Wall clock time and date at job start Tue Mar 31 2020 10:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99881 * 2 1 4 4 H 1.48506 * 109.46575 * 239.99748 * 3 2 1 5 5 H 1.48499 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47188 * 119.99717 * 3 2 1 7 7 C 1.38816 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99901 * 197.35372 * 7 2 1 9 9 N 1.36939 * 119.99406 * 17.35912 * 7 2 1 10 10 C 1.46925 * 120.62266 * 207.67683 * 9 7 2 11 11 C 1.53198 * 108.77426 * 233.62777 * 10 9 7 12 12 C 1.53048 * 109.30832 * 305.36776 * 11 10 9 13 13 N 1.46505 * 109.45348 * 181.38159 * 12 11 10 14 14 C 1.39008 * 119.99470 * 154.99880 * 13 12 11 15 15 N 1.32429 * 119.70774 * 0.02562 * 14 13 12 16 16 C 1.31936 * 121.62269 * 179.97438 * 15 14 13 17 17 C 1.38064 * 120.85551 * 359.97438 * 16 15 14 18 18 C 1.38843 * 119.33030 * 359.97438 * 17 16 15 19 19 C 1.38340 * 118.50345 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.44781 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47591 * 359.97438 * 20 19 18 22 22 F 1.39905 * 109.46981 * 119.98407 * 20 19 18 23 23 F 1.39901 * 109.47281 * 239.97683 * 20 19 18 24 24 C 1.53036 * 109.53841 * 61.36380 * 12 11 10 25 25 C 1.46921 * 120.63241 * 27.69340 * 9 7 2 26 26 H 0.97005 * 120.00359 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.59069 * 113.84626 * 10 9 7 28 28 H 1.08998 * 109.71045 * 353.48741 * 10 9 7 29 29 H 1.08996 * 109.50061 * 185.41702 * 11 10 9 30 30 H 1.08997 * 109.51989 * 65.32867 * 11 10 9 31 31 H 1.08999 * 109.45982 * 301.35301 * 12 11 10 32 32 H 0.97000 * 120.00348 * 334.99727 * 13 12 11 33 33 H 1.08004 * 119.57066 * 179.72464 * 16 15 14 34 34 H 1.08005 * 120.33851 * 179.97438 * 17 16 15 35 35 H 1.07994 * 120.74761 * 180.02562 * 18 17 16 36 36 H 1.09008 * 109.49584 * 58.58434 * 24 12 11 37 37 H 1.08997 * 109.49856 * 178.67625 * 24 12 11 38 38 H 1.08997 * 109.58914 * 246.15422 * 25 9 7 39 39 H 1.08992 * 109.58955 * 6.58896 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 1.8195 -3.6546 0.1819 11 6 2.0752 -4.6099 -0.9881 12 6 0.8197 -4.6902 -1.8596 13 7 1.0495 -5.6284 -2.9611 14 6 -0.0267 -6.2683 -3.5649 15 7 -1.2573 -6.0251 -3.1401 16 6 -2.3059 -6.6109 -3.6860 17 6 -2.1555 -7.5044 -4.7277 18 6 -0.8819 -7.7862 -5.2034 19 6 0.1983 -7.1568 -4.6112 20 6 1.5997 -7.4299 -5.0932 21 9 1.5599 -8.3515 -6.1450 22 9 2.1801 -6.2377 -5.5395 23 9 2.3604 -7.9540 -4.0426 24 6 0.5016 -3.3052 -2.4276 25 6 0.2281 -2.3350 -1.2740 26 1 -0.4851 0.8401 -0.0004 27 1 1.0470 -4.0690 0.8298 28 1 2.7393 -3.5190 0.7507 29 1 2.3146 -5.6011 -0.6028 30 1 2.9092 -4.2402 -1.5846 31 1 -0.0195 -5.0367 -1.2565 32 1 1.9526 -5.8030 -3.2691 33 1 -3.2945 -6.3915 -3.3104 34 1 -3.0197 -7.9794 -5.1681 35 1 -0.7378 -8.4811 -6.0174 36 1 1.3504 -2.9472 -3.0105 37 1 -0.3789 -3.3676 -3.0670 38 1 -0.6741 -2.6417 -0.7448 39 1 0.0986 -1.3268 -1.6673 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110824883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:05 Heat of formation + Delta-G solvation = -90.469649 kcal Electronic energy + Delta-G solvation = -26979.803554 eV Core-core repulsion = 22700.875170 eV Total energy + Delta-G solvation = -4278.928384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.31687 -47.84430 -47.73995 -40.46856 -37.93734 -35.25512 -33.16595 -32.59988 -30.73822 -29.93400 -28.82766 -26.34002 -25.07768 -23.20112 -22.72314 -22.09747 -21.37364 -19.46739 -18.67494 -18.61234 -18.48651 -17.52314 -16.86261 -16.31696 -15.28469 -14.94171 -14.80381 -14.66191 -14.38843 -14.33716 -14.19936 -14.03490 -13.91584 -13.78873 -13.75683 -13.50962 -13.03136 -12.96650 -12.78853 -12.32911 -11.93203 -11.48320 -11.17606 -11.09526 -10.71379 -10.65166 -10.31414 -10.23149 -10.19118 -9.91950 -9.66807 -9.53401 -9.50404 -8.47242 -7.84978 -6.69304 -5.78785 -3.21083 0.77462 1.27428 2.54143 3.12567 3.39052 3.44803 3.46088 3.56965 3.60328 3.84659 4.31075 4.41804 4.49877 4.65690 4.92180 5.01682 5.28493 5.29522 5.39939 5.46416 5.61888 5.65585 5.84424 5.90680 6.06847 6.20447 6.23774 6.42145 6.54373 6.63927 6.65305 6.76615 6.91717 7.13733 7.27341 7.40208 7.67374 7.79552 8.06569 8.44846 9.21038 9.84306 10.40648 11.29773 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.003542 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.596355 B = 7903.240042 C = 8455.792752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.151 3.849 11 C -0.142 4.142 12 C 0.158 3.842 13 N -0.706 5.706 14 C 0.459 3.541 15 N -0.530 5.530 16 C 0.187 3.813 17 C -0.252 4.252 18 C 0.017 3.983 19 C -0.324 4.324 20 C 0.518 3.482 21 F -0.179 7.179 22 F -0.177 7.177 23 F -0.179 7.179 24 C -0.145 4.145 25 C 0.175 3.825 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.402 0.598 33 H 0.164 0.836 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 -17.481 -10.902 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.024 3.976 11 C -0.182 4.182 12 C 0.055 3.945 13 N -0.333 5.333 14 C 0.220 3.780 15 N -0.247 5.247 16 C 0.026 3.974 17 C -0.275 4.275 18 C -0.009 4.009 19 C -0.334 4.334 20 C 0.463 3.537 21 F -0.160 7.160 22 F -0.158 7.158 23 F -0.160 7.160 24 C -0.185 4.185 25 C 0.049 3.951 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.239 0.761 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.399 -16.567 -10.005 19.502 hybrid contribution 1.117 0.117 -1.031 1.525 sum -1.282 -16.450 -11.037 19.851 Atomic orbital electron populations 1.70023 1.05253 1.25647 1.53630 1.25028 0.95260 0.98388 1.00799 0.86381 0.78941 0.83384 0.78123 1.21058 1.21612 1.20871 1.19142 0.92711 0.84886 1.41779 0.91699 1.44093 1.35886 1.01357 1.50155 1.20812 0.98010 0.86654 0.92167 1.22383 0.96805 0.99862 0.99186 1.21128 0.98811 0.88550 0.85994 1.45464 1.05600 1.45197 1.37018 1.18019 0.88328 0.85739 0.85952 1.67541 0.97147 1.28285 1.31688 1.22787 0.97012 0.88017 0.89538 1.21769 0.97393 1.05465 1.02839 1.21127 0.91214 0.93331 0.95245 1.20184 0.92831 1.12591 1.07803 1.18078 0.86544 0.74075 0.75027 1.93139 1.96749 1.67302 1.58820 1.93233 1.86367 1.46641 1.89572 1.93215 1.78405 1.86869 1.57505 1.22579 1.00421 0.95032 1.00496 1.20752 0.88622 0.98139 0.87594 0.93550 0.96135 0.92318 0.92593 0.91917 0.89406 0.76084 0.81902 0.84296 0.84008 0.92880 0.92798 0.96063 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 11.19 55.49 0.62 -25.47 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.26 -6.99 9.59 -15.06 -0.14 -7.13 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 10 C 0.15 3.11 6.51 -3.71 -0.02 3.08 16 11 C -0.14 -2.44 5.55 -26.60 -0.15 -2.59 16 12 C 0.16 2.75 2.43 -67.88 -0.16 2.58 16 13 N -0.71 -10.74 4.98 -53.89 -0.27 -11.01 16 14 C 0.46 6.67 7.37 -155.00 -1.14 5.53 16 15 N -0.53 -7.69 9.20 -12.44 -0.11 -7.80 16 16 C 0.19 2.02 11.17 -17.57 -0.20 1.83 16 17 C -0.25 -2.26 10.10 -39.42 -0.40 -2.66 16 18 C 0.02 0.17 9.53 -39.32 -0.37 -0.21 16 19 C -0.32 -4.05 5.40 -104.27 -0.56 -4.61 16 20 C 0.52 6.30 2.80 36.00 0.10 6.40 16 21 F -0.18 -1.99 16.05 2.25 0.04 -1.95 16 22 F -0.18 -2.33 16.27 2.25 0.04 -2.29 16 23 F -0.18 -2.24 16.26 2.25 0.04 -2.20 16 24 C -0.14 -2.87 5.66 -26.61 -0.15 -3.02 16 25 C 0.18 4.20 5.31 -3.71 -0.02 4.18 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.62 7.54 -51.93 -0.39 1.23 16 32 H 0.40 5.76 6.02 -40.82 -0.25 5.52 16 33 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.14 1.07 7.25 -52.49 -0.38 0.69 16 36 H 0.05 1.09 8.14 -51.92 -0.42 0.66 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -29.88 330.14 -8.21 -38.09 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.67 Total: 2.87 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -3.31 Total: 3.41 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.28 Total: -59.52 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.11 Total: -6.45 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.88 -8.21 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110824883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.379 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds