Wall clock time and date at job start Tue Mar 31 2020 10:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48500 * 109.47098 * 240.00147 * 3 2 1 5 5 H 1.48500 * 109.46971 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47112 * 120.00148 * 3 2 1 7 7 C 1.38811 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99807 * 163.06874 * 7 2 1 9 9 N 1.36935 * 119.99813 * 343.07467 * 7 2 1 10 10 C 1.46929 * 120.63106 * 331.83452 * 9 7 2 11 11 C 1.53192 * 108.77323 * 233.62636 * 10 9 7 12 12 C 1.53035 * 109.31728 * 305.36643 * 11 10 9 13 13 N 1.46499 * 109.46259 * 181.38062 * 12 11 10 14 14 C 1.39007 * 119.99897 * 154.96727 * 13 12 11 15 15 C 1.39136 * 119.70550 * 0.28490 * 14 13 12 16 16 C 1.38296 * 119.09578 * 180.22381 * 15 14 13 17 17 C 1.38890 * 118.50431 * 359.50346 * 16 15 14 18 18 C 1.38025 * 119.32830 * 0.25216 * 17 16 15 19 19 C 1.50701 * 119.57080 * 180.02562 * 18 17 16 20 20 F 1.39908 * 109.46954 * 89.99700 * 19 18 17 21 21 F 1.39895 * 109.47429 * 210.00091 * 19 18 17 22 22 F 1.39903 * 109.47046 * 330.00674 * 19 18 17 23 23 N 1.31971 * 120.85682 * 0.02562 * 18 17 16 24 24 C 1.53044 * 109.52838 * 61.36984 * 12 11 10 25 25 C 1.46928 * 120.63022 * 151.85329 * 9 7 2 26 26 H 0.97001 * 119.99594 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58602 * 113.84438 * 10 9 7 28 28 H 1.08991 * 109.70143 * 353.48662 * 10 9 7 29 29 H 1.08992 * 109.49667 * 185.40827 * 11 10 9 30 30 H 1.09010 * 109.51921 * 65.33668 * 11 10 9 31 31 H 1.08996 * 109.45673 * 301.35650 * 12 11 10 32 32 H 0.97001 * 120.00164 * 334.98068 * 13 12 11 33 33 H 1.07999 * 120.45224 * 359.97438 * 15 14 13 34 34 H 1.07993 * 120.75059 * 179.77955 * 16 15 14 35 35 H 1.07995 * 120.33726 * 180.27479 * 17 16 15 36 36 H 1.09005 * 109.49537 * 58.58072 * 24 12 11 37 37 H 1.09003 * 109.50156 * 178.67721 * 24 12 11 38 38 H 1.08999 * 109.59031 * 246.15860 * 25 9 7 39 39 H 1.09004 * 109.58926 * 6.44055 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2718 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3398 1.2682 11 6 0.4983 -3.3182 2.4151 12 6 0.8133 -4.7000 1.8378 13 7 1.0416 -5.6461 2.9328 14 6 0.8317 -7.0055 2.7320 15 6 0.4106 -7.4615 1.4868 16 6 0.2012 -8.8160 1.3022 17 6 0.4308 -9.6738 2.3702 18 6 0.8530 -9.1531 3.5768 19 6 1.1044 -10.0789 4.7391 20 9 2.4378 -10.5020 4.7183 21 9 0.8480 -9.4036 5.9371 22 9 0.2609 -11.1907 4.6406 23 7 1.0393 -7.8552 3.7259 24 6 2.0687 -4.6164 0.9664 25 6 1.8144 -3.6529 -0.1972 26 1 -0.4849 0.8401 0.0004 27 1 -0.6768 -2.6411 0.7373 28 1 0.0966 -1.3344 1.6685 29 1 -0.3821 -3.3831 3.0544 30 1 1.3478 -2.9661 3.0005 31 1 -0.0267 -5.0408 1.2327 32 1 1.3390 -5.3239 3.7981 33 1 0.2455 -6.7668 0.6765 34 1 -0.1291 -9.1987 0.3479 35 1 0.2810 -10.7373 2.2576 36 1 2.9034 -4.2517 1.5651 37 1 2.3061 -5.6054 0.5744 38 1 1.0408 -4.0613 -0.8475 39 1 2.7336 -3.5131 -0.7661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110824706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:31 Heat of formation + Delta-G solvation = -103.537251 kcal Electronic energy + Delta-G solvation = -26077.468963 eV Core-core repulsion = 21797.973925 eV Total energy + Delta-G solvation = -4279.495037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.20324 -48.72858 -48.67645 -41.49655 -39.52339 -36.75983 -34.30610 -33.69641 -32.43526 -31.50175 -30.33607 -27.49597 -26.83684 -24.32060 -24.12930 -23.61813 -22.67595 -20.94346 -19.60160 -19.57749 -19.54179 -18.87402 -17.95996 -17.21138 -16.97940 -16.59180 -15.96141 -15.78542 -15.58902 -15.41756 -15.36142 -15.22552 -15.11661 -14.84047 -14.82991 -14.75170 -14.49261 -14.39527 -13.99291 -13.58691 -13.24361 -13.03343 -12.96058 -12.58851 -12.47541 -12.32537 -12.05439 -11.91508 -11.72059 -11.34144 -11.10687 -10.92012 -10.72638 -10.53214 -8.81739 -8.69273 -7.88608 -5.32886 -0.17168 0.36784 1.37920 1.47800 1.49945 1.56267 2.04606 2.51489 2.55912 2.57606 3.00445 3.27968 3.36766 3.66943 3.75529 3.86478 3.97023 4.01103 4.15113 4.17658 4.28831 4.44231 4.46452 4.66153 4.81003 4.88959 4.91637 4.98598 5.06410 5.16678 5.19011 5.34123 5.42992 5.49497 5.64872 5.72364 5.90238 6.39361 6.49444 6.92876 7.15295 7.86129 8.36240 9.17928 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034573 B = 0.002603 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.678088 B =10752.214835 C =10973.825479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.264 4.264 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.181 3.819 11 C -0.133 4.133 12 C 0.173 3.827 13 N -0.712 5.712 14 C 0.400 3.600 15 C -0.213 4.213 16 C -0.021 4.021 17 C -0.183 4.183 18 C 0.064 3.936 19 C 0.525 3.475 20 F -0.176 7.176 21 F -0.177 7.177 22 F -0.165 7.165 23 N -0.544 5.544 24 C -0.131 4.131 25 C 0.144 3.856 26 H 0.250 0.750 27 H 0.006 0.994 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.404 0.596 33 H 0.153 0.847 34 H 0.183 0.817 35 H 0.168 0.832 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 -21.295 4.737 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.394 4.394 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.055 3.945 11 C -0.172 4.172 12 C 0.069 3.931 13 N -0.342 5.342 14 C 0.162 3.838 15 C -0.238 4.238 16 C -0.046 4.046 17 C -0.207 4.207 18 C -0.075 4.075 19 C 0.470 3.530 20 F -0.157 7.157 21 F -0.159 7.159 22 F -0.146 7.146 23 N -0.263 5.263 24 C -0.172 4.172 25 C 0.018 3.982 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.239 0.761 33 H 0.171 0.829 34 H 0.201 0.799 35 H 0.186 0.814 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.095 -20.723 5.394 21.414 hybrid contribution 0.265 1.031 -0.055 1.066 sum 0.170 -19.692 5.339 20.403 Atomic orbital electron populations 1.70145 1.06480 1.25945 1.55226 1.25731 0.96011 1.01285 1.01211 0.85417 0.77649 0.79580 0.78250 1.20201 1.22063 1.20652 1.19445 0.92824 0.86112 1.41065 0.91747 1.44328 1.35939 1.02408 1.50767 1.20528 0.88094 0.97399 0.88517 1.22271 1.01399 0.94430 0.99127 1.20839 0.97559 0.87608 0.87135 1.44858 1.72391 1.01561 1.15429 1.18420 0.90639 0.85457 0.89263 1.21995 1.06241 0.98359 0.97242 1.21793 0.91848 0.91184 0.99800 1.21825 1.03672 1.03270 0.91945 1.20611 1.02523 0.90431 0.93890 1.17957 0.74205 0.78908 0.81940 1.93221 1.35245 1.90680 1.96578 1.93200 1.93759 1.80152 1.48742 1.93208 1.71072 1.54200 1.96102 1.66421 1.22712 1.02971 1.34166 1.22341 0.97577 0.99567 0.97666 1.21020 0.97835 0.85546 0.93768 0.94047 0.97546 0.92499 0.90949 0.92514 0.89719 0.76078 0.82933 0.79930 0.81408 0.92927 0.90392 0.95602 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.19 11.19 21.65 0.24 -52.95 16 2 C -0.05 -2.52 4.92 84.86 0.42 -2.10 16 3 Si 0.96 43.73 29.59 68.60 2.03 45.76 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.26 -13.99 9.58 84.03 0.81 -13.18 16 8 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 9 N -0.61 -28.73 2.99 -699.09 -2.09 -30.82 16 10 C 0.18 8.07 5.30 86.36 0.46 8.52 16 11 C -0.13 -4.47 5.55 30.67 0.17 -4.30 16 12 C 0.17 4.90 2.10 45.02 0.09 5.00 16 13 N -0.71 -18.52 5.24 -324.42 -1.70 -20.22 16 14 C 0.40 10.16 7.63 133.06 1.02 11.17 16 15 C -0.21 -4.32 8.81 22.50 0.20 -4.13 16 16 C -0.02 -0.32 10.17 22.44 0.23 -0.09 16 17 C -0.18 -3.09 9.43 22.38 0.21 -2.87 16 18 C 0.06 1.48 6.29 42.49 0.27 1.74 16 19 C 0.53 11.66 3.43 71.24 0.24 11.90 16 20 F -0.18 -4.00 17.30 44.97 0.78 -3.22 16 21 F -0.18 -4.52 17.04 44.97 0.77 -3.75 16 22 F -0.16 -3.12 16.43 44.97 0.74 -2.38 16 23 N -0.54 -14.80 9.99 -181.33 -1.81 -16.62 16 24 C -0.13 -3.92 5.56 30.67 0.17 -3.75 16 25 C 0.14 5.39 6.52 86.36 0.56 5.95 16 26 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.06 2.94 6.06 -2.39 -0.01 2.93 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.08 2.31 6.46 -2.39 -0.02 2.29 16 32 H 0.40 10.47 8.73 -92.71 -0.81 9.66 16 33 H 0.15 2.85 6.08 -2.91 -0.02 2.83 16 34 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.17 1.85 7.59 -2.91 -0.02 1.83 16 36 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 1.97 7.65 -2.39 -0.02 1.96 16 38 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 Total: -1.00 -62.05 331.85 4.08 -57.97 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.29 Total: 12.37 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 4.84 Total: 13.87 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -5.36 Total: -120.61 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 2.28 Total: -9.36 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -62.05 4.08 -57.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.568 kcal (2) G-P(sol) polarization free energy of solvation -62.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds