Wall clock time and date at job start Tue Mar 31 2020 10:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38112 * 119.92511 * 179.67938 * 11 10 9 13 13 C 1.38301 * 120.06988 * 0.61755 * 12 11 10 14 14 C 1.50695 * 119.93114 * 179.70420 * 13 12 11 15 15 N 1.46508 * 109.47103 * 269.97849 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.47105 * 180.02562 * 18 16 15 20 20 N 1.46495 * 109.47156 * 180.02562 * 19 18 16 21 21 C 1.36880 * 126.39872 * 90.00199 * 20 19 18 22 22 C 1.34671 * 106.81949 * 179.97438 * 21 20 19 23 23 N 1.34127 * 108.01992 * 0.02562 * 22 21 20 24 24 C 1.30498 * 109.25440 * 359.72162 * 23 22 21 25 25 C 1.38299 * 120.13638 * 359.68146 * 13 12 11 26 26 C 1.38101 * 120.07425 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.08003 * 119.96174 * 180.31972 * 12 11 10 30 30 H 1.08998 * 109.47086 * 29.97216 * 14 13 12 31 31 H 1.08996 * 109.47192 * 149.97791 * 14 13 12 32 32 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 34 34 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 35 35 H 1.08998 * 109.47672 * 300.00907 * 19 18 16 36 36 H 1.09005 * 109.46733 * 60.00805 * 19 18 16 37 37 H 1.07997 * 126.58619 * 359.97220 * 21 20 19 38 38 H 1.08004 * 125.98787 * 179.97438 * 22 21 20 39 39 H 1.08003 * 125.64857 * 180.29070 * 24 23 22 40 40 H 1.07999 * 119.96503 * 180.02562 * 25 13 12 41 41 H 1.07992 * 120.03608 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8883 -0.3396 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 6 6.4544 -10.5958 2.2832 20 7 6.7127 -11.1386 3.6192 21 6 5.9298 -12.0330 4.2978 22 6 6.5332 -12.2605 5.4801 23 7 7.6538 -11.5246 5.5224 24 6 7.7707 -10.8543 4.4089 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8450 -0.4355 30 1 3.8358 -7.8149 -1.0361 31 1 5.3320 -6.8560 -0.9360 32 1 4.2983 -7.1684 1.6738 33 1 6.1753 -8.5817 2.9944 34 1 4.6787 -9.5401 2.8951 35 1 5.9052 -11.3295 1.6932 36 1 7.4015 -10.3705 1.7928 37 1 5.0057 -12.4719 3.9517 38 1 6.1768 -12.9194 6.2582 39 1 8.5785 -10.1817 4.1609 40 1 5.2812 -4.5470 -0.1947 41 1 3.9527 -2.4845 -0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067926726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:20 Heat of formation + Delta-G solvation = 20.093973 kcal Electronic energy + Delta-G solvation = -23887.970668 eV Core-core repulsion = 20155.693423 eV Total energy + Delta-G solvation = -3732.277245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32004 -40.00388 -39.13817 -37.00804 -35.17998 -34.57014 -32.45376 -31.23408 -30.36811 -29.88918 -29.52754 -26.24616 -25.29617 -24.05488 -22.14572 -21.61970 -21.23516 -20.75569 -20.52976 -18.18189 -18.09620 -17.28452 -16.77077 -16.20149 -16.12096 -15.31130 -15.00460 -14.68948 -14.56491 -14.42419 -14.13226 -13.89403 -13.79017 -13.67835 -13.50672 -13.28956 -12.88148 -12.83039 -12.78345 -12.20305 -11.82800 -11.73415 -11.48772 -11.04648 -10.88904 -10.78607 -10.53986 -10.32405 -10.22104 -9.89511 -9.50901 -9.17349 -8.97428 -8.82092 -8.37791 -7.41476 -6.59283 -4.18310 1.73104 1.95586 2.04138 2.37463 2.38550 2.90817 3.03436 3.05240 3.10064 3.26835 3.84948 4.22276 4.23548 4.37232 4.44106 4.51574 4.69873 4.89443 4.94764 4.95710 5.07944 5.15256 5.17047 5.29604 5.30653 5.41691 5.55982 5.69676 5.78265 5.95747 6.03707 6.25595 6.29563 6.43873 6.50870 6.71347 6.85688 6.87126 7.05096 7.17674 7.27366 7.36183 7.62816 7.78765 7.85073 7.98773 8.85868 9.53020 10.58012 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.001935 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.587692 B =14463.216183 C =14913.964436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.195 4.195 12 C -0.054 4.054 13 C -0.219 4.219 14 C 0.179 3.821 15 N -0.718 5.718 16 C 0.514 3.486 17 O -0.549 6.549 18 C -0.159 4.159 19 C 0.121 3.879 20 N -0.459 5.459 21 C -0.056 4.056 22 C -0.032 4.032 23 N -0.497 5.497 24 C 0.181 3.819 25 C -0.050 4.050 26 C -0.237 4.237 27 H 0.272 0.728 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.404 0.596 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.204 0.796 40 H 0.108 0.892 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.178 -17.518 4.808 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.220 4.220 14 C 0.057 3.943 15 N -0.369 5.369 16 C 0.300 3.700 17 O -0.427 6.427 18 C -0.200 4.200 19 C -0.002 4.002 20 N -0.142 5.142 21 C -0.189 4.189 22 C -0.180 4.180 23 N -0.215 5.215 24 C -0.101 4.101 25 C -0.069 4.069 26 C -0.257 4.257 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.238 0.762 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.191 0.809 38 H 0.186 0.814 39 H 0.221 0.779 40 H 0.126 0.874 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.556 -17.599 4.630 21.038 hybrid contribution -0.389 1.179 -0.316 1.281 sum 10.167 -16.420 4.314 19.789 Atomic orbital electron populations 1.70030 1.06026 1.27979 1.45124 1.25337 0.95882 0.98991 0.96260 0.85683 0.78931 0.79828 0.78846 1.19746 1.20140 1.19116 1.21363 0.91881 0.80674 1.53117 0.88875 1.83977 1.34557 1.11591 1.77275 1.19446 0.90327 0.88065 0.91582 1.20219 0.99708 0.90279 1.11269 1.20526 0.92742 0.96833 0.97187 1.19172 0.93554 0.93435 1.15851 1.20009 0.98689 0.92734 0.82885 1.46382 1.54167 1.25668 1.10650 1.20274 0.78333 0.80918 0.90521 1.90725 1.51640 1.59785 1.40593 1.22009 1.03078 0.98392 0.96486 1.21603 1.02570 0.95436 0.80551 1.45656 1.19360 1.33677 1.15497 1.22794 1.00517 0.99845 0.95748 1.22329 0.94265 1.03651 0.97740 1.70306 1.19670 1.10477 1.21091 1.25059 0.93759 1.03422 0.87888 1.20636 0.98357 0.91672 0.96230 1.21165 0.93780 0.98988 1.11723 0.91797 0.86335 0.86989 0.91411 0.91431 0.76170 0.88006 0.88070 0.88073 0.87827 0.80919 0.81420 0.77948 0.87409 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.20 13.67 55.48 0.76 -23.44 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.39 -10.49 9.49 30.89 0.29 -10.19 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.65 9.76 0.05 0.00 -4.65 16 10 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 11 C -0.20 -3.77 9.99 -39.39 -0.39 -4.16 16 12 C -0.05 -0.85 9.69 -39.60 -0.38 -1.24 16 13 C -0.22 -3.23 5.25 -104.58 -0.55 -3.78 16 14 C 0.18 2.21 5.80 -5.19 -0.03 2.18 16 15 N -0.72 -7.32 5.55 -61.47 -0.34 -7.67 16 16 C 0.51 5.09 7.83 -10.99 -0.09 5.01 16 17 O -0.55 -7.31 15.98 5.56 0.09 -7.22 16 18 C -0.16 -1.03 6.02 -27.88 -0.17 -1.19 16 19 C 0.12 0.79 5.44 -4.04 -0.02 0.77 16 20 N -0.46 -3.51 2.75 -118.58 -0.33 -3.83 16 21 C -0.06 -0.43 11.58 -16.56 -0.19 -0.63 16 22 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 23 N -0.50 -5.55 11.25 -14.66 -0.16 -5.72 16 24 C 0.18 1.57 12.56 -90.38 -1.14 0.43 16 25 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 26 C -0.24 -4.71 9.17 -39.39 -0.36 -5.07 16 27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.40 3.62 8.46 -40.82 -0.35 3.27 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.13 2.57 5.64 -52.49 -0.30 2.28 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -32.67 360.97 -8.66 -41.33 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.11 Total: 6.41 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.98 Total: -15.27 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.07 Total: -40.65 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.67 -8.66 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067926726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.421 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds