Wall clock time and date at job start Tue Mar 31 2020 10:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47095 * 269.99883 * 3 2 1 5 5 H 1.48500 * 109.47198 * 29.99963 * 3 2 1 6 6 H 1.48503 * 109.46982 * 149.99610 * 3 2 1 7 7 C 1.37885 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99903 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46875 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00235 * 263.34603 * 10 9 7 12 12 C 1.52999 * 109.47318 * 265.15628 * 11 10 9 13 13 C 1.53001 * 117.50161 * 243.74482 * 12 11 10 14 14 C 1.52999 * 117.49955 * 175.08182 * 12 11 10 15 15 C 1.34780 * 119.99798 * 83.34805 * 10 9 7 16 16 O 1.21572 * 119.99790 * 183.90739 * 15 10 9 17 17 C 1.47744 * 120.00509 * 3.89699 * 15 10 9 18 18 C 1.41110 * 126.30475 * 173.63194 * 17 15 10 19 19 C 1.37010 * 105.41941 * 180.23188 * 18 17 15 20 20 C 1.47324 * 126.63148 * 179.77833 * 19 18 17 21 21 C 1.36153 * 125.94694 * 179.97438 * 20 19 18 22 22 C 1.40878 * 106.72783 * 179.97438 * 21 20 19 23 23 C 1.34756 * 107.05831 * 0.02562 * 22 21 20 24 24 O 1.34331 * 108.70801 * 359.76221 * 23 22 21 25 25 N 1.36544 * 106.72870 * 359.65016 * 19 18 17 26 26 H 0.97007 * 125.02760 * 180.11951 * 25 19 18 27 27 N 1.28448 * 109.94824 * 0.37285 * 25 19 18 28 28 H 0.97000 * 120.00062 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47188 * 59.99598 * 9 7 2 30 30 H 1.09000 * 109.47048 * 299.99569 * 9 7 2 31 31 H 1.09002 * 109.47096 * 25.15601 * 11 10 9 32 32 H 1.09004 * 109.47335 * 145.15439 * 11 10 9 33 33 H 1.09007 * 115.54794 * 29.41478 * 12 11 10 34 34 H 1.08998 * 117.49651 * 359.97438 * 13 12 11 35 35 H 1.08999 * 117.49880 * 145.01528 * 13 12 11 36 36 H 1.09005 * 117.49754 * 214.97345 * 14 12 11 37 37 H 1.08994 * 117.49965 * 0.02562 * 14 12 11 38 38 H 1.07998 * 127.29147 * 359.97305 * 18 17 15 39 39 H 1.07995 * 126.63551 * 359.97438 * 21 20 19 40 40 H 1.08002 * 126.46670 * 180.02562 * 22 21 20 41 41 H 1.08007 * 125.64827 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5672 -4.2650 -1.2596 12 6 1.6829 -5.4954 -1.4713 13 6 2.3690 -6.8627 -1.4969 14 6 1.8297 -6.2521 -2.7929 15 6 2.7436 -4.0370 1.1599 16 8 3.5865 -4.9131 1.1528 17 6 2.3122 -3.4375 2.4395 18 6 2.6917 -3.8613 3.7308 19 6 2.0459 -3.0175 4.5957 20 6 2.1116 -3.0482 6.0671 21 6 1.4636 -2.2015 6.9139 22 6 1.8100 -2.5928 8.2222 23 6 2.6431 -3.6462 8.1122 24 8 2.8194 -3.9219 6.8093 25 7 1.3320 -2.1409 3.8299 26 1 0.7760 -1.4248 4.1751 27 7 1.5013 -2.4079 2.5850 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.4229 -3.5676 -2.0847 32 1 3.6127 -4.5712 -1.2213 33 1 0.6872 -5.4401 -1.0309 34 1 3.4505 -6.8856 -1.3635 35 1 1.8247 -7.7070 -1.0738 36 1 0.9308 -6.6950 -3.2218 37 1 2.5567 -5.8736 -3.5114 38 1 3.3486 -4.6804 3.9839 39 1 0.8105 -1.3874 6.6363 40 1 1.4718 -2.1348 9.1399 41 1 3.0912 -4.1830 8.9353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:10 Heat of formation + Delta-G solvation = 77.301810 kcal Electronic energy + Delta-G solvation = -25836.152337 eV Core-core repulsion = 22106.355810 eV Total energy + Delta-G solvation = -3729.796527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.79909 -43.17477 -40.52583 -38.14912 -36.43165 -34.34240 -34.20763 -33.04163 -32.79497 -29.76491 -29.12013 -27.99070 -25.22669 -24.22904 -23.60984 -23.15066 -22.68892 -21.58563 -21.52083 -20.04196 -19.48746 -18.49477 -18.19228 -17.31313 -17.23021 -17.14016 -16.53190 -16.27965 -15.89309 -15.65356 -15.45306 -14.85444 -14.71081 -14.55021 -14.18108 -13.84365 -13.69499 -13.62591 -13.39962 -13.20298 -12.85022 -12.65734 -12.58737 -12.31516 -12.12938 -11.69205 -11.45617 -11.27955 -11.22141 -11.01360 -10.77315 -10.73732 -10.45438 -10.39161 -9.42644 -9.00047 -8.08325 -6.16277 0.03092 0.70879 1.36569 1.38131 1.38538 1.41154 1.49602 1.87426 2.13770 2.40312 2.47148 2.55408 2.97134 3.23227 3.42796 3.52222 3.87924 3.96952 4.00325 4.05712 4.14131 4.24307 4.32683 4.42736 4.57419 4.71773 4.79460 4.84573 4.86683 4.93453 4.99055 5.04118 5.04353 5.20489 5.30243 5.31696 5.46682 5.53566 5.75660 5.88558 6.01812 6.12951 6.22246 6.54172 6.80914 6.99572 7.31508 7.50199 8.98567 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.004868 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.151798 B = 5750.877127 C = 8147.513790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.035 3.965 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.036 0.964 9 C 0.246 3.754 10 N -0.584 5.584 11 C 0.149 3.851 12 C -0.185 4.185 13 C -0.171 4.171 14 C -0.152 4.152 15 C 0.594 3.406 16 O -0.580 6.580 17 C -0.037 4.037 18 C -0.167 4.167 19 C 0.076 3.924 20 C 0.025 3.975 21 C -0.187 4.187 22 C -0.218 4.218 23 C -0.021 4.021 24 O -0.181 6.181 25 N -0.362 5.362 26 H 0.457 0.543 27 N -0.193 5.193 28 H 0.263 0.737 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.182 0.818 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -6.796 12.239 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.054 0.946 9 C 0.125 3.875 10 N -0.313 5.313 11 C 0.027 3.973 12 C -0.204 4.204 13 C -0.208 4.208 14 C -0.190 4.190 15 C 0.381 3.619 16 O -0.461 6.461 17 C -0.195 4.195 18 C -0.195 4.195 19 C -0.048 4.048 20 C -0.026 4.026 21 C -0.208 4.208 22 C -0.236 4.236 23 C -0.089 4.089 24 O -0.077 6.077 25 N -0.081 5.081 26 H 0.304 0.696 27 N -0.029 5.029 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.185 0.815 39 H 0.183 0.817 40 H 0.199 0.801 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.731 -6.613 11.423 13.219 hybrid contribution 0.404 1.112 0.544 1.302 sum 1.135 -5.501 11.967 13.219 Atomic orbital electron populations 1.70006 1.06669 1.27338 1.51348 1.25318 0.95330 1.00948 0.94938 0.85840 0.78507 0.80664 0.78220 1.20185 1.20329 1.20857 1.21355 0.92137 0.91651 1.50312 0.94595 1.19481 0.87687 0.82225 0.98092 1.48113 1.43903 1.33569 1.05721 1.21002 0.97930 0.93076 0.85303 1.22604 1.00249 0.93406 1.04185 1.22999 1.00415 0.95555 1.01783 1.23044 1.03762 1.02105 0.90051 1.17137 0.80808 0.81138 0.82787 1.90640 1.34280 1.33751 1.87403 1.21832 1.03873 0.98579 0.95217 1.21818 1.04817 1.03255 0.89614 1.18410 1.01523 0.96133 0.88715 1.18791 1.00988 0.95247 0.87597 1.22179 1.03571 1.01924 0.93111 1.22115 1.02863 1.00112 0.98527 1.25149 1.01326 0.99821 0.82602 1.84087 1.56780 1.47925 1.18869 1.43896 1.35935 1.25811 1.02433 0.69577 1.74515 1.16048 1.14455 0.97923 0.92755 0.96625 0.92296 0.89944 0.91235 0.89228 0.89221 0.88429 0.87150 0.87627 0.81509 0.81671 0.80083 0.73512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.34 13.29 21.45 0.28 -50.06 16 2 C 0.03 1.85 5.46 84.66 0.46 2.31 16 3 Si 0.94 43.08 29.54 68.60 2.03 45.10 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 7 C -0.52 -27.96 8.38 25.60 0.21 -27.74 16 8 H 0.04 2.04 7.81 -2.91 -0.02 2.02 16 9 C 0.25 12.46 4.74 85.63 0.41 12.87 16 10 N -0.58 -26.86 2.48 -829.69 -2.06 -28.92 16 11 C 0.15 5.85 5.64 86.38 0.49 6.34 16 12 C -0.19 -6.20 5.98 -10.79 -0.06 -6.26 16 13 C -0.17 -4.90 10.18 30.62 0.31 -4.59 16 14 C -0.15 -3.85 10.25 30.62 0.31 -3.53 16 15 C 0.59 27.94 7.58 86.76 0.66 28.60 16 16 O -0.58 -28.11 16.55 -3.94 -0.07 -28.18 16 17 C -0.04 -1.62 6.78 42.36 0.29 -1.33 16 18 C -0.17 -6.32 10.77 22.69 0.24 -6.07 16 19 C 0.08 2.50 7.10 40.51 0.29 2.79 16 20 C 0.03 0.67 7.17 24.18 0.17 0.85 16 21 C -0.19 -3.92 10.85 22.43 0.24 -3.68 16 22 C -0.22 -3.45 10.88 22.12 0.24 -3.21 16 23 C -0.02 -0.33 12.08 67.02 0.81 0.47 16 24 O -0.18 -4.48 10.68 -7.04 -0.08 -4.55 16 25 N -0.36 -12.37 6.90 -48.73 -0.34 -12.70 16 26 H 0.46 12.42 8.96 -219.99 -1.97 10.44 16 27 N -0.19 -8.35 7.99 -48.38 -0.39 -8.74 16 28 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 29 H 0.02 0.83 8.02 -2.39 -0.02 0.82 16 30 H 0.06 3.13 5.38 -2.39 -0.01 3.11 16 31 H 0.08 3.16 8.04 -2.39 -0.02 3.14 16 32 H 0.07 2.73 7.25 -2.38 -0.02 2.71 16 33 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 34 H 0.09 2.68 8.03 -2.39 -0.02 2.66 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.17 5.89 8.06 -2.91 -0.02 5.87 16 39 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.25 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -69.38 359.20 3.56 -65.82 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.90 Total: 24.42 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 5.08 Total: -2.19 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -2.50 Total: -100.42 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.14 Total: -32.73 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.38 3.56 -65.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.120 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds