Wall clock time and date at job start Tue Mar 31 2020 10:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86804 * 120.00020 * 2 1 4 4 H 1.48503 * 109.46943 * 239.99850 * 3 2 1 5 5 H 1.48506 * 109.46864 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47428 * 119.99742 * 3 2 1 7 7 C 1.38656 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00291 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99812 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99844 * 185.05392 * 9 7 2 11 11 C 1.38898 * 120.07164 * 354.48561 * 10 9 7 12 12 C 1.38074 * 119.93380 * 179.97438 * 11 10 9 13 13 C 1.38331 * 120.06643 * 359.75270 * 12 11 10 14 14 C 1.38279 * 120.13513 * 0.50415 * 13 12 11 15 15 C 1.50704 * 119.96164 * 179.76948 * 14 13 12 16 16 C 1.50706 * 109.46776 * 269.72407 * 15 14 13 17 17 O 1.21273 * 120.00142 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99487 * 180.02562 * 16 15 14 19 19 C 1.46504 * 119.99890 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47257 * 179.97438 * 19 18 16 21 21 N 1.46496 * 109.47037 * 179.97438 * 20 19 18 22 22 C 1.36881 * 126.40149 * 89.99896 * 21 20 19 23 23 C 1.34670 * 106.82214 * 179.97438 * 22 21 20 24 24 N 1.34124 * 108.01744 * 0.02562 * 23 22 21 25 25 C 1.30508 * 109.25861 * 359.72445 * 24 23 22 26 26 C 1.38120 * 120.07024 * 359.49508 * 14 13 12 27 27 H 0.96993 * 120.00293 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.02847 * 359.95793 * 11 10 9 29 29 H 1.07997 * 119.96574 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.92603 * 180.27254 * 13 12 11 31 31 H 1.08993 * 109.46985 * 149.72546 * 15 14 13 32 32 H 1.08999 * 109.46849 * 29.72216 * 15 14 13 33 33 H 0.97003 * 120.00202 * 359.97438 * 18 16 15 34 34 H 1.09003 * 109.47113 * 60.00005 * 19 18 16 35 35 H 1.08999 * 109.46541 * 299.99764 * 19 18 16 36 36 H 1.08996 * 109.46989 * 300.00147 * 20 19 18 37 37 H 1.09003 * 109.47019 * 59.99992 * 20 19 18 38 38 H 1.08001 * 126.58701 * 359.96889 * 22 21 20 39 39 H 1.07991 * 125.99089 * 180.02562 * 23 22 21 40 40 H 1.07995 * 125.64667 * 180.28915 * 25 24 23 41 41 H 1.07999 * 120.03457 * 180.23430 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6965 1.2124 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5046 0.1076 11 6 3.4575 -3.4394 0.0956 12 6 4.2026 -4.5967 0.2052 13 6 3.5687 -5.8196 0.3321 14 6 2.1876 -5.8883 0.3391 15 6 1.5011 -7.2233 0.4724 16 6 1.2661 -7.8061 -0.8974 17 8 1.6214 -7.1977 -1.8844 18 7 0.6609 -9.0035 -1.0253 19 6 0.4329 -9.5705 -2.3568 20 6 -0.2642 -10.9257 -2.2216 21 7 -0.4928 -11.4923 -3.5530 22 6 0.3612 -12.3065 -4.2469 23 6 -0.2387 -12.5929 -5.4181 24 7 -1.4264 -11.9701 -5.4390 25 6 -1.5878 -11.3134 -4.3228 26 6 1.4367 -4.7342 0.2298 27 1 -0.4850 0.8400 -0.0004 28 1 3.9529 -2.4844 0.0003 29 1 5.2813 -4.5465 0.1963 30 1 4.1537 -6.7229 0.4222 31 1 0.5457 -7.0914 0.9800 32 1 2.1302 -7.8990 1.0518 33 1 0.3770 -9.4903 -0.2358 34 1 1.3886 -9.7030 -2.8639 35 1 -0.1955 -8.8945 -2.9367 36 1 0.3645 -11.6014 -1.6418 37 1 -1.2199 -10.7937 -1.7143 38 1 1.3301 -12.6526 -3.9183 39 1 0.1656 -13.2149 -6.2028 40 1 -2.4528 -10.7229 -4.0595 41 1 0.3581 -4.7882 0.2392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089738218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:34 Heat of formation + Delta-G solvation = 1.583213 kcal Electronic energy + Delta-G solvation = -24160.048737 eV Core-core repulsion = 20426.968805 eV Total energy + Delta-G solvation = -3733.079932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.95215 -41.14124 -40.39592 -38.25200 -36.82800 -34.53326 -34.33709 -33.43548 -30.96912 -30.52769 -29.94940 -28.14973 -27.21373 -24.60074 -23.27413 -22.73306 -22.28968 -21.94796 -21.40767 -19.52593 -18.84183 -18.50757 -17.78244 -17.09880 -16.93143 -16.69039 -16.27130 -16.11853 -15.85771 -15.50997 -15.48332 -14.96160 -14.86865 -14.65771 -14.61998 -14.30738 -14.09282 -13.95679 -13.59701 -13.31667 -12.95977 -12.88630 -12.58858 -12.46593 -12.39585 -12.21702 -12.13149 -11.21312 -11.09902 -10.94406 -10.79847 -10.64412 -10.21014 -9.63676 -9.45748 -8.97740 -8.47423 -6.15987 0.51558 0.76013 1.09197 1.33309 1.44473 1.49939 1.64362 1.66502 2.17339 2.22343 2.40981 2.85717 3.18434 3.44895 3.64580 3.69684 3.80643 3.89135 4.04387 4.10960 4.15790 4.26827 4.32401 4.40288 4.48096 4.58470 4.62297 4.67495 4.74522 4.80119 4.80675 5.07491 5.12578 5.30135 5.31289 5.33958 5.65321 5.73093 5.75424 5.81933 6.02440 6.24143 6.25421 6.53951 6.97037 7.13627 7.28539 7.78683 8.75869 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.002132 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.403383 B =13130.710980 C =13850.572802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.109 3.891 11 C -0.248 4.248 12 C -0.076 4.076 13 C -0.181 4.181 14 C -0.027 4.027 15 C -0.089 4.089 16 C 0.515 3.485 17 O -0.581 6.581 18 N -0.711 5.711 19 C 0.109 3.891 20 C 0.105 3.895 21 N -0.457 5.457 22 C -0.047 4.047 23 C -0.062 4.062 24 N -0.542 5.542 25 C 0.174 3.826 26 C -0.194 4.194 27 H 0.273 0.727 28 H 0.116 0.884 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.425 0.575 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.204 0.796 39 H 0.178 0.822 40 H 0.226 0.774 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -26.546 2.415 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.059 3.941 11 C -0.267 4.267 12 C -0.094 4.094 13 C -0.199 4.199 14 C -0.028 4.028 15 C -0.128 4.128 16 C 0.303 3.697 17 O -0.459 6.459 18 N -0.367 5.367 19 C -0.016 4.016 20 C -0.017 4.017 21 N -0.140 5.140 22 C -0.180 4.180 23 C -0.209 4.209 24 N -0.261 5.261 25 C -0.108 4.108 26 C -0.213 4.213 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.264 0.736 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.221 0.779 39 H 0.195 0.805 40 H 0.243 0.757 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.162 -25.935 1.181 26.052 hybrid contribution 0.496 1.154 0.428 1.327 sum 2.659 -24.781 1.609 24.975 Atomic orbital electron populations 1.70175 1.08000 1.28833 1.48997 1.26611 0.96909 1.02754 0.95908 0.84645 0.77398 0.74222 0.79907 1.18426 1.19470 1.17931 1.21775 0.92471 0.81535 1.53303 0.88308 1.83934 1.35889 1.12563 1.81752 1.19923 0.91698 0.88031 0.94422 1.21299 0.93187 1.00253 1.11982 1.21148 1.00216 0.91611 0.96390 1.21003 0.93612 0.98006 1.07270 1.19241 0.93733 0.93075 0.96755 1.20710 1.04551 0.93404 0.94120 1.20986 0.76385 0.80720 0.91633 1.90787 1.51881 1.61311 1.41933 1.45513 1.61550 1.20274 1.09334 1.21480 1.00401 0.94394 0.85364 1.22120 1.04936 0.93472 0.81185 1.45552 1.15297 1.36871 1.16277 1.23240 0.99343 1.00477 0.94957 1.22699 0.93118 1.05639 0.99424 1.70257 1.20249 1.13475 1.22104 1.25556 0.94057 1.03237 0.87961 1.20256 0.99362 0.90492 1.11203 0.91844 0.86606 0.83804 0.83283 0.85602 0.83302 0.73612 0.92491 0.93266 0.85147 0.85357 0.77913 0.80468 0.75743 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.92 13.67 21.61 0.30 -57.63 16 2 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 3 Si 1.02 44.01 29.55 68.60 2.03 46.03 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.41 -25.05 9.49 67.92 0.64 -24.41 16 8 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 9 O -0.23 -14.71 9.76 -22.81 -0.22 -14.93 16 10 C 0.11 5.72 6.65 22.58 0.15 5.87 16 11 C -0.25 -11.40 9.17 22.39 0.21 -11.20 16 12 C -0.08 -2.72 10.04 22.25 0.22 -2.50 16 13 C -0.18 -5.68 9.70 22.30 0.22 -5.46 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 15 C -0.09 -1.73 5.83 29.10 0.17 -1.56 16 16 C 0.52 11.86 7.82 87.66 0.69 12.55 16 17 O -0.58 -21.25 16.03 -3.01 -0.05 -21.29 16 18 N -0.71 -8.40 5.56 -463.05 -2.57 -10.97 16 19 C 0.11 1.42 6.00 86.38 0.52 1.94 16 20 C 0.11 0.49 6.26 86.38 0.54 1.04 16 21 N -0.46 -5.46 2.75 -529.07 -1.46 -6.92 16 22 C -0.05 -0.61 11.58 83.09 0.96 0.35 16 23 C -0.06 -1.14 11.87 83.52 0.99 -0.15 16 24 N -0.54 -12.35 11.25 -200.32 -2.25 -14.60 16 25 C 0.17 2.86 12.56 180.26 2.26 5.13 16 26 C -0.19 -8.55 9.65 22.39 0.22 -8.33 16 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 29 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 30 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.13 1.92 8.08 -2.39 -0.02 1.90 16 32 H 0.15 1.51 8.08 -2.39 -0.02 1.49 16 33 H 0.43 0.94 8.47 -92.71 -0.79 0.15 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.18 2.57 8.06 -2.92 -0.02 2.55 16 40 H 0.23 2.30 8.06 -2.91 -0.02 2.27 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -93.97 361.08 4.21 -89.76 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.28 Total: 19.27 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 8.17 Total: -28.72 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -5.99 Total: -90.12 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.27 Total: -36.23 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -93.97 4.21 -89.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089738218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.341 kcal (2) G-P(sol) polarization free energy of solvation -93.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds