Wall clock time and date at job start Tue Mar 31 2020 11:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40047 * 119.96120 * 2 1 4 4 C 1.36452 * 119.52585 * 180.02562 * 3 2 1 5 5 C 1.40472 * 119.52832 * 0.04121 * 4 3 2 6 6 N 1.33581 * 119.24495 * 179.97438 * 5 4 3 7 7 C 1.31681 * 121.70230 * 179.66095 * 6 5 4 8 8 C 1.40169 * 119.80905 * 0.60197 * 7 6 5 9 9 C 1.46741 * 120.74828 * 179.71338 * 8 7 6 10 10 O 1.21698 * 119.99963 * 293.36549 * 9 8 7 11 11 N 1.34776 * 119.99885 * 113.36947 * 9 8 7 12 12 C 1.46497 * 120.00297 * 5.24986 * 11 9 8 13 13 C 1.46507 * 119.99966 * 185.24593 * 11 9 8 14 14 H 1.08999 * 109.46688 * 0.02562 * 13 11 9 15 15 C 1.52998 * 109.46583 * 120.00124 * 13 11 9 16 16 C 1.50691 * 109.47139 * 240.00162 * 13 11 9 17 17 H 1.08000 * 120.00489 * 359.97438 * 16 13 11 18 18 C 1.37883 * 120.00083 * 180.02562 * 16 13 11 19 19 N 1.31518 * 119.99731 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00149 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47324 * 89.99887 * 20 18 16 22 22 H 1.48505 * 109.47186 * 209.99670 * 20 18 16 23 23 H 1.48499 * 109.47241 * 329.99394 * 20 18 16 24 24 C 1.41580 * 118.49361 * 359.43786 * 8 7 6 25 25 O 1.21856 * 120.61299 * 180.23169 * 24 8 7 26 26 N 1.35065 * 118.77851 * 0.25278 * 24 8 7 27 27 C 1.35314 * 119.96444 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46912 * 269.97588 * 1 2 3 29 29 H 1.09000 * 109.47232 * 29.97427 * 1 2 3 30 30 H 1.09002 * 109.46976 * 149.97944 * 1 2 3 31 31 H 1.08008 * 120.24146 * 0.04385 * 3 2 1 32 32 H 1.08005 * 120.23856 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.09076 * 180.29032 * 7 6 5 34 34 H 1.08997 * 109.47272 * 121.34728 * 12 11 9 35 35 H 1.09005 * 109.46932 * 1.35057 * 12 11 9 36 36 H 1.09000 * 109.47232 * 241.35172 * 12 11 9 37 37 H 1.09004 * 109.46938 * 179.97438 * 15 13 11 38 38 H 1.09005 * 109.47255 * 299.99824 * 15 13 11 39 39 H 1.08999 * 109.47653 * 60.00537 * 15 13 11 40 40 H 0.96992 * 119.99837 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.62011 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.2133 0.0000 4 6 3.5709 1.2029 -0.0005 5 6 4.2539 -0.0245 -0.0019 6 7 5.5897 -0.0281 -0.0030 7 6 6.2788 -1.1502 0.0023 8 6 5.6070 -2.3804 -0.0036 9 6 6.3542 -3.6433 -0.0042 10 8 7.0275 -3.9515 -0.9700 11 7 6.2949 -4.4619 1.0649 12 6 5.3961 -4.1485 2.1785 13 6 7.1292 -5.6653 1.1133 14 1 7.7265 -5.7300 0.2038 15 6 8.0566 -5.5942 2.3281 16 6 6.2484 -6.8830 1.2241 17 1 5.1746 -6.7718 1.2558 18 6 6.8135 -8.1392 1.2861 19 7 8.1211 -8.2746 1.2480 20 14 5.7217 -9.6487 1.4228 21 1 5.3833 -10.1397 0.0628 22 1 6.4399 -10.7131 2.1689 23 1 4.4740 -9.2934 2.1456 24 6 4.1912 -2.3769 -0.0029 25 8 3.5680 -3.4240 -0.0036 26 7 3.5439 -1.1914 -0.0019 27 6 2.1829 -1.1723 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6697 2.1506 0.0007 32 1 4.1219 2.1319 -0.0001 33 1 7.3584 -1.1227 0.0060 34 1 4.6955 -4.9710 2.3225 35 1 4.8438 -3.2360 1.9539 36 1 5.9802 -4.0053 3.0876 37 1 8.6770 -6.4898 2.3644 38 1 8.6936 -4.7134 2.2478 39 1 7.4596 -5.5293 3.2377 40 1 8.5186 -9.1583 1.2912 41 1 1.6361 -2.1037 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:38 Heat of formation + Delta-G solvation = -7.679660 kcal Electronic energy + Delta-G solvation = -26340.730600 eV Core-core repulsion = 22607.249000 eV Total energy + Delta-G solvation = -3733.481600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.90334 -40.91859 -39.46659 -38.60981 -37.15587 -35.48444 -34.81890 -33.72839 -32.02755 -30.70271 -28.65855 -27.78917 -27.36042 -26.68822 -24.77521 -24.22212 -23.49219 -21.09068 -19.84676 -19.45080 -18.90414 -18.56243 -18.14973 -17.45524 -17.26997 -16.83674 -16.32689 -16.07738 -15.82744 -15.46654 -15.08729 -14.96257 -14.70066 -14.44349 -14.24492 -13.99959 -13.58115 -13.43613 -13.33604 -13.27250 -13.01968 -12.94000 -12.75854 -12.71266 -12.65177 -12.24088 -12.15603 -11.91379 -11.54270 -11.39041 -11.24654 -10.82788 -10.57200 -10.42657 -9.42163 -8.90556 -8.18448 -6.34827 -1.10819 -0.60574 0.73155 0.81936 1.34963 1.37815 1.41652 1.48543 1.78384 2.27249 2.43191 2.56546 2.79997 3.04202 3.08093 3.32599 3.65152 3.66633 3.76338 3.88440 4.16254 4.20843 4.36847 4.53498 4.64273 4.69574 4.76403 4.79839 4.80847 4.82826 4.87458 4.87874 4.99528 5.08839 5.21678 5.28558 5.41961 5.46458 5.55081 5.61712 5.99345 6.12328 6.38311 6.45732 6.70455 6.72075 7.22513 7.39862 8.86093 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.003685 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.877637 B = 7597.053682 C = 8497.760357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.005 3.995 4 C -0.130 4.130 5 C 0.372 3.628 6 N -0.547 5.547 7 C 0.253 3.747 8 C -0.384 4.384 9 C 0.576 3.424 10 O -0.602 6.602 11 N -0.584 5.584 12 C 0.107 3.893 13 C 0.261 3.739 14 H 0.012 0.988 15 C -0.129 4.129 16 C -0.543 4.543 17 H 0.048 0.952 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.966 3.034 21 H -0.282 1.282 22 H -0.270 1.270 23 H -0.267 1.267 24 C 0.519 3.481 25 O -0.552 6.552 26 N -0.418 5.418 27 C 0.057 3.943 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.212 0.788 32 H 0.201 0.799 33 H 0.186 0.814 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.027 0.973 39 H 0.045 0.955 40 H 0.267 0.733 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 27.280 1.936 32.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.019 4.019 4 C -0.150 4.150 5 C 0.136 3.864 6 N -0.271 5.271 7 C 0.097 3.903 8 C -0.396 4.396 9 C 0.364 3.636 10 O -0.485 6.485 11 N -0.313 5.313 12 C -0.036 4.036 13 C 0.159 3.841 14 H 0.030 0.970 15 C -0.188 4.188 16 C -0.581 4.581 17 H 0.066 0.934 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.790 3.210 21 H -0.208 1.208 22 H -0.194 1.194 23 H -0.192 1.192 24 C 0.324 3.676 25 O -0.432 6.432 26 N -0.116 5.116 27 C -0.066 4.066 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.229 0.771 32 H 0.218 0.782 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.226 26.880 1.493 31.961 hybrid contribution -0.199 -2.500 -0.201 2.516 sum -17.425 24.380 1.291 29.995 Atomic orbital electron populations 1.20916 0.85542 1.05390 1.04718 1.20279 0.99765 0.90475 0.99696 1.22240 0.92745 1.00165 0.86716 1.21520 0.95105 0.94608 1.03751 1.21575 0.88881 0.86487 0.89481 1.68926 1.02338 1.27300 1.28537 1.23157 1.01378 0.84678 0.81066 1.21071 0.92480 0.96277 1.29737 1.17801 0.80372 0.83405 0.82003 1.90695 1.46401 1.76284 1.35154 1.48096 1.40768 1.23949 1.18486 1.21484 0.93100 0.99963 0.89090 1.18625 0.89227 0.81084 0.95147 0.97023 1.21844 0.98903 1.00479 0.97547 1.21509 0.92908 0.91906 1.51798 0.93423 1.25716 0.96565 1.01667 0.94274 1.70001 1.10718 1.24246 1.50296 0.85450 0.78850 0.78574 0.78103 1.20783 1.19433 1.19184 1.16935 0.88419 0.82609 0.79602 1.90972 1.69076 1.30073 1.53114 1.44213 1.09244 1.09088 1.49103 1.22579 0.81005 1.03426 0.99577 0.88709 0.87311 0.91009 0.77133 0.78230 0.79700 0.93333 0.91840 0.91126 0.90819 0.95406 0.93630 0.92371 0.81016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.12 10.01 71.24 0.71 0.59 16 2 C -0.10 -0.73 5.85 -20.10 -0.12 -0.85 16 3 C 0.00 0.01 9.75 22.29 0.22 0.23 16 4 C -0.13 -1.14 9.95 22.40 0.22 -0.92 16 5 C 0.37 7.84 7.32 133.84 0.98 8.82 16 6 N -0.55 -13.91 10.28 -191.72 -1.97 -15.89 16 7 C 0.25 8.03 11.03 85.18 0.94 8.97 16 8 C -0.38 -15.59 4.54 -19.76 -0.09 -15.68 16 9 C 0.58 29.96 6.73 86.47 0.58 30.55 16 10 O -0.60 -36.31 16.45 -4.34 -0.07 -36.38 16 11 N -0.58 -30.45 2.75 -831.44 -2.29 -32.74 16 12 C 0.11 4.60 9.08 127.77 1.16 5.76 16 13 C 0.26 15.37 2.63 44.24 0.12 15.49 16 14 H 0.01 0.81 6.91 -2.39 -0.02 0.79 16 15 C -0.13 -6.78 8.88 71.98 0.64 -6.14 16 16 C -0.54 -33.46 8.29 25.60 0.21 -33.24 16 17 H 0.05 2.99 7.06 -2.91 -0.02 2.96 16 18 C 0.02 1.04 5.30 84.66 0.45 1.49 16 19 N -0.91 -55.84 11.32 21.45 0.24 -55.60 16 20 Si 0.97 46.93 29.54 68.60 2.03 48.95 16 21 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 C 0.52 19.56 5.89 85.02 0.50 20.06 16 25 O -0.55 -24.79 15.06 -4.85 -0.07 -24.86 16 26 N -0.42 -10.82 2.76 -477.23 -1.32 -12.14 16 27 C 0.06 1.03 9.70 83.35 0.81 1.84 16 28 H 0.09 -0.04 8.14 -2.39 -0.02 -0.05 16 29 H 0.11 -0.43 8.09 -2.39 -0.02 -0.45 16 30 H 0.07 0.22 8.08 -2.39 -0.02 0.20 16 31 H 0.21 -1.63 8.06 -2.91 -0.02 -1.66 16 32 H 0.20 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.19 5.27 8.06 -2.91 -0.02 5.24 16 34 H 0.05 2.23 7.18 -2.39 -0.02 2.21 16 35 H 0.06 2.48 4.73 -2.38 -0.01 2.47 16 36 H 0.07 2.69 7.23 -2.39 -0.02 2.67 16 37 H 0.07 4.18 6.07 -2.38 -0.01 4.17 16 38 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.04 2.19 7.17 -2.39 -0.02 2.17 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.17 3.40 7.32 -2.91 -0.02 3.38 16 Total: -1.00 -92.66 343.04 4.95 -87.71 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.07 Total: 3.98 kcal Atomic # 6 Polarization: 29.63 SS G_CDS: 7.33 Total: 36.97 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.33 Total: -116.36 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -0.14 Total: -61.25 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -92.66 4.95 -87.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.028 kcal (2) G-P(sol) polarization free energy of solvation -92.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds