Wall clock time and date at job start Tue Mar 31 2020 10:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38112 * 119.92511 * 179.67938 * 11 10 9 13 13 C 1.38301 * 120.06988 * 0.61755 * 12 11 10 14 14 C 1.50695 * 119.93114 * 179.70420 * 13 12 11 15 15 N 1.46508 * 109.47103 * 269.97849 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.47105 * 180.02562 * 18 16 15 20 20 N 1.46495 * 109.47156 * 180.02562 * 19 18 16 21 21 C 1.36880 * 126.39872 * 90.00199 * 20 19 18 22 22 C 1.34671 * 106.81949 * 179.97438 * 21 20 19 23 23 N 1.34127 * 108.01992 * 0.02562 * 22 21 20 24 24 C 1.30498 * 109.25440 * 359.72162 * 23 22 21 25 25 C 1.38299 * 120.13638 * 359.68146 * 13 12 11 26 26 C 1.38101 * 120.07425 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.08003 * 119.96174 * 180.31972 * 12 11 10 30 30 H 1.08998 * 109.47086 * 29.97216 * 14 13 12 31 31 H 1.08996 * 109.47192 * 149.97791 * 14 13 12 32 32 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 34 34 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 35 35 H 1.08998 * 109.47672 * 300.00907 * 19 18 16 36 36 H 1.09005 * 109.46733 * 60.00805 * 19 18 16 37 37 H 1.07997 * 126.58619 * 359.97220 * 21 20 19 38 38 H 1.08004 * 125.98787 * 179.97438 * 22 21 20 39 39 H 1.08003 * 125.64857 * 180.29070 * 24 23 22 40 40 H 1.07999 * 119.96503 * 180.02562 * 25 13 12 41 41 H 1.07992 * 120.03608 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8883 -0.3396 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 6 6.4544 -10.5958 2.2832 20 7 6.7127 -11.1386 3.6192 21 6 5.9298 -12.0330 4.2978 22 6 6.5332 -12.2605 5.4801 23 7 7.6538 -11.5246 5.5224 24 6 7.7707 -10.8543 4.4089 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8450 -0.4355 30 1 3.8358 -7.8149 -1.0361 31 1 5.3320 -6.8560 -0.9360 32 1 4.2983 -7.1684 1.6738 33 1 6.1753 -8.5817 2.9944 34 1 4.6787 -9.5401 2.8951 35 1 5.9052 -11.3295 1.6932 36 1 7.4015 -10.3705 1.7928 37 1 5.0057 -12.4719 3.9517 38 1 6.1768 -12.9194 6.2582 39 1 8.5785 -10.1817 4.1609 40 1 5.2812 -4.5470 -0.1947 41 1 3.9527 -2.4845 -0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067926726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:19 Heat of formation + Delta-G solvation = -0.020689 kcal Electronic energy + Delta-G solvation = -23888.842905 eV Core-core repulsion = 20155.693423 eV Total energy + Delta-G solvation = -3733.149482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.91952 -41.04475 -40.54186 -38.52815 -35.89934 -35.54274 -34.28845 -32.11158 -31.82352 -30.92361 -30.21426 -27.74139 -26.63306 -24.93734 -23.65841 -22.23438 -22.19242 -21.83120 -21.30324 -19.88544 -18.95640 -18.69007 -17.68611 -17.04617 -16.88742 -16.40149 -16.32701 -16.02749 -15.69792 -15.51205 -15.37143 -15.03441 -14.86381 -14.58403 -14.41777 -14.36745 -14.07409 -13.93074 -13.63947 -13.39303 -13.24226 -13.03388 -12.55910 -12.37809 -12.31974 -12.25944 -12.11865 -11.21571 -11.14160 -10.91880 -10.80925 -10.56521 -10.08011 -9.81975 -9.42506 -9.01809 -8.49457 -6.17650 0.53268 0.56701 1.15739 1.35327 1.43476 1.52142 1.60814 1.77631 2.16077 2.25681 2.40469 2.85665 3.16027 3.48497 3.65749 3.75073 3.82718 3.92410 3.94151 4.02380 4.16479 4.17303 4.41455 4.42778 4.48767 4.55860 4.65574 4.76546 4.80381 4.82702 4.84288 5.03655 5.13320 5.25698 5.37189 5.41084 5.51947 5.68531 5.73674 5.85534 6.00406 6.15511 6.29193 6.54798 6.95465 7.17340 7.20664 7.74744 8.73269 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.001935 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.587692 B =14463.216183 C =14913.964436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.121 3.879 11 C -0.206 4.206 12 C -0.044 4.044 13 C -0.183 4.183 14 C 0.184 3.816 15 N -0.715 5.715 16 C 0.520 3.480 17 O -0.581 6.581 18 C -0.146 4.146 19 C 0.125 3.875 20 N -0.456 5.456 21 C -0.051 4.051 22 C -0.059 4.059 23 N -0.540 5.540 24 C 0.175 3.825 25 C -0.046 4.046 26 C -0.245 4.245 27 H 0.273 0.727 28 H 0.114 0.886 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.199 0.801 38 H 0.178 0.822 39 H 0.227 0.773 40 H 0.140 0.860 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.328 -19.443 4.763 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.070 3.930 11 C -0.225 4.225 12 C -0.062 4.062 13 C -0.184 4.184 14 C 0.061 3.939 15 N -0.366 5.366 16 C 0.307 3.693 17 O -0.462 6.462 18 C -0.187 4.187 19 C 0.002 3.998 20 N -0.139 5.139 21 C -0.184 4.184 22 C -0.206 4.206 23 N -0.259 5.259 24 C -0.108 4.108 25 C -0.064 4.064 26 C -0.264 4.264 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.166 0.834 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.248 0.752 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.216 0.784 38 H 0.196 0.804 39 H 0.244 0.756 40 H 0.158 0.842 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.737 -19.583 4.598 23.809 hybrid contribution -0.902 1.334 -0.335 1.645 sum 11.835 -18.249 4.263 22.164 Atomic orbital electron populations 1.70174 1.08014 1.28865 1.48566 1.26585 0.96836 1.02776 0.95832 0.84597 0.77888 0.74625 0.79206 1.18940 1.19724 1.17514 1.21823 0.92559 0.81320 1.53205 0.87876 1.83947 1.36109 1.12694 1.80828 1.20020 0.91686 0.87967 0.93305 1.20466 1.00091 0.90503 1.11470 1.20898 0.93141 0.96942 0.95232 1.19516 0.93431 0.94220 1.11216 1.19885 0.98426 0.91313 0.84259 1.46198 1.54442 1.25994 1.09997 1.20699 0.77161 0.80123 0.91337 1.90727 1.52826 1.60596 1.42051 1.21929 1.03980 0.98432 0.94329 1.21611 1.02826 0.95447 0.79867 1.45718 1.19036 1.33457 1.15665 1.23203 1.00964 0.99167 0.95095 1.22673 0.94461 1.04408 0.99065 1.70267 1.20975 1.11909 1.22746 1.25547 0.94459 1.03306 0.87463 1.20956 0.99846 0.90759 0.94869 1.21259 0.92999 1.00164 1.12004 0.91805 0.86792 0.83387 0.90752 0.90977 0.75161 0.86554 0.86656 0.87961 0.87523 0.78370 0.80449 0.75631 0.84198 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.87 13.67 21.62 0.30 -54.57 16 2 C -0.02 -1.23 5.49 84.84 0.47 -0.77 16 3 Si 1.02 41.36 29.55 68.60 2.03 43.39 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.41 -23.07 9.49 67.92 0.64 -22.42 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 9 O -0.23 -13.20 9.76 -22.72 -0.22 -13.42 16 10 C 0.12 5.60 6.65 22.58 0.15 5.75 16 11 C -0.21 -7.92 9.99 22.39 0.22 -7.70 16 12 C -0.04 -1.25 9.69 22.25 0.22 -1.03 16 13 C -0.18 -4.71 5.25 -19.84 -0.10 -4.81 16 14 C 0.18 3.70 5.80 85.63 0.50 4.19 16 15 N -0.71 -11.39 5.55 -466.80 -2.59 -13.98 16 16 C 0.52 8.18 7.83 87.66 0.69 8.87 16 17 O -0.58 -13.44 15.98 -3.02 -0.05 -13.49 16 18 C -0.15 -1.29 6.02 29.85 0.18 -1.11 16 19 C 0.12 1.21 5.44 86.38 0.47 1.68 16 20 N -0.46 -5.71 2.75 -529.07 -1.46 -7.17 16 21 C -0.05 -0.67 11.58 83.09 0.96 0.30 16 22 C -0.06 -1.03 11.87 83.52 0.99 -0.04 16 23 N -0.54 -11.49 11.25 -200.31 -2.25 -13.74 16 24 C 0.17 2.67 12.56 180.26 2.26 4.94 16 25 C -0.05 -1.35 9.69 22.25 0.22 -1.14 16 26 C -0.25 -9.67 9.17 22.39 0.21 -9.46 16 27 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 32 H 0.41 5.49 8.46 -92.71 -0.78 4.70 16 33 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.11 1.00 8.10 -2.38 -0.02 0.98 16 37 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.23 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 41 H 0.12 4.85 5.64 -2.91 -0.02 4.83 16 Total: -1.00 -76.30 360.97 4.10 -72.20 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.28 Total: 23.56 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 8.07 Total: -22.76 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -6.00 Total: -89.46 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.27 Total: -26.92 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -76.30 4.10 -72.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067926726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.178 kcal (2) G-P(sol) polarization free energy of solvation -76.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds