Wall clock time and date at job start Tue Mar 31 2020 10:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48503 * 109.46943 * 239.99850 * 3 2 1 5 5 H 1.48506 * 109.46864 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47428 * 119.99742 * 3 2 1 7 7 C 1.38656 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00291 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99812 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99844 * 185.05392 * 9 7 2 11 11 C 1.38898 * 120.07164 * 354.48561 * 10 9 7 12 12 C 1.38074 * 119.93380 * 179.97438 * 11 10 9 13 13 C 1.38331 * 120.06643 * 359.75270 * 12 11 10 14 14 C 1.38279 * 120.13513 * 0.50415 * 13 12 11 15 15 C 1.50704 * 119.96164 * 179.76948 * 14 13 12 16 16 C 1.50706 * 109.46776 * 269.72407 * 15 14 13 17 17 O 1.21273 * 120.00142 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99487 * 180.02562 * 16 15 14 19 19 C 1.46504 * 119.99890 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47257 * 179.97438 * 19 18 16 21 21 N 1.46496 * 109.47037 * 179.97438 * 20 19 18 22 22 C 1.36881 * 126.40149 * 89.99896 * 21 20 19 23 23 C 1.34670 * 106.82214 * 179.97438 * 22 21 20 24 24 N 1.34124 * 108.01744 * 0.02562 * 23 22 21 25 25 C 1.30508 * 109.25861 * 359.72445 * 24 23 22 26 26 C 1.38120 * 120.07024 * 359.49508 * 14 13 12 27 27 H 0.96993 * 120.00293 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.02847 * 359.95793 * 11 10 9 29 29 H 1.07997 * 119.96574 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.92603 * 180.27254 * 13 12 11 31 31 H 1.08993 * 109.46985 * 149.72546 * 15 14 13 32 32 H 1.08999 * 109.46849 * 29.72216 * 15 14 13 33 33 H 0.97003 * 120.00202 * 359.97438 * 18 16 15 34 34 H 1.09003 * 109.47113 * 60.00005 * 19 18 16 35 35 H 1.08999 * 109.46541 * 299.99764 * 19 18 16 36 36 H 1.08996 * 109.46989 * 300.00147 * 20 19 18 37 37 H 1.09003 * 109.47019 * 59.99992 * 20 19 18 38 38 H 1.08001 * 126.58701 * 359.96889 * 22 21 20 39 39 H 1.07991 * 125.99089 * 180.02562 * 23 22 21 40 40 H 1.07995 * 125.64667 * 180.28915 * 25 24 23 41 41 H 1.07999 * 120.03457 * 180.23430 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6965 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5046 0.1076 11 6 3.4575 -3.4394 0.0956 12 6 4.2026 -4.5967 0.2052 13 6 3.5687 -5.8196 0.3321 14 6 2.1876 -5.8883 0.3391 15 6 1.5011 -7.2233 0.4724 16 6 1.2661 -7.8061 -0.8974 17 8 1.6214 -7.1977 -1.8844 18 7 0.6609 -9.0035 -1.0253 19 6 0.4329 -9.5705 -2.3568 20 6 -0.2642 -10.9257 -2.2216 21 7 -0.4928 -11.4923 -3.5530 22 6 0.3612 -12.3065 -4.2469 23 6 -0.2387 -12.5929 -5.4181 24 7 -1.4264 -11.9701 -5.4390 25 6 -1.5878 -11.3134 -4.3228 26 6 1.4367 -4.7342 0.2298 27 1 -0.4850 0.8400 -0.0004 28 1 3.9529 -2.4844 0.0003 29 1 5.2813 -4.5465 0.1963 30 1 4.1537 -6.7229 0.4222 31 1 0.5457 -7.0914 0.9800 32 1 2.1302 -7.8990 1.0518 33 1 0.3770 -9.4903 -0.2358 34 1 1.3886 -9.7030 -2.8639 35 1 -0.1955 -8.8945 -2.9367 36 1 0.3645 -11.6014 -1.6418 37 1 -1.2199 -10.7937 -1.7143 38 1 1.3301 -12.6526 -3.9183 39 1 0.1656 -13.2149 -6.2028 40 1 -2.4528 -10.7229 -4.0595 41 1 0.3581 -4.7882 0.2392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089738218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:35 Heat of formation + Delta-G solvation = 28.145955 kcal Electronic energy + Delta-G solvation = -24158.896890 eV Core-core repulsion = 20426.968805 eV Total energy + Delta-G solvation = -3731.928085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.36512 -39.94355 -38.81593 -36.64603 -35.97352 -33.76111 -32.40658 -32.01822 -29.93436 -29.41996 -28.97116 -26.94406 -25.24354 -23.88550 -21.70762 -21.67808 -21.39117 -21.21490 -20.29322 -17.90183 -17.69249 -17.16008 -16.82944 -16.22386 -16.00741 -15.19617 -15.13131 -14.88853 -14.48885 -14.37394 -14.19782 -13.96940 -13.81897 -13.52186 -13.41447 -13.39854 -12.76612 -12.63119 -12.42697 -12.21892 -11.79663 -11.53185 -11.25609 -10.83481 -10.78196 -10.62389 -10.45002 -10.31729 -10.08385 -9.85872 -9.38490 -9.32642 -8.85376 -8.81363 -8.06663 -7.20715 -6.42013 -4.01152 1.67351 2.03321 2.26018 2.40757 2.64029 2.88392 3.13907 3.14886 3.18553 3.19327 3.98774 4.03965 4.13278 4.41992 4.50613 4.55175 4.58319 4.83647 5.03303 5.06784 5.11390 5.15353 5.20405 5.37987 5.43325 5.47518 5.64004 5.74706 5.88068 5.93125 6.07927 6.18381 6.34370 6.39710 6.66122 6.79618 6.92402 7.08511 7.23586 7.26239 7.37973 7.45551 7.75225 7.83713 8.02871 8.16199 9.03595 9.74134 10.76158 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.002132 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.403383 B =13130.710980 C =13850.572802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.035 4.035 15 C -0.091 4.091 16 C 0.515 3.485 17 O -0.512 6.512 18 N -0.740 5.740 19 C 0.106 3.894 20 C 0.096 3.904 21 N -0.458 5.458 22 C -0.056 4.056 23 C -0.029 4.029 24 N -0.495 5.495 25 C 0.185 3.815 26 C -0.175 4.175 27 H 0.270 0.730 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.400 0.600 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.206 0.794 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 -23.580 0.535 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.036 4.036 15 C -0.131 4.131 16 C 0.302 3.698 17 O -0.385 6.385 18 N -0.396 5.396 19 C -0.019 4.019 20 C -0.027 4.027 21 N -0.142 5.142 22 C -0.188 4.188 23 C -0.177 4.177 24 N -0.213 5.213 25 C -0.097 4.097 26 C -0.194 4.194 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.192 0.808 39 H 0.187 0.813 40 H 0.222 0.778 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.184 -22.860 -0.751 22.873 hybrid contribution 1.020 0.614 0.999 1.554 sum 1.204 -22.246 0.248 22.279 Atomic orbital electron populations 1.70024 1.05937 1.27704 1.46277 1.25277 0.95844 0.98789 0.96625 0.85788 0.78692 0.79821 0.79162 1.19522 1.20300 1.19526 1.21270 0.91758 0.80852 1.52894 0.89166 1.83977 1.34224 1.11377 1.78671 1.19281 0.90265 0.87992 0.92383 1.21183 0.93840 0.99000 1.10869 1.20683 0.98398 0.92335 0.97886 1.20342 0.93278 0.96918 1.11093 1.18636 0.93236 0.91705 1.00019 1.20577 1.02735 0.95957 0.93850 1.20839 0.76797 0.79944 0.92250 1.90790 1.48548 1.59202 1.39952 1.45857 1.63780 1.21865 1.08088 1.21546 1.01335 0.92998 0.86045 1.21984 1.03293 0.95259 0.82186 1.45402 1.15931 1.37336 1.15503 1.22781 0.98720 1.01571 0.95728 1.22339 0.92949 1.04511 0.97880 1.70321 1.18763 1.11902 1.20306 1.25114 0.92946 1.03425 0.88203 1.19939 0.99042 0.90006 1.10453 0.92024 0.85592 0.87456 0.87967 0.88082 0.88262 0.76563 0.90829 0.90624 0.88293 0.87978 0.80837 0.81307 0.77786 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.18 -5.22 9.76 0.03 0.00 -5.22 16 10 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 11 C -0.23 -5.17 9.17 -39.40 -0.36 -5.53 16 12 C -0.07 -1.43 10.04 -39.61 -0.40 -1.82 16 13 C -0.20 -3.49 9.70 -39.53 -0.38 -3.87 16 14 C -0.04 -0.63 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.10 5.83 -29.03 -0.17 -1.27 16 16 C 0.52 6.72 7.82 -10.98 -0.09 6.63 16 17 O -0.51 -9.60 16.03 5.56 0.09 -9.51 16 18 N -0.74 -5.84 5.56 -60.29 -0.33 -6.18 16 19 C 0.11 0.82 6.00 -4.04 -0.02 0.80 16 20 C 0.10 0.42 6.26 -4.04 -0.03 0.40 16 21 N -0.46 -3.29 2.75 -118.58 -0.33 -3.61 16 22 C -0.06 -0.42 11.58 -16.56 -0.19 -0.61 16 23 C -0.03 -0.27 11.87 -17.81 -0.21 -0.49 16 24 N -0.50 -5.63 11.25 -14.67 -0.17 -5.79 16 25 C 0.19 1.62 12.56 -90.37 -1.14 0.48 16 26 C -0.18 -3.78 9.65 -39.40 -0.38 -4.16 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.13 2.82 5.64 -52.48 -0.30 2.52 16 29 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 30 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.40 1.58 8.47 -40.82 -0.35 1.23 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.21 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.11 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -38.18 361.08 -8.56 -46.75 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.12 Total: 4.05 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -3.89 Total: -16.81 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.07 Total: -40.49 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.73 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.18 -8.56 -46.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089738218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.891 kcal (2) G-P(sol) polarization free energy of solvation -38.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds