Wall clock time and date at job start Tue Mar 31 2020 11:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40047 * 119.96120 * 2 1 4 4 C 1.36452 * 119.52585 * 180.02562 * 3 2 1 5 5 C 1.40472 * 119.52832 * 0.04121 * 4 3 2 6 6 N 1.33581 * 119.24495 * 179.97438 * 5 4 3 7 7 C 1.31681 * 121.70230 * 179.66095 * 6 5 4 8 8 C 1.40169 * 119.80905 * 0.60197 * 7 6 5 9 9 C 1.46741 * 120.74828 * 179.71338 * 8 7 6 10 10 O 1.21698 * 119.99963 * 293.36549 * 9 8 7 11 11 N 1.34776 * 119.99885 * 113.36947 * 9 8 7 12 12 C 1.46497 * 120.00297 * 5.24986 * 11 9 8 13 13 C 1.46507 * 119.99966 * 185.24593 * 11 9 8 14 14 H 1.08999 * 109.46688 * 0.02562 * 13 11 9 15 15 C 1.52998 * 109.46583 * 120.00124 * 13 11 9 16 16 C 1.50691 * 109.47139 * 240.00162 * 13 11 9 17 17 H 1.08000 * 120.00489 * 359.97438 * 16 13 11 18 18 C 1.37883 * 120.00083 * 180.02562 * 16 13 11 19 19 N 1.31518 * 119.99731 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00149 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47324 * 89.99887 * 20 18 16 22 22 H 1.48505 * 109.47186 * 209.99670 * 20 18 16 23 23 H 1.48499 * 109.47241 * 329.99394 * 20 18 16 24 24 C 1.41580 * 118.49361 * 359.43786 * 8 7 6 25 25 O 1.21856 * 120.61299 * 180.23169 * 24 8 7 26 26 N 1.35065 * 118.77851 * 0.25278 * 24 8 7 27 27 C 1.35314 * 119.96444 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46912 * 269.97588 * 1 2 3 29 29 H 1.09000 * 109.47232 * 29.97427 * 1 2 3 30 30 H 1.09002 * 109.46976 * 149.97944 * 1 2 3 31 31 H 1.08008 * 120.24146 * 0.04385 * 3 2 1 32 32 H 1.08005 * 120.23856 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.09076 * 180.29032 * 7 6 5 34 34 H 1.08997 * 109.47272 * 121.34728 * 12 11 9 35 35 H 1.09005 * 109.46932 * 1.35057 * 12 11 9 36 36 H 1.09000 * 109.47232 * 241.35172 * 12 11 9 37 37 H 1.09004 * 109.46938 * 179.97438 * 15 13 11 38 38 H 1.09005 * 109.47255 * 299.99824 * 15 13 11 39 39 H 1.08999 * 109.47653 * 60.00537 * 15 13 11 40 40 H 0.96992 * 119.99837 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.62011 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.2133 0.0000 4 6 3.5709 1.2029 -0.0005 5 6 4.2539 -0.0245 -0.0019 6 7 5.5897 -0.0281 -0.0030 7 6 6.2788 -1.1502 0.0023 8 6 5.6070 -2.3804 -0.0036 9 6 6.3542 -3.6433 -0.0042 10 8 7.0275 -3.9515 -0.9700 11 7 6.2949 -4.4619 1.0649 12 6 5.3961 -4.1485 2.1785 13 6 7.1292 -5.6653 1.1133 14 1 7.7265 -5.7300 0.2038 15 6 8.0566 -5.5942 2.3281 16 6 6.2484 -6.8830 1.2241 17 1 5.1746 -6.7718 1.2558 18 6 6.8135 -8.1392 1.2861 19 7 8.1211 -8.2746 1.2480 20 14 5.7217 -9.6487 1.4228 21 1 5.3833 -10.1397 0.0628 22 1 6.4399 -10.7131 2.1689 23 1 4.4740 -9.2934 2.1456 24 6 4.1912 -2.3769 -0.0029 25 8 3.5680 -3.4240 -0.0036 26 7 3.5439 -1.1914 -0.0019 27 6 2.1829 -1.1723 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6697 2.1506 0.0007 32 1 4.1219 2.1319 -0.0001 33 1 7.3584 -1.1227 0.0060 34 1 4.6955 -4.9710 2.3225 35 1 4.8438 -3.2360 1.9539 36 1 5.9802 -4.0053 3.0876 37 1 8.6770 -6.4898 2.3644 38 1 8.6936 -4.7134 2.2478 39 1 7.4596 -5.5293 3.2377 40 1 8.5186 -9.1583 1.2912 41 1 1.6361 -2.1037 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:39 Heat of formation + Delta-G solvation = 18.442976 kcal Electronic energy + Delta-G solvation = -26339.597838 eV Core-core repulsion = 22607.249000 eV Total energy + Delta-G solvation = -3732.348838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.87878 -39.40771 -38.09244 -37.57713 -35.17044 -34.53668 -33.00035 -32.65181 -30.58992 -28.99847 -27.97634 -26.12564 -25.59189 -25.09840 -23.81014 -23.43822 -21.75153 -19.52887 -18.74314 -18.10782 -17.88070 -16.96018 -16.42457 -15.88594 -15.85875 -15.47346 -15.26202 -14.81090 -14.38060 -14.11905 -14.02519 -13.75987 -13.43102 -13.10980 -12.91970 -12.61830 -12.43052 -12.30403 -12.20652 -12.08754 -11.51084 -11.36610 -10.96634 -10.85965 -10.74805 -10.66810 -10.59439 -10.19866 -10.13971 -10.05356 -9.58042 -9.10070 -8.95418 -8.33263 -7.81555 -7.44622 -5.97334 -4.03680 -0.21207 0.21883 1.80730 1.84944 2.28737 3.32226 3.34942 3.40658 3.44581 3.59968 3.73675 3.90055 4.06520 4.16817 4.26721 4.36530 4.50466 4.62211 4.96081 5.05288 5.09009 5.19269 5.30914 5.33875 5.41268 5.47124 5.58034 5.66852 5.78658 5.83417 6.18395 6.20898 6.21792 6.51960 6.82658 6.90609 7.13861 7.50170 7.53324 7.59369 7.64062 7.82157 8.11639 8.30250 8.62800 8.94110 9.14515 9.61836 11.08214 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.003685 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.877637 B = 7597.053682 C = 8497.760357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.140 4.140 3 C -0.031 4.031 4 C -0.133 4.133 5 C 0.385 3.615 6 N -0.542 5.542 7 C 0.221 3.779 8 C -0.320 4.320 9 C 0.578 3.422 10 O -0.547 6.547 11 N -0.575 5.575 12 C 0.099 3.901 13 C 0.258 3.742 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.519 3.481 25 O -0.500 6.500 26 N -0.423 5.423 27 C 0.100 3.900 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.177 0.823 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.011 0.989 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 23.125 0.942 27.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.143 4.143 3 C -0.055 4.055 4 C -0.153 4.153 5 C 0.144 3.856 6 N -0.266 5.266 7 C 0.070 3.930 8 C -0.332 4.332 9 C 0.363 3.637 10 O -0.426 6.426 11 N -0.305 5.305 12 C -0.046 4.046 13 C 0.158 3.842 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.558 4.558 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 C 0.322 3.678 25 O -0.376 6.376 26 N -0.125 5.125 27 C -0.023 4.023 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.170 0.830 32 H 0.185 0.815 33 H 0.194 0.806 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.030 0.970 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.711 22.635 0.469 26.468 hybrid contribution -0.975 -1.586 0.164 1.869 sum -14.686 21.049 0.634 25.674 Atomic orbital electron populations 1.20706 0.88324 1.03884 1.03305 1.19680 0.98078 0.91433 1.05081 1.21514 0.93672 0.98704 0.91566 1.20992 0.93969 0.95777 1.04559 1.20701 0.88972 0.85597 0.90348 1.68850 1.01322 1.29016 1.27367 1.23070 1.00849 0.85306 0.83737 1.21720 0.91770 0.97836 1.21847 1.17106 0.81104 0.82152 0.83315 1.90769 1.43797 1.74592 1.33470 1.48087 1.40593 1.24658 1.17137 1.21457 0.93644 0.99836 0.89614 1.18964 0.88955 0.79705 0.96579 0.91804 1.22083 0.99408 1.00875 0.98095 1.21343 0.93353 0.90501 1.50647 0.92146 1.24882 0.95097 0.98833 0.95034 1.69880 1.09293 1.23289 1.50474 0.86486 0.80407 0.82295 0.78154 1.20630 1.21177 1.19955 1.17200 0.88790 0.81887 0.79903 1.91028 1.68225 1.28126 1.50171 1.44466 1.07936 1.10054 1.50014 1.22265 0.82424 1.01699 0.95949 0.90326 0.90490 0.90709 0.82982 0.81461 0.80581 0.91563 0.93745 0.93118 0.88694 0.96953 0.95140 0.92800 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.35 10.01 36.01 0.36 0.01 16 2 C -0.14 -0.86 5.85 -104.99 -0.61 -1.47 16 3 C -0.03 -0.15 9.75 -39.55 -0.39 -0.53 16 4 C -0.13 -0.94 9.95 -39.38 -0.39 -1.33 16 5 C 0.39 4.48 7.32 -155.79 -1.14 3.34 16 6 N -0.54 -7.21 10.28 -11.95 -0.12 -7.33 16 7 C 0.22 3.39 11.03 -16.89 -0.19 3.21 16 8 C -0.32 -6.09 4.54 -104.46 -0.47 -6.57 16 9 C 0.58 13.84 6.73 -12.83 -0.09 13.76 16 10 O -0.55 -15.03 16.45 5.19 0.09 -14.95 16 11 N -0.58 -13.97 2.75 -176.78 -0.49 -14.46 16 12 C 0.10 2.02 9.08 59.85 0.54 2.56 16 13 C 0.26 7.11 2.63 -69.08 -0.18 6.92 16 14 H 0.06 2.00 6.91 -51.93 -0.36 1.64 16 15 C -0.15 -3.67 8.88 37.16 0.33 -3.34 16 16 C -0.52 -15.18 8.29 -34.44 -0.29 -15.46 16 17 H 0.06 1.79 7.06 -52.49 -0.37 1.42 16 18 C 0.06 1.82 5.30 -17.82 -0.09 1.73 16 19 N -0.89 -26.27 11.32 55.43 0.63 -25.64 16 20 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.52 9.24 5.89 -14.86 -0.09 9.16 16 25 O -0.50 -10.38 15.06 5.05 0.08 -10.31 16 26 N -0.42 -5.56 2.76 -64.90 -0.18 -5.74 16 27 C 0.10 0.98 9.70 -16.69 -0.16 0.82 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.14 8.09 -51.93 -0.42 -0.28 16 30 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.15 0.18 8.06 -52.48 -0.42 -0.24 16 32 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.18 2.40 8.06 -52.48 -0.42 1.98 16 34 H 0.07 1.43 7.18 -51.93 -0.37 1.06 16 35 H 0.04 0.82 4.73 -51.93 -0.25 0.57 16 36 H 0.05 0.94 7.23 -51.93 -0.38 0.57 16 37 H 0.09 2.58 6.07 -51.93 -0.32 2.27 16 38 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.18 1.74 7.32 -52.49 -0.38 1.36 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -37.49 343.04 -7.59 -45.08 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.88 Total: -1.89 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -2.86 Total: 12.79 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.16 Total: -53.17 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.16 Total: -25.25 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.49 -7.59 -45.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.520 kcal (2) G-P(sol) polarization free energy of solvation -37.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds