Wall clock time and date at job start Tue Mar 31 2020 11:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37710 * 120.15809 * 2 1 4 4 C 1.38841 * 120.81400 * 179.97438 * 3 2 1 5 5 C 1.37803 * 120.57400 * 359.95445 * 4 3 2 6 6 C 1.39293 * 119.51576 * 0.02562 * 5 4 3 7 7 C 1.39606 * 120.15523 * 179.97438 * 2 1 3 8 8 N 1.35654 * 121.64603 * 0.04633 * 7 2 1 9 9 C 1.29834 * 121.61442 * 179.97438 * 8 7 2 10 10 N 1.35861 * 123.37245 * 0.02562 * 9 8 7 11 11 C 1.46494 * 119.69779 * 179.97438 * 10 9 8 12 12 C 1.50709 * 109.47111 * 89.99929 * 11 10 9 13 13 O 1.21278 * 119.99703 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99745 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99628 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.47175 * 34.99401 * 15 14 12 17 17 C 1.53006 * 109.46982 * 274.99533 * 15 14 12 18 18 C 1.50698 * 109.46881 * 154.99798 * 15 14 12 19 19 H 1.07998 * 120.00315 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99610 * 180.02562 * 18 15 14 21 21 N 1.31509 * 120.00110 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99815 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47389 * 89.99725 * 22 20 18 24 24 H 1.48496 * 109.46946 * 209.99657 * 22 20 18 25 25 H 1.48505 * 109.47196 * 329.99852 * 22 20 18 26 26 C 1.35340 * 120.60760 * 359.97438 * 10 9 8 27 27 O 1.21723 * 121.30089 * 179.97438 * 26 10 9 28 28 H 1.08994 * 109.47365 * 270.05003 * 1 2 3 29 29 H 1.09004 * 109.46715 * 30.04566 * 1 2 3 30 30 H 1.08994 * 109.47279 * 150.04396 * 1 2 3 31 31 H 1.08000 * 119.58921 * 359.97235 * 3 2 1 32 32 H 1.08008 * 119.70974 * 179.97438 * 4 3 2 33 33 H 1.07999 * 120.23964 * 180.02562 * 5 4 3 34 34 H 1.08007 * 118.31338 * 179.71818 * 9 8 7 35 35 H 1.09003 * 109.47428 * 209.99440 * 11 10 9 36 36 H 1.08996 * 109.47197 * 329.99591 * 11 10 9 37 37 H 0.96996 * 120.00203 * 359.97438 * 14 12 11 38 38 H 1.08998 * 109.47058 * 299.99940 * 17 15 14 39 39 H 1.09003 * 109.46796 * 60.00069 * 17 15 14 40 40 H 1.08999 * 109.47021 * 179.97438 * 17 15 14 41 41 H 0.97005 * 119.99809 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1907 0.0000 4 6 3.5872 1.2066 0.0005 5 6 4.3016 0.0282 0.0020 6 6 3.6209 -1.1870 0.0024 7 6 2.2083 -1.2071 0.0005 8 7 1.5673 -2.4027 0.0001 9 6 2.2201 -3.5249 0.0001 10 7 3.5766 -3.6004 0.0011 11 6 4.2306 -4.9113 0.0016 12 6 4.4558 -5.3609 -1.4192 13 8 4.1041 -4.6559 -2.3412 14 7 5.0469 -6.5469 -1.6649 15 6 5.2653 -6.9842 -3.0460 16 1 5.4930 -6.1194 -3.6693 17 6 4.0023 -7.6715 -3.5691 18 6 6.4190 -7.9527 -3.0897 19 1 6.9380 -8.2159 -2.1799 20 6 6.8127 -8.5021 -4.2916 21 7 6.1811 -8.1813 -5.3995 22 14 8.2424 -9.7032 -4.3457 23 1 7.7339 -11.0866 -4.1638 24 1 8.9288 -9.5967 -5.6582 25 1 9.2009 -9.3812 -3.2581 26 6 4.3294 -2.4757 0.0015 27 8 5.5455 -2.5286 0.0028 28 1 -0.3634 0.0009 1.0276 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3633 -0.8903 -0.5131 31 1 1.6547 2.1236 -0.0005 32 1 4.1117 2.1508 0.0001 33 1 5.3815 0.0469 0.0028 34 1 1.6558 -4.4458 0.0045 35 1 5.1889 -4.8392 0.5159 36 1 3.5961 -5.6337 0.5150 37 1 5.3278 -7.1109 -0.9275 38 1 3.7747 -8.5363 -2.9459 39 1 3.1679 -6.9709 -3.5374 40 1 4.1647 -7.9964 -4.5968 41 1 6.4584 -8.5675 -6.2451 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:54 Heat of formation + Delta-G solvation = -23.709935 kcal Electronic energy + Delta-G solvation = -25583.872557 eV Core-core repulsion = 21849.695832 eV Total energy + Delta-G solvation = -3734.176725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70276 -39.33737 -38.36457 -37.43546 -34.99772 -34.21783 -33.03046 -32.48732 -30.34043 -29.70839 -27.70473 -27.11200 -25.31455 -24.62701 -24.05240 -21.45923 -21.08279 -19.67494 -18.97371 -18.53748 -17.73294 -17.19353 -16.12927 -15.59232 -15.38743 -15.26217 -15.18122 -14.90876 -14.61629 -14.11182 -14.02460 -13.85306 -13.57231 -13.16876 -12.76486 -12.53979 -12.47030 -12.32049 -12.04580 -11.92937 -11.80148 -11.69267 -11.16623 -10.98460 -10.81864 -10.41015 -10.36476 -10.29314 -10.21871 -10.02144 -9.18990 -9.11125 -9.09781 -8.61932 -8.06038 -8.04085 -6.17085 -4.26922 0.45937 0.71374 2.15032 2.28885 2.71837 3.11363 3.21751 3.28983 3.31232 3.77991 3.94579 3.99856 4.15730 4.32697 4.53361 4.61612 4.72148 4.88516 5.01996 5.11268 5.15049 5.18660 5.24738 5.35384 5.43975 5.56146 5.62162 5.94395 5.96679 6.09859 6.22199 6.27357 6.51864 6.68274 6.73858 6.85917 7.05902 7.31922 7.44257 7.61514 7.67860 7.78939 7.83498 8.07924 8.49785 8.68800 8.94355 9.40446 10.88918 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.002833 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.934474 B = 9880.500276 C =10223.975616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.081 4.081 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.046 4.046 6 C -0.188 4.188 7 C 0.156 3.844 8 N -0.528 5.528 9 C 0.391 3.609 10 N -0.527 5.527 11 C 0.071 3.929 12 C 0.487 3.513 13 O -0.543 6.543 14 N -0.701 5.701 15 C 0.265 3.735 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.536 4.536 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.883 5.883 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.552 3.448 27 O -0.505 6.505 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.199 0.801 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.391 0.609 38 H 0.028 0.972 39 H 0.014 0.986 40 H 0.091 0.909 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 12.721 14.709 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.083 4.083 3 C -0.100 4.100 4 C -0.158 4.158 5 C -0.066 4.066 6 C -0.194 4.194 7 C 0.046 3.954 8 N -0.248 5.248 9 C 0.104 3.896 10 N -0.248 5.248 11 C -0.056 4.056 12 C 0.269 3.731 13 O -0.421 6.421 14 N -0.349 5.349 15 C 0.164 3.836 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.574 4.574 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C 0.346 3.654 27 O -0.379 6.379 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.216 0.784 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.223 0.777 38 H 0.047 0.953 39 H 0.033 0.967 40 H 0.109 0.891 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.534 13.361 13.806 21.911 hybrid contribution 1.829 -1.089 0.112 2.132 sum -8.705 12.272 13.918 20.497 Atomic orbital electron populations 1.20628 0.89856 1.03118 1.02352 1.19619 0.96764 0.90442 1.01460 1.21157 0.94194 0.97438 0.97203 1.21119 0.94038 0.97995 1.02612 1.21000 1.00621 0.90450 0.94514 1.20544 0.93925 0.93846 1.11079 1.18623 0.89001 0.92001 0.95732 1.68606 1.35555 0.96376 1.24223 1.24720 0.80130 0.98521 0.86202 1.46170 1.07708 1.08400 1.62519 1.21930 1.02071 0.83317 0.98278 1.20470 0.79733 0.82822 0.90072 1.90721 1.51529 1.54361 1.45493 1.46482 1.58259 1.18262 1.11927 1.18792 0.93548 0.95136 0.76154 0.93384 1.22078 0.96347 0.97968 1.04095 1.21196 1.15281 1.26666 0.94267 0.91957 1.24894 0.96909 0.96576 0.95326 1.69898 1.40292 1.43272 0.98562 0.86424 0.81985 0.80941 0.77625 1.20488 1.21034 1.19806 1.18369 0.87119 0.83713 0.76238 1.90870 1.12305 1.86404 1.48309 0.91262 0.91854 0.90241 0.85118 0.85098 0.84583 0.78433 0.85770 0.86013 0.77651 0.95311 0.96702 0.89052 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.81 36.01 0.35 -0.57 16 2 C -0.08 -0.93 5.91 -104.30 -0.62 -1.55 16 3 C -0.08 -0.78 9.66 -39.55 -0.38 -1.16 16 4 C -0.14 -1.42 10.02 -39.52 -0.40 -1.81 16 5 C -0.05 -0.61 9.68 -39.35 -0.38 -0.99 16 6 C -0.19 -2.85 5.89 -104.78 -0.62 -3.47 16 7 C 0.16 2.17 6.60 -84.51 -0.56 1.62 16 8 N -0.53 -7.00 9.47 -12.01 -0.11 -7.12 16 9 C 0.39 4.73 11.40 -90.17 -1.03 3.70 16 10 N -0.53 -7.50 2.09 -120.14 -0.25 -7.75 16 11 C 0.07 0.90 5.85 -5.19 -0.03 0.87 16 12 C 0.49 9.13 7.86 -10.98 -0.09 9.04 16 13 O -0.54 -12.82 16.09 5.56 0.09 -12.73 16 14 N -0.70 -13.71 5.07 -54.93 -0.28 -13.99 16 15 C 0.27 6.61 2.56 -69.08 -0.18 6.43 16 16 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 17 C -0.15 -3.52 9.26 37.16 0.34 -3.17 16 18 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 22 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.55 9.32 7.66 -12.43 -0.10 9.23 16 27 O -0.51 -9.84 16.32 5.17 0.08 -9.76 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.08 0.80 7.57 -51.93 -0.39 0.41 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.14 1.72 7.83 -52.49 -0.41 1.30 16 34 H 0.20 1.54 7.99 -52.48 -0.42 1.12 16 35 H 0.12 1.53 7.46 -51.93 -0.39 1.15 16 36 H 0.12 0.93 7.99 -51.93 -0.41 0.51 16 37 H 0.39 6.29 8.54 -40.82 -0.35 5.95 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -35.34 353.12 -8.76 -44.11 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.16 Total: 5.02 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -4.07 Total: 5.56 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.02 Total: -53.00 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.17 Total: -22.49 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.34 -8.76 -44.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.400 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds