Wall clock time and date at job start Tue Mar 31 2020 10:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48500 * 109.47098 * 240.00147 * 3 2 1 5 5 H 1.48500 * 109.46971 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47112 * 120.00148 * 3 2 1 7 7 C 1.38811 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99807 * 163.06874 * 7 2 1 9 9 N 1.36935 * 119.99813 * 343.07467 * 7 2 1 10 10 C 1.46929 * 120.63106 * 331.83452 * 9 7 2 11 11 C 1.53192 * 108.77323 * 233.62636 * 10 9 7 12 12 C 1.53035 * 109.31728 * 305.36643 * 11 10 9 13 13 N 1.46499 * 109.46259 * 181.38062 * 12 11 10 14 14 C 1.39007 * 119.99897 * 154.96727 * 13 12 11 15 15 C 1.39136 * 119.70550 * 0.28490 * 14 13 12 16 16 C 1.38296 * 119.09578 * 180.22381 * 15 14 13 17 17 C 1.38890 * 118.50431 * 359.50346 * 16 15 14 18 18 C 1.38025 * 119.32830 * 0.25216 * 17 16 15 19 19 C 1.50701 * 119.57080 * 180.02562 * 18 17 16 20 20 F 1.39908 * 109.46954 * 89.99700 * 19 18 17 21 21 F 1.39895 * 109.47429 * 210.00091 * 19 18 17 22 22 F 1.39903 * 109.47046 * 330.00674 * 19 18 17 23 23 N 1.31971 * 120.85682 * 0.02562 * 18 17 16 24 24 C 1.53044 * 109.52838 * 61.36984 * 12 11 10 25 25 C 1.46928 * 120.63022 * 151.85329 * 9 7 2 26 26 H 0.97001 * 119.99594 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58602 * 113.84438 * 10 9 7 28 28 H 1.08991 * 109.70143 * 353.48662 * 10 9 7 29 29 H 1.08992 * 109.49667 * 185.40827 * 11 10 9 30 30 H 1.09010 * 109.51921 * 65.33668 * 11 10 9 31 31 H 1.08996 * 109.45673 * 301.35650 * 12 11 10 32 32 H 0.97001 * 120.00164 * 334.98068 * 13 12 11 33 33 H 1.07999 * 120.45224 * 359.97438 * 15 14 13 34 34 H 1.07993 * 120.75059 * 179.77955 * 16 15 14 35 35 H 1.07995 * 120.33726 * 180.27479 * 17 16 15 36 36 H 1.09005 * 109.49537 * 58.58072 * 24 12 11 37 37 H 1.09003 * 109.50156 * 178.67721 * 24 12 11 38 38 H 1.08999 * 109.59031 * 246.15860 * 25 9 7 39 39 H 1.09004 * 109.58926 * 6.44055 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2718 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3398 1.2682 11 6 0.4983 -3.3182 2.4151 12 6 0.8133 -4.7000 1.8378 13 7 1.0416 -5.6461 2.9328 14 6 0.8317 -7.0055 2.7320 15 6 0.4106 -7.4615 1.4868 16 6 0.2012 -8.8160 1.3022 17 6 0.4308 -9.6738 2.3702 18 6 0.8530 -9.1531 3.5768 19 6 1.1044 -10.0789 4.7391 20 9 2.4378 -10.5020 4.7183 21 9 0.8480 -9.4036 5.9371 22 9 0.2609 -11.1907 4.6406 23 7 1.0393 -7.8552 3.7259 24 6 2.0687 -4.6164 0.9664 25 6 1.8144 -3.6529 -0.1972 26 1 -0.4849 0.8401 0.0004 27 1 -0.6768 -2.6411 0.7373 28 1 0.0966 -1.3344 1.6685 29 1 -0.3821 -3.3831 3.0544 30 1 1.3478 -2.9661 3.0005 31 1 -0.0267 -5.0408 1.2327 32 1 1.3390 -5.3239 3.7981 33 1 0.2455 -6.7668 0.6765 34 1 -0.1291 -9.1987 0.3479 35 1 0.2810 -10.7373 2.2576 36 1 2.9034 -4.2517 1.5651 37 1 2.3061 -5.6054 0.5744 38 1 1.0408 -4.0613 -0.8475 39 1 2.7336 -3.5131 -0.7661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:32 Heat of formation + Delta-G solvation = -88.188483 kcal Electronic energy + Delta-G solvation = -26076.803390 eV Core-core repulsion = 21797.973925 eV Total energy + Delta-G solvation = -4278.829465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.28932 -47.84205 -47.72231 -40.56335 -38.15010 -35.38050 -32.94647 -32.59191 -31.01762 -30.00321 -28.98250 -26.60374 -25.11478 -23.24341 -22.90718 -22.22847 -21.40968 -19.48908 -18.68017 -18.66154 -18.58833 -17.37295 -16.63737 -16.31100 -15.79907 -14.99436 -14.83806 -14.73543 -14.46202 -14.41342 -14.20082 -13.97756 -13.90503 -13.89372 -13.68498 -13.56767 -13.18470 -12.93026 -12.83333 -12.39604 -12.13234 -11.60762 -11.21547 -11.08882 -10.84855 -10.78852 -10.47451 -10.31402 -10.13023 -9.99568 -9.83415 -9.71813 -9.69456 -8.56644 -7.80961 -6.80031 -5.88867 -3.31732 0.70793 1.20846 2.28771 3.06009 3.33315 3.39487 3.40621 3.45718 3.49665 3.90578 4.27571 4.42049 4.58698 4.82606 4.93042 4.99656 5.11253 5.22204 5.28256 5.35072 5.41255 5.60856 5.69932 5.88842 5.98516 6.10483 6.13017 6.30456 6.35791 6.39574 6.48151 6.64157 6.81749 6.93917 7.19370 7.45139 7.54748 7.71167 7.90458 8.34940 9.10990 9.73751 10.29478 11.20098 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034573 B = 0.002603 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.678088 B =10752.214835 C =10973.825479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.157 3.843 13 N -0.710 5.710 14 C 0.418 3.582 15 C -0.208 4.208 16 C -0.032 4.032 17 C -0.196 4.196 18 C 0.087 3.913 19 C 0.522 3.478 20 F -0.173 7.173 21 F -0.166 7.166 22 F -0.173 7.173 23 N -0.518 5.518 24 C -0.146 4.146 25 C 0.147 3.853 26 H 0.256 0.744 27 H 0.022 0.978 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.404 0.596 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 -19.132 5.272 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.053 3.947 13 N -0.339 5.339 14 C 0.179 3.821 15 C -0.233 4.233 16 C -0.057 4.057 17 C -0.220 4.220 18 C -0.053 4.053 19 C 0.467 3.533 20 F -0.154 7.154 21 F -0.147 7.147 22 F -0.155 7.155 23 N -0.236 5.236 24 C -0.187 4.187 25 C 0.020 3.980 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.240 0.760 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.305 -18.496 5.919 19.423 hybrid contribution 0.335 0.505 -0.194 0.636 sum 0.030 -17.992 5.725 18.881 Atomic orbital electron populations 1.70004 1.05272 1.25812 1.53604 1.25055 0.95307 0.98500 1.00599 0.86356 0.78933 0.83195 0.78197 1.20828 1.21579 1.20969 1.19140 0.92610 0.84748 1.42105 0.91638 1.44075 1.35820 1.01639 1.49907 1.20755 0.88836 0.98067 0.87529 1.22547 1.00960 0.94163 1.00995 1.21186 0.97824 0.88616 0.87047 1.45155 1.71365 1.01395 1.15951 1.18263 0.89521 0.85828 0.88441 1.21786 1.06514 0.97085 0.97933 1.21328 0.93611 0.92260 0.98517 1.21427 1.05923 1.01703 0.92946 1.20383 1.01303 0.90807 0.92822 1.17969 0.74242 0.78760 0.82321 1.93229 1.34965 1.90655 1.96596 1.93225 1.93686 1.79826 1.48012 1.93195 1.71385 1.54704 1.96178 1.66539 1.21775 1.02021 1.33283 1.22539 0.97594 0.99527 0.99047 1.20880 0.98008 0.86676 0.92420 0.93450 0.96024 0.88882 0.92458 0.91892 0.90494 0.76009 0.83647 0.83802 0.84162 0.91755 0.92839 0.96284 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 11.19 55.49 0.62 -24.48 16 2 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 3 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.72 9.58 -15.06 -0.14 -6.86 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -13.81 2.99 -172.32 -0.52 -14.32 16 10 C 0.17 3.82 5.30 -3.71 -0.02 3.80 16 11 C -0.15 -2.50 5.55 -26.61 -0.15 -2.65 16 12 C 0.16 2.34 2.10 -67.89 -0.14 2.20 16 13 N -0.71 -9.74 5.24 -53.89 -0.28 -10.02 16 14 C 0.42 5.71 7.63 -155.02 -1.18 4.53 16 15 C -0.21 -2.43 8.81 -39.23 -0.35 -2.78 16 16 C -0.03 -0.30 10.17 -39.32 -0.40 -0.70 16 17 C -0.20 -2.00 9.43 -39.42 -0.37 -2.37 16 18 C 0.09 1.09 6.29 -82.61 -0.52 0.57 16 19 C 0.52 6.19 3.43 36.01 0.12 6.31 16 20 F -0.17 -2.08 17.30 2.25 0.04 -2.04 16 21 F -0.17 -2.18 17.04 2.25 0.04 -2.14 16 22 F -0.17 -1.83 16.43 2.25 0.04 -1.79 16 23 N -0.52 -7.42 9.99 -8.67 -0.09 -7.50 16 24 C -0.15 -2.31 5.56 -26.61 -0.15 -2.46 16 25 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.08 1.13 6.46 -51.93 -0.34 0.80 16 32 H 0.40 5.41 8.73 -40.82 -0.36 5.05 16 33 H 0.15 1.61 6.08 -52.49 -0.32 1.29 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 1.09 7.59 -52.49 -0.40 0.69 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.75 7.65 -51.93 -0.40 0.36 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -28.28 331.85 -8.20 -36.49 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.62 Total: 2.44 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -3.41 Total: 2.41 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.26 Total: -56.32 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.11 Total: -5.97 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.28 -8.20 -36.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.702 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds