 8 6 5 36 36 H 1.08001 * 119.97031 * 359.97438 * 10 9 6 37 37 H 1.07997 * 120.03707 * 180.27151 * 11 10 9 38 38 H 0.96996 * 120.00173 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.03474 * 179.97438 * 22 12 11 40 40 H 1.08007 * 119.96473 * 180.02562 * 23 22 12 41 41 H 1.08004 * 120.02903 * 180.02562 * 24 4 3 42 42 H 1.07998 * 119.97553 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1966 0.0000 4 6 3.5857 1.1960 -0.0005 5 7 4.2863 2.4061 0.0000 6 6 5.7514 2.4042 0.0000 7 1 6.1136 1.5616 0.5890 8 6 6.2612 2.2785 -1.4371 9 6 6.2553 3.6910 0.6010 10 6 5.6246 4.8852 0.3031 11 6 6.0806 6.0655 0.8568 12 6 7.1806 6.0535 1.7044 13 8 7.6344 7.2127 2.2462 14 6 8.6313 7.1174 3.1489 15 1 9.0877 6.1594 3.3504 16 6 9.0707 8.2491 3.8185 17 7 8.5146 9.4160 3.5734 18 14 10.4525 8.1173 5.0687 19 1 10.9037 6.7055 5.1607 20 1 11.5884 8.9738 4.6433 21 1 9.9632 8.5675 6.3965 22 6 7.8152 4.8534 1.9971 23 6 7.3513 3.6760 1.4444 24 6 4.2776 -0.0083 -0.0016 25 6 3.5835 -1.2022 -0.0016 26 6 2.1986 -1.1992 -0.0005 27 9 1.5217 -2.3683 -0.0067 28 1 -0.3633 -0.0002 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6571 2.1319 0.0004 32 1 3.8024 3.2467 0.0004 33 1 7.3511 2.2766 -1.4371 34 1 5.8966 1.3478 -1.8718 35 1 5.8988 3.1211 -2.0261 36 1 4.7722 4.8944 -0.3599 37 1 5.5850 6.9972 0.6273 38 1 8.8223 10.2078 4.0416 39 1 8.6711 4.8410 2.6556 40 1 7.8441 2.7423 1.6719 41 1 5.3576 -0.0111 -0.0016 42 1 4.1212 -2.1389 -0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061117228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:08 Heat of formation + Delta-G solvation = -43.486994 kcal Electronic energy + Delta-G solvation = -24555.491673 eV Core-core repulsion = 20800.537389 eV Total energy + Delta-G solvation = -3754.954284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.63260 -41.04349 -40.32790 -38.78991 -36.63864 -34.32617 -33.50121 -32.73165 -31.82947 -29.59510 -28.89893 -27.74116 -27.37260 -24.32560 -23.89499 -23.44090 -22.26723 -21.12001 -19.78723 -18.95800 -18.45160 -18.10923 -17.37363 -16.53838 -16.46334 -16.27876 -16.10807 -15.55392 -15.54589 -15.27425 -14.83702 -14.75973 -14.42580 -14.27535 -14.20779 -13.96063 -13.87587 -13.60317 -13.58630 -13.47762 -13.02174 -12.97934 -12.79283 -12.55498 -12.37614 -12.24724 -12.10970 -11.83351 -11.66521 -11.19330 -10.84972 -10.73040 -9.81011 -9.75787 -8.95012 -8.48504 -8.23865 -6.16529 0.36237 0.49000 0.56759 0.63960 1.35067 1.42762 1.52994 2.16571 2.47028 2.77659 2.82973 3.15226 3.48682 3.55595 3.77883 3.84703 3.93914 4.05224 4.15192 4.27402 4.38334 4.44137 4.46690 4.52057 4.55907 4.72081 4.77194 4.83194 4.91224 4.93458 5.03131 5.04758 5.14997 5.19355 5.25678 5.32307 5.35039 5.40276 5.47022 5.53124 5.69802 5.70591 5.93986 6.01745 6.17199 6.43229 6.82413 6.96621 7.77046 8.74811 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.002255 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.687038 B =12411.823964 C =12520.652697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.182 4.182 4 C 0.215 3.785 5 N -0.733 5.733 6 C 0.209 3.791 7 H 0.092 0.908 8 C -0.158 4.158 9 C -0.165 4.165 10 C -0.057 4.057 11 C -0.202 4.202 12 C 0.114 3.886 13 O -0.232 6.232 14 C -0.412 4.412 15 H 0.103 0.897 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.250 1.250 20 H -0.269 1.269 21 H -0.270 1.270 22 C -0.240 4.240 23 C -0.058 4.058 24 C -0.185 4.185 25 C -0.100 4.100 26 C 0.001 3.999 27 F -0.157 7.157 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.272 0.728 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.799 -19.989 -8.258 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.204 4.204 4 C 0.111 3.889 5 N -0.362 5.362 6 C 0.105 3.895 7 H 0.110 0.890 8 C -0.216 4.216 9 C -0.166 4.166 10 C -0.075 4.075 11 C -0.221 4.221 12 C 0.063 3.937 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.120 0.880 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.837 3.163 19 H -0.174 1.174 20 H -0.194 1.194 21 H -0.195 1.195 22 C -0.259 4.259 23 C -0.076 4.076 24 C -0.208 4.208 25 C -0.120 4.120 26 C -0.020 4.020 27 F -0.136 7.136 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.240 0.760 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.662 -19.601 -8.239 23.355 hybrid contribution 0.404 0.736 0.673 1.076 sum -9.259 -18.864 -7.566 22.335 Atomic orbital electron populations 1.20781 0.89249 1.03774 1.03310 1.19877 0.97586 0.91305 0.98939 1.20500 0.91942 0.98080 1.09900 1.17993 0.91195 0.86834 0.92928 1.44992 1.05023 1.05219 1.80976 1.19552 0.79535 0.94172 0.96284 0.88982 1.22236 1.01678 1.02393 0.95317 1.19677 0.99221 0.94854 1.02879 1.20680 0.98899 0.90345 0.97558 1.20439 0.98268 0.99845 1.03556 1.19982 0.93549 0.86693 0.93448 1.83946 1.49637 1.27789 1.52515 1.21852 1.11938 0.97168 1.17805 0.87997 1.26582 1.01700 0.93683 1.00144 1.70186 1.43046 0.99840 1.42813 0.84535 0.75827 0.79615 0.76285 1.17374 1.19377 1.19474 1.21249 1.04338 0.92853 1.07475 1.20918 0.95344 0.97067 0.94281 1.20703 1.00733 0.90022 1.09329 1.21064 0.91867 0.99795 0.99234 1.17533 0.90525 0.80926 1.13013 1.91397 1.80546 1.46632 1.94998 0.90235 0.89629 0.91400 0.84059 0.76023 0.91284 0.91298 0.92647 0.83738 0.86927 0.91853 0.86320 0.83784 0.83810 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.83 71.23 0.70 -0.98 16 2 C -0.08 -1.45 5.88 -19.84 -0.12 -1.56 16 3 C -0.18 -3.33 9.55 22.39 0.21 -3.11 16 4 C 0.22 4.11 6.64 38.17 0.25 4.36 16 5 N -0.73 -13.69 5.20 -322.43 -1.68 -15.37 16 6 C 0.21 4.11 2.47 44.25 0.11 4.22 16 7 H 0.09 1.64 6.34 -2.39 -0.02 1.63 16 8 C -0.16 -2.75 9.41 71.98 0.68 -2.08 16 9 C -0.17 -4.47 4.96 -19.84 -0.10 -4.57 16 10 C -0.06 -1.68 9.04 22.25 0.20 -1.48 16 11 C -0.20 -8.06 9.99 22.39 0.22 -7.84 16 12 C 0.11 5.43 6.65 22.58 0.15 5.58 16 13 O -0.23 -13.68 9.76 -22.79 -0.22 -13.90 16 14 C -0.41 -23.50 9.49 67.92 0.64 -22.85 16 15 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 16 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 17 N -0.92 -55.92 13.67 21.61 0.30 -55.62 16 18 Si 1.02 42.19 29.55 68.60 2.03 44.21 16 19 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 C -0.24 -9.85 9.17 22.39 0.21 -9.64 16 23 C -0.06 -1.79 9.66 22.25 0.21 -1.58 16 24 C -0.19 -3.34 8.85 22.39 0.20 -3.15 16 25 C -0.10 -1.86 10.02 22.30 0.22 -1.64 16 26 C 0.00 0.02 7.24 22.38 0.16 0.18 16 27 F -0.16 -3.55 16.46 44.97 0.74 -2.81 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 0.98 8.08 -2.39 -0.02 0.97 16 30 H 0.07 1.00 7.63 -2.38 -0.02 0.99 16 31 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.40 7.17 6.89 -92.71 -0.64 6.53 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.06 7.71 -2.39 -0.02 1.04 16 35 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.15 3.25 6.93 -2.91 -0.02 3.23 16 37 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 38 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 40 H 0.14 3.45 8.03 -2.91 -0.02 3.43 16 41 H 0.14 2.15 6.12 -2.91 -0.02 2.14 16 42 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -68.88 355.79 6.01 -62.87 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.42 Total: 27.61 kcal Atomic # 6 Polarization: -51.43 SS G_CDS: 4.43 Total: -47.00 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -1.38 Total: -70.99 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.22 Total: -13.90 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.74 Total: -2.81 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -68.88 6.01 -62.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061117228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.387 kcal (2) G-P(sol) polarization free energy of solvation -68.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds