Wall clock time and date at job start Tue Mar 31 2020 11:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38149 * 119.97124 * 2 1 4 4 C 1.38862 * 119.94631 * 180.02562 * 3 2 1 5 5 N 1.39823 * 120.04629 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99722 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47549 * 35.00452 * 6 5 4 8 8 C 1.52998 * 109.47501 * 274.99882 * 6 5 4 9 9 C 1.50703 * 109.46796 * 155.00111 * 6 5 4 10 10 C 1.38296 * 119.93213 * 39.72698 * 9 6 5 11 11 C 1.38103 * 120.06878 * 179.72361 * 10 9 6 12 12 C 1.38881 * 119.92818 * 0.55277 * 11 10 9 13 13 O 1.35751 * 120.06716 * 179.74530 * 12 11 10 14 14 C 1.34834 * 117.00079 * 174.43720 * 13 12 11 15 15 H 1.07992 * 119.99622 * 5.05966 * 14 13 12 16 16 C 1.38653 * 120.00068 * 185.05638 * 14 13 12 17 17 N 1.31559 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 119.99923 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47299 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47226 * 120.00161 * 18 16 14 21 21 H 1.48503 * 109.47500 * 240.00110 * 18 16 14 22 22 C 1.38872 * 119.86255 * 359.71990 * 12 11 10 23 23 C 1.38100 * 119.93320 * 0.02562 * 22 12 11 24 24 C 1.38898 * 119.90332 * 0.02562 * 4 3 2 25 25 C 1.38102 * 119.94720 * 359.76405 * 24 4 3 26 26 C 1.38441 * 119.97720 * 180.02562 * 2 1 3 27 27 F 1.35093 * 119.95160 * 359.97438 * 26 2 1 28 28 H 1.08994 * 109.47126 * 269.97277 * 1 2 3 29 29 H 1.08996 * 109.47475 * 29.97608 * 1 2 3 30 30 H 1.09005 * 109.46901 * 149.97169 * 1 2 3 31 31 H 1.07999 * 120.02769 * 359.97438 * 3 2 1 32 32 H 0.97003 * 120.00037 * 0.02562 * 5 4 3 33 33 H 1.08998 * 109.47166 * 59.99908 * 8 6 5 34 34 H 1.08999 * 109.47537 * 180.02562 * 8 6 5 35 35 H 1.09006 * 109.47142 * 300.00318 * 8 6 5 36 36 H 1.07998 * 119.96573 * 359.97438 * 10 9 6 37 37 H 1.08001 * 120.03575 * 180.27353 * 11 10 9 38 38 H 0.96998 * 120.00176 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.03137 * 179.97438 * 22 12 11 40 40 H 1.07997 * 119.96658 * 180.02562 * 23 22 12 41 41 H 1.07995 * 120.02345 * 179.97438 * 24 4 3 42 42 H 1.08003 * 119.96805 * 180.23073 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1968 0.0000 4 6 3.5857 1.1962 -0.0005 5 7 4.2864 2.4062 0.0000 6 6 5.7513 2.4043 0.0000 7 1 6.1136 1.5623 -0.5899 8 6 6.2612 2.2773 1.4369 9 6 6.2552 3.6917 -0.5999 10 6 5.6177 4.8841 -0.3099 11 6 6.0806 6.0663 -0.8535 12 6 7.1805 6.0552 -1.7014 13 8 7.6347 7.2149 -2.2414 14 6 8.7727 7.1504 -2.9616 15 1 9.2353 6.1940 -3.1558 16 6 9.3491 8.3118 -3.4529 17 7 8.7858 9.4768 -3.2159 18 14 10.9253 8.2223 -4.4512 19 1 11.3528 6.8056 -4.5755 20 1 10.6874 8.7875 -5.8037 21 1 11.9886 9.0026 -3.7686 22 6 7.8150 4.8554 -1.9951 23 6 7.3506 3.6773 -1.4441 24 6 4.2777 -0.0082 -0.0016 25 6 3.5835 -1.2021 0.0028 26 6 2.1987 -1.1992 -0.0005 27 9 1.5218 -2.3683 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6571 2.1320 -0.0004 32 1 3.8024 3.2469 0.0011 33 1 5.8967 1.3462 1.8708 34 1 7.3512 2.2764 1.4370 35 1 5.8990 3.1193 2.0268 36 1 4.7594 4.8915 0.3456 37 1 5.5850 6.9978 -0.6232 38 1 9.1888 10.2893 -3.5598 39 1 8.6704 4.8435 -2.6544 40 1 7.8439 2.7439 -1.6719 41 1 5.3576 -0.0109 -0.0025 42 1 4.1212 -2.1388 0.0057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061117232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:11 Heat of formation + Delta-G solvation = -28.177562 kcal Electronic energy + Delta-G solvation = -24547.766500 eV Core-core repulsion = 20793.476083 eV Total energy + Delta-G solvation = -3754.290417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.75794 -39.84553 -39.07277 -37.37978 -35.44637 -32.78077 -32.39980 -31.65060 -30.34393 -28.25915 -28.02847 -26.97134 -25.50210 -23.16004 -22.89750 -22.13006 -21.09857 -19.97293 -18.09491 -17.65634 -17.41426 -16.92822 -16.40089 -15.62148 -15.23086 -14.96078 -14.56857 -14.31725 -14.05130 -13.95601 -13.70586 -13.58310 -13.44015 -13.33795 -13.14902 -12.89372 -12.79889 -12.64821 -12.35372 -12.25780 -11.92053 -11.75818 -11.53585 -11.30824 -10.96314 -10.88210 -10.79120 -10.53507 -10.49068 -9.89165 -9.43984 -8.98284 -8.91859 -8.32619 -7.37918 -7.31004 -6.53766 -4.12796 1.14704 1.33444 2.07649 2.13147 3.06646 3.08549 3.14139 3.41344 3.59041 3.89394 4.35683 4.42721 4.56836 4.68030 4.90156 5.00968 5.04733 5.14782 5.16030 5.26143 5.29817 5.38663 5.41645 5.55327 5.59920 5.62619 5.67918 5.80899 5.86432 5.90446 6.07580 6.12792 6.16008 6.20841 6.24895 6.31242 6.54319 6.70740 6.77929 6.93657 7.05347 7.20051 7.32377 7.36076 7.66603 7.70720 7.90837 8.91759 9.60078 10.63972 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029220 B = 0.002238 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.009390 B =12508.843861 C =12733.890603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 C -0.178 4.178 4 C 0.224 3.776 5 N -0.732 5.732 6 C 0.204 3.796 7 H 0.078 0.922 8 C -0.161 4.161 9 C -0.195 4.195 10 C -0.066 4.066 11 C -0.190 4.190 12 C 0.156 3.844 13 O -0.175 6.175 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.860 5.860 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.231 4.231 23 C -0.059 4.059 24 C -0.181 4.181 25 C -0.098 4.098 26 C 0.021 3.979 27 F -0.150 7.150 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.401 0.599 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.131 0.869 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 -17.013 7.093 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.070 4.070 3 C -0.201 4.201 4 C 0.118 3.882 5 N -0.360 5.360 6 C 0.100 3.900 7 H 0.096 0.904 8 C -0.220 4.220 9 C -0.196 4.196 10 C -0.085 4.085 11 C -0.209 4.209 12 C 0.102 3.898 13 O -0.078 6.078 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.767 3.233 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.250 4.250 23 C -0.078 4.078 24 C -0.204 4.204 25 C -0.117 4.117 26 C 0.000 4.000 27 F -0.129 7.129 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.237 0.763 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.149 0.851 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.620 -16.557 7.031 20.400 hybrid contribution 0.624 0.135 -0.535 0.833 sum -8.996 -16.422 6.496 19.820 Atomic orbital electron populations 1.20729 0.90567 1.03163 1.02644 1.19605 0.96400 0.91492 0.99503 1.20313 0.91911 0.97527 1.10305 1.17885 0.90891 0.86848 0.92557 1.45129 1.05522 1.04931 1.80451 1.19557 0.78934 0.96044 0.95490 0.90439 1.22272 1.01463 1.01726 0.96522 1.19192 1.01082 0.93539 1.05836 1.20299 0.98217 0.91532 0.98452 1.20182 0.99663 0.98249 1.02836 1.19403 0.92673 0.86819 0.90951 1.83980 1.38857 1.26569 1.58395 1.21389 0.99846 0.95061 1.30595 0.88921 1.25316 0.99318 0.94136 0.97749 1.70044 1.38927 0.97831 1.42661 0.85631 0.79879 0.78884 0.78949 1.19054 1.20077 1.20065 1.21150 1.04661 0.92198 1.07001 1.20534 0.95059 0.97082 0.95080 1.20530 1.00047 0.90243 1.09563 1.20843 0.92074 0.98934 0.99880 1.17225 0.89869 0.80803 1.12094 1.91416 1.80343 1.46232 1.94860 0.90882 0.91051 0.91269 0.85429 0.76303 0.92745 0.91626 0.92259 0.87412 0.86443 0.91950 0.85380 0.87373 0.85103 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.83 36.00 0.35 -0.60 16 2 C -0.07 -0.73 5.88 -104.58 -0.62 -1.35 16 3 C -0.18 -1.88 9.55 -39.38 -0.38 -2.26 16 4 C 0.22 2.52 6.64 -83.74 -0.56 1.96 16 5 N -0.73 -8.29 5.20 -53.27 -0.28 -8.56 16 6 C 0.20 2.46 2.47 -69.08 -0.17 2.29 16 7 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 8 C -0.16 -1.77 9.41 37.16 0.35 -1.42 16 9 C -0.20 -2.98 4.96 -104.58 -0.52 -3.50 16 10 C -0.07 -1.07 9.05 -39.61 -0.36 -1.43 16 11 C -0.19 -3.76 9.99 -39.39 -0.39 -4.16 16 12 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 13 O -0.18 -4.84 9.76 0.03 0.00 -4.84 16 14 C -0.39 -10.66 9.49 30.89 0.29 -10.36 16 15 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 17 N -0.86 -24.68 13.67 55.48 0.76 -23.92 16 18 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.23 -4.73 9.17 -39.40 -0.36 -5.09 16 23 C -0.06 -0.99 9.66 -39.61 -0.38 -1.37 16 24 C -0.18 -1.95 8.85 -39.39 -0.35 -2.30 16 25 C -0.10 -1.04 10.02 -39.54 -0.40 -1.43 16 26 C 0.02 0.24 7.24 -39.42 -0.29 -0.04 16 27 F -0.15 -1.80 16.47 2.25 0.04 -1.76 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.07 0.58 7.63 -51.93 -0.40 0.18 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.40 4.34 6.86 -40.82 -0.28 4.06 16 33 H 0.05 0.54 7.72 -51.93 -0.40 0.14 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.41 6.89 -52.49 -0.36 1.05 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 40 H 0.11 1.53 8.03 -52.49 -0.42 1.11 16 41 H 0.13 1.27 6.12 -52.49 -0.32 0.95 16 42 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -29.50 355.76 -8.44 -37.94 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.17 Total: 7.58 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -4.12 Total: -26.77 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.48 Total: -32.48 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.00 Total: -4.84 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.50 -8.44 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061117232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.760 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds