Wall clock time and date at job start Tue Mar 31 2020 10:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86807 * 119.99890 * 2 1 4 4 H 1.48501 * 109.46926 * 269.99609 * 3 2 1 5 5 H 1.48501 * 109.47039 * 29.99976 * 3 2 1 6 6 H 1.48499 * 109.46697 * 149.99665 * 3 2 1 7 7 C 1.38650 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99697 * 0.02562 * 7 2 1 9 9 O 1.34824 * 120.00014 * 180.02562 * 7 2 1 10 10 C 1.35756 * 117.00310 * 185.05365 * 9 7 2 11 11 C 1.38877 * 120.06332 * 354.46958 * 10 9 7 12 12 C 1.38102 * 119.92957 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06609 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.92872 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47256 * 89.99935 * 14 13 12 16 16 O 1.21285 * 119.99626 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00122 * 179.97438 * 15 14 13 18 18 C 1.46499 * 120.00115 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47408 * 180.02562 * 18 17 15 20 20 N 1.46499 * 109.47408 * 179.97438 * 19 18 17 21 21 C 1.34938 * 126.03725 * 125.00045 * 20 19 18 22 22 C 1.35321 * 107.74693 * 179.97438 * 21 20 19 23 23 C 1.39867 * 107.91766 * 359.97438 * 22 21 20 24 24 N 1.30842 * 108.20463 * 359.74288 * 23 22 21 25 25 C 1.38300 * 120.14172 * 0.24982 * 13 12 11 26 26 C 1.38104 * 120.06432 * 359.45750 * 25 13 12 27 27 H 0.97001 * 119.99621 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.03897 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.96674 * 180.02562 * 12 11 10 30 30 H 1.08993 * 109.46903 * 329.99745 * 14 13 12 31 31 H 1.08998 * 109.46938 * 209.99765 * 14 13 12 32 32 H 0.96995 * 119.99846 * 0.02562 * 17 15 14 33 33 H 1.09006 * 109.47143 * 60.00072 * 18 17 15 34 34 H 1.09006 * 109.47373 * 300.00466 * 18 17 15 35 35 H 1.09001 * 109.46552 * 60.00048 * 19 18 17 36 36 H 1.09001 * 109.46724 * 300.00335 * 19 18 17 37 37 H 1.07999 * 126.12988 * 359.97438 * 21 20 19 38 38 H 1.07999 * 126.04040 * 180.02562 * 22 21 20 39 39 H 1.08003 * 125.89860 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.96397 * 179.70208 * 25 13 12 41 41 H 1.08002 * 120.03046 * 180.26701 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1050 11 6 3.2235 -3.5743 -0.0921 12 6 3.8535 -4.7986 -0.1996 13 6 5.2298 -4.8614 -0.3195 14 6 5.9141 -6.1991 -0.4360 15 6 6.0219 -6.5833 -1.8892 16 8 5.5863 -5.8435 -2.7460 17 7 6.6031 -7.7485 -2.2369 18 6 6.7083 -8.1218 -3.6496 19 6 7.4030 -9.4799 -3.7680 20 7 7.5076 -9.8535 -5.1807 21 6 8.6427 -10.1789 -5.8338 22 6 8.3147 -10.4592 -7.1164 23 6 6.9317 -10.3002 -7.2514 24 7 6.4460 -9.9427 -6.0903 25 6 5.9800 -3.6996 -0.3269 26 6 5.3554 -2.4720 -0.2258 27 1 -0.4849 0.8401 -0.0004 28 1 2.1487 -3.5260 0.0028 29 1 3.2707 -5.7079 -0.1900 30 1 5.3334 -6.9519 0.0968 31 1 6.9120 -6.1357 -0.0021 32 1 6.9518 -8.3400 -1.5517 33 1 7.2891 -7.3686 -4.1822 34 1 5.7106 -8.1853 -4.0840 35 1 6.8218 -10.2328 -3.2355 36 1 8.4007 -9.4167 -3.3335 37 1 9.6352 -10.2101 -5.4090 38 1 8.9997 -10.7545 -7.8974 39 1 6.3623 -10.4512 -8.1567 40 1 7.0551 -3.7522 -0.4159 41 1 5.9414 -1.5649 -0.2360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111576289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:45 Heat of formation + Delta-G solvation = 45.806830 kcal Electronic energy + Delta-G solvation = -24033.778094 eV Core-core repulsion = 20302.615842 eV Total energy + Delta-G solvation = -3731.162252 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48614 -39.89509 -38.93813 -36.76880 -35.77297 -33.30072 -32.47761 -31.59120 -30.50216 -30.20987 -28.83825 -26.75196 -24.97555 -23.74327 -22.07540 -21.54344 -21.13618 -20.99453 -20.05927 -17.86188 -17.71555 -17.29656 -16.92738 -16.35069 -16.01250 -15.24268 -14.82772 -14.65468 -14.62499 -14.14873 -13.98744 -13.78201 -13.70601 -13.50545 -13.44915 -13.13399 -12.69042 -12.57003 -12.51370 -12.17632 -12.08863 -11.60631 -11.28082 -10.98685 -10.92634 -10.73591 -10.65027 -10.12863 -9.88047 -9.78287 -9.35309 -9.30827 -8.98996 -8.82816 -8.20656 -7.28078 -6.38298 -4.04630 1.51119 1.94830 2.18816 2.21130 2.51703 2.68928 3.14547 3.24726 3.28998 3.42881 3.98809 4.26409 4.26793 4.42742 4.48859 4.62325 4.68103 4.87163 4.92860 5.12274 5.13863 5.21473 5.23630 5.34511 5.42077 5.57513 5.61520 5.65068 5.68065 5.77529 6.12287 6.16272 6.29545 6.35901 6.59141 6.59530 6.82386 7.04464 7.24466 7.30606 7.33686 7.33977 7.64936 7.83943 8.07390 8.22185 8.97034 9.59648 10.69381 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024840 B = 0.002022 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.963457 B =13845.132056 C =14267.995148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.164 4.164 14 C -0.079 4.079 15 C 0.510 3.490 16 O -0.514 6.514 17 N -0.741 5.741 18 C 0.110 3.890 19 C 0.126 3.874 20 N -0.373 5.373 21 C 0.054 3.946 22 C -0.274 4.274 23 C 0.046 3.954 24 N -0.290 5.290 25 C -0.062 4.062 26 C -0.191 4.191 27 H 0.279 0.721 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.184 0.816 40 H 0.110 0.890 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.488 -22.503 -5.903 30.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.076 4.076 13 C -0.165 4.165 14 C -0.119 4.119 15 C 0.297 3.703 16 O -0.387 6.387 17 N -0.397 5.397 18 C -0.015 4.015 19 C 0.004 3.996 20 N -0.156 5.156 21 C -0.092 4.092 22 C -0.304 4.304 23 C -0.141 4.141 24 N -0.111 5.111 25 C -0.080 4.080 26 C -0.211 4.211 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.191 0.809 38 H 0.166 0.834 39 H 0.201 0.799 40 H 0.128 0.872 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.966 -21.209 -5.707 28.376 hybrid contribution 1.084 0.057 -0.274 1.119 sum 19.050 -21.153 -5.981 29.088 Atomic orbital electron populations 1.69651 1.05550 1.28437 1.48148 1.24473 0.95042 0.98830 0.95725 0.86174 0.80290 0.81418 0.78972 1.19883 1.20808 1.18379 1.20773 0.76903 0.96643 1.52087 0.87620 1.83568 1.22621 1.25787 1.80296 1.19123 0.91714 0.85484 0.92672 1.21230 1.01072 0.91800 1.09735 1.20573 0.93252 0.96765 0.97016 1.18690 0.93587 0.92522 1.11690 1.20417 1.02356 0.97130 0.92006 1.21074 0.76891 0.80084 0.92270 1.90781 1.45498 1.50401 1.52018 1.45914 1.63526 1.22838 1.07404 1.21434 1.02419 0.94209 0.83454 1.21783 1.03148 0.97325 0.77365 1.48512 1.05005 1.52891 1.09174 1.22600 0.92326 1.00602 0.93650 1.21552 0.96239 1.15481 0.97090 1.23971 0.94577 0.98938 0.96592 1.77452 1.10902 1.23153 0.99642 1.20397 0.98114 0.91382 0.98119 1.20148 0.91964 0.97740 1.11204 0.91088 0.84932 0.87498 0.88727 0.88782 0.76752 0.91082 0.89991 0.89040 0.87997 0.80876 0.83422 0.79898 0.87213 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.96 55.48 0.77 -25.14 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 22.17 28.62 -169.99 -4.86 17.31 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.39 -11.24 9.95 30.88 0.31 -10.94 16 8 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 9 O -0.22 -5.93 8.59 0.05 0.00 -5.93 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.22 -4.94 9.17 -39.39 -0.36 -5.30 16 12 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 13 C -0.16 -2.75 4.38 -104.57 -0.46 -3.20 16 14 C -0.08 -0.91 5.83 -29.03 -0.17 -1.08 16 15 C 0.51 6.66 7.82 -10.99 -0.09 6.58 16 16 O -0.51 -9.67 16.03 5.55 0.09 -9.58 16 17 N -0.74 -6.27 5.56 -60.29 -0.33 -6.60 16 18 C 0.11 1.01 5.87 -4.04 -0.02 0.99 16 19 C 0.13 0.73 6.62 -4.04 -0.03 0.70 16 20 N -0.37 -3.15 3.68 -61.37 -0.23 -3.37 16 21 C 0.05 0.36 11.45 -17.23 -0.20 0.16 16 22 C -0.27 -1.96 10.80 -40.01 -0.43 -2.39 16 23 C 0.05 0.40 12.03 -17.36 -0.21 0.19 16 24 N -0.29 -3.20 12.42 30.63 0.38 -2.82 16 25 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 26 C -0.19 -3.95 9.99 -39.40 -0.39 -4.35 16 27 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16 29 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.40 1.73 8.47 -40.82 -0.35 1.39 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.27 8.07 -51.93 -0.42 -0.15 16 37 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -37.06 360.47 -7.05 -44.11 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.13 Total: 2.84 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -3.17 Total: -16.25 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.59 Total: -37.92 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.09 Total: -15.51 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.06 -7.05 -44.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111576289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.914 kcal (2) G-P(sol) polarization free energy of solvation -37.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds