Wall clock time and date at job start Tue Mar 31 2020 10:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47095 * 269.99883 * 3 2 1 5 5 H 1.48500 * 109.47198 * 29.99963 * 3 2 1 6 6 H 1.48503 * 109.46982 * 149.99610 * 3 2 1 7 7 C 1.37885 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99903 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46875 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00235 * 263.34603 * 10 9 7 12 12 C 1.52999 * 109.47318 * 265.15628 * 11 10 9 13 13 C 1.53001 * 117.50161 * 243.74482 * 12 11 10 14 14 C 1.52999 * 117.49955 * 175.08182 * 12 11 10 15 15 C 1.34780 * 119.99798 * 83.34805 * 10 9 7 16 16 O 1.21572 * 119.99790 * 183.90739 * 15 10 9 17 17 C 1.47744 * 120.00509 * 3.89699 * 15 10 9 18 18 C 1.41110 * 126.30475 * 173.63194 * 17 15 10 19 19 C 1.37010 * 105.41941 * 180.23188 * 18 17 15 20 20 C 1.47324 * 126.63148 * 179.77833 * 19 18 17 21 21 C 1.36153 * 125.94694 * 179.97438 * 20 19 18 22 22 C 1.40878 * 106.72783 * 179.97438 * 21 20 19 23 23 C 1.34756 * 107.05831 * 0.02562 * 22 21 20 24 24 O 1.34331 * 108.70801 * 359.76221 * 23 22 21 25 25 N 1.36544 * 106.72870 * 359.65016 * 19 18 17 26 26 H 0.97007 * 125.02760 * 180.11951 * 25 19 18 27 27 N 1.28448 * 109.94824 * 0.37285 * 25 19 18 28 28 H 0.97000 * 120.00062 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47188 * 59.99598 * 9 7 2 30 30 H 1.09000 * 109.47048 * 299.99569 * 9 7 2 31 31 H 1.09002 * 109.47096 * 25.15601 * 11 10 9 32 32 H 1.09004 * 109.47335 * 145.15439 * 11 10 9 33 33 H 1.09007 * 115.54794 * 29.41478 * 12 11 10 34 34 H 1.08998 * 117.49651 * 359.97438 * 13 12 11 35 35 H 1.08999 * 117.49880 * 145.01528 * 13 12 11 36 36 H 1.09005 * 117.49754 * 214.97345 * 14 12 11 37 37 H 1.08994 * 117.49965 * 0.02562 * 14 12 11 38 38 H 1.07998 * 127.29147 * 359.97305 * 18 17 15 39 39 H 1.07995 * 126.63551 * 359.97438 * 21 20 19 40 40 H 1.08002 * 126.46670 * 180.02562 * 22 21 20 41 41 H 1.08007 * 125.64827 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5672 -4.2650 -1.2596 12 6 1.6829 -5.4954 -1.4713 13 6 2.3690 -6.8627 -1.4969 14 6 1.8297 -6.2521 -2.7929 15 6 2.7436 -4.0370 1.1599 16 8 3.5865 -4.9131 1.1528 17 6 2.3122 -3.4375 2.4395 18 6 2.6917 -3.8613 3.7308 19 6 2.0459 -3.0175 4.5957 20 6 2.1116 -3.0482 6.0671 21 6 1.4636 -2.2015 6.9139 22 6 1.8100 -2.5928 8.2222 23 6 2.6431 -3.6462 8.1122 24 8 2.8194 -3.9219 6.8093 25 7 1.3320 -2.1409 3.8299 26 1 0.7760 -1.4248 4.1751 27 7 1.5013 -2.4079 2.5850 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.4229 -3.5676 -2.0847 32 1 3.6127 -4.5712 -1.2213 33 1 0.6872 -5.4401 -1.0309 34 1 3.4505 -6.8856 -1.3635 35 1 1.8247 -7.7070 -1.0738 36 1 0.9308 -6.6950 -3.2218 37 1 2.5567 -5.8736 -3.5114 38 1 3.3486 -4.6804 3.9839 39 1 0.8105 -1.3874 6.6363 40 1 1.4718 -2.1348 9.1399 41 1 3.0912 -4.1830 8.9353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:11 Heat of formation + Delta-G solvation = 95.326299 kcal Electronic energy + Delta-G solvation = -25835.370736 eV Core-core repulsion = 22106.355810 eV Total energy + Delta-G solvation = -3729.014926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.71720 -41.92262 -38.85870 -36.78767 -34.66944 -33.25543 -32.35165 -31.86722 -31.36986 -28.38677 -27.58623 -26.32394 -23.46454 -22.64343 -22.41331 -22.01951 -21.66097 -20.44343 -20.17555 -18.78883 -17.97474 -16.83726 -16.49391 -16.21571 -15.96804 -15.62851 -15.04357 -14.62941 -14.41109 -14.27679 -14.11293 -13.48671 -13.25514 -13.03670 -12.93651 -12.81228 -12.28484 -12.23903 -11.92142 -11.50741 -11.26706 -11.20129 -10.89707 -10.81044 -10.24092 -10.20301 -10.10630 -9.78396 -9.71552 -9.58219 -9.51584 -9.24273 -8.95279 -8.40035 -7.89296 -7.64419 -6.04033 -4.05618 1.11383 2.23159 2.34506 2.45207 2.98178 3.26498 3.33513 3.38328 3.44833 3.88365 4.12712 4.20759 4.42321 4.52287 4.81877 4.88027 4.99712 5.13697 5.27517 5.30887 5.35305 5.45778 5.60314 5.71969 5.74741 5.82549 5.88998 5.97232 6.02573 6.18869 6.19262 6.25914 6.33426 6.41348 6.62528 6.67070 6.89620 6.94818 7.21137 7.49552 7.73908 7.89109 8.24254 8.29925 8.42579 8.94573 9.07343 9.57156 11.03690 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.004868 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.151798 B = 5750.877127 C = 8147.513790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.229 3.771 10 N -0.581 5.581 11 C 0.151 3.849 12 C -0.160 4.160 13 C -0.173 4.173 14 C -0.181 4.181 15 C 0.601 3.399 16 O -0.564 6.564 17 C -0.014 4.014 18 C -0.143 4.143 19 C 0.044 3.956 20 C 0.074 3.926 21 C -0.207 4.207 22 C -0.207 4.207 23 C -0.039 4.039 24 O -0.162 6.162 25 N -0.372 5.372 26 H 0.445 0.555 27 N -0.155 5.155 28 H 0.260 0.740 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.922 -6.999 10.345 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.109 3.891 10 N -0.310 5.310 11 C 0.028 3.972 12 C -0.179 4.179 13 C -0.210 4.210 14 C -0.219 4.219 15 C 0.388 3.612 16 O -0.443 6.443 17 C -0.173 4.173 18 C -0.171 4.171 19 C -0.079 4.079 20 C 0.022 3.978 21 C -0.227 4.227 22 C -0.226 4.226 23 C -0.107 4.107 24 O -0.057 6.057 25 N -0.090 5.090 26 H 0.289 0.711 27 N 0.009 4.991 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.180 0.820 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.784 -6.826 9.554 11.768 hybrid contribution 0.390 1.192 0.898 1.542 sum 1.174 -5.634 10.452 11.932 Atomic orbital electron populations 1.69929 1.05738 1.26536 1.50914 1.24773 0.94664 0.98501 0.95311 0.86692 0.79929 0.83768 0.78177 1.20686 1.21325 1.20132 1.21333 0.93051 0.90438 1.50097 0.92774 1.19846 0.87744 0.82091 0.99393 1.48103 1.44373 1.33905 1.04639 1.20888 0.97588 0.92163 0.86589 1.22791 1.01120 0.93405 1.00627 1.22960 1.00734 0.96579 1.00721 1.22921 1.03041 1.04796 0.91126 1.16855 0.81015 0.81218 0.82160 1.90681 1.33575 1.32993 1.87023 1.21861 1.02779 0.97762 0.94910 1.21743 1.03190 1.01865 0.90283 1.18255 1.04094 0.98179 0.87374 1.18990 0.97552 0.92640 0.88637 1.21751 1.05473 1.03039 0.92446 1.21696 1.02732 0.99859 0.98313 1.24135 1.02962 1.00443 0.83200 1.84094 1.56503 1.47662 1.17406 1.43976 1.36166 1.25625 1.03238 0.71052 1.74661 1.14839 1.13613 0.95968 0.93025 0.94974 0.91495 0.89779 0.90845 0.87900 0.88664 0.89540 0.89219 0.88916 0.82050 0.83315 0.83153 0.77729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -13.43 8.38 -34.44 -0.29 -13.72 16 8 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.23 5.56 4.74 -5.19 -0.02 5.53 16 10 N -0.58 -12.73 2.48 -176.22 -0.44 -13.16 16 11 C 0.15 2.85 5.64 -4.05 -0.02 2.83 16 12 C -0.16 -2.64 5.98 -90.62 -0.54 -3.18 16 13 C -0.17 -2.53 10.18 -26.69 -0.27 -2.80 16 14 C -0.18 -2.42 10.25 -26.69 -0.27 -2.70 16 15 C 0.60 13.47 7.58 -12.37 -0.09 13.38 16 16 O -0.56 -13.10 16.55 5.30 0.09 -13.01 16 17 C -0.01 -0.30 6.78 -82.88 -0.56 -0.86 16 18 C -0.14 -2.60 10.77 -38.94 -0.42 -3.02 16 19 C 0.04 0.71 7.10 -82.52 -0.59 0.13 16 20 C 0.07 1.04 7.17 -36.64 -0.26 0.77 16 21 C -0.21 -2.43 10.85 -39.33 -0.43 -2.85 16 22 C -0.21 -2.04 10.88 -39.82 -0.43 -2.47 16 23 C -0.04 -0.38 12.08 29.50 0.36 -0.02 16 24 O -0.16 -2.14 10.68 4.44 0.05 -2.10 16 25 N -0.37 -6.27 6.90 33.25 0.23 -6.04 16 26 H 0.44 6.06 8.96 -190.45 -1.71 4.35 16 27 N -0.15 -3.23 7.99 33.36 0.27 -2.96 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.03 0.82 8.02 -51.93 -0.42 0.40 16 30 H 0.07 1.69 5.38 -51.93 -0.28 1.41 16 31 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 32 H 0.07 1.39 7.25 -51.93 -0.38 1.01 16 33 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 34 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.16 2.72 8.06 -52.49 -0.42 2.30 16 39 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.21 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -31.36 359.20 -9.17 -40.53 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.54 Total: 6.33 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.95 Total: -7.25 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.79 Total: -45.79 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.14 Total: -15.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.36 -9.17 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.853 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds