Wall clock time and date at job start Tue Mar 31 2020 10:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86807 * 119.99890 * 2 1 4 4 H 1.48501 * 109.46926 * 269.99609 * 3 2 1 5 5 H 1.48501 * 109.47039 * 29.99976 * 3 2 1 6 6 H 1.48499 * 109.46697 * 149.99665 * 3 2 1 7 7 C 1.38650 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99697 * 0.02562 * 7 2 1 9 9 O 1.34824 * 120.00014 * 180.02562 * 7 2 1 10 10 C 1.35756 * 117.00310 * 185.05365 * 9 7 2 11 11 C 1.38877 * 120.06332 * 354.46958 * 10 9 7 12 12 C 1.38102 * 119.92957 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06609 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.92872 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47256 * 89.99935 * 14 13 12 16 16 O 1.21285 * 119.99626 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00122 * 179.97438 * 15 14 13 18 18 C 1.46499 * 120.00115 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47408 * 180.02562 * 18 17 15 20 20 N 1.46499 * 109.47408 * 179.97438 * 19 18 17 21 21 C 1.34938 * 126.03725 * 125.00045 * 20 19 18 22 22 C 1.35321 * 107.74693 * 179.97438 * 21 20 19 23 23 C 1.39867 * 107.91766 * 359.97438 * 22 21 20 24 24 N 1.30842 * 108.20463 * 359.74288 * 23 22 21 25 25 C 1.38300 * 120.14172 * 0.24982 * 13 12 11 26 26 C 1.38104 * 120.06432 * 359.45750 * 25 13 12 27 27 H 0.97001 * 119.99621 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.03897 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.96674 * 180.02562 * 12 11 10 30 30 H 1.08993 * 109.46903 * 329.99745 * 14 13 12 31 31 H 1.08998 * 109.46938 * 209.99765 * 14 13 12 32 32 H 0.96995 * 119.99846 * 0.02562 * 17 15 14 33 33 H 1.09006 * 109.47143 * 60.00072 * 18 17 15 34 34 H 1.09006 * 109.47373 * 300.00466 * 18 17 15 35 35 H 1.09001 * 109.46552 * 60.00048 * 19 18 17 36 36 H 1.09001 * 109.46724 * 300.00335 * 19 18 17 37 37 H 1.07999 * 126.12988 * 359.97438 * 21 20 19 38 38 H 1.07999 * 126.04040 * 180.02562 * 22 21 20 39 39 H 1.08003 * 125.89860 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.96397 * 179.70208 * 25 13 12 41 41 H 1.08002 * 120.03046 * 180.26701 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1050 11 6 3.2235 -3.5743 -0.0921 12 6 3.8535 -4.7986 -0.1996 13 6 5.2298 -4.8614 -0.3195 14 6 5.9141 -6.1991 -0.4360 15 6 6.0219 -6.5833 -1.8892 16 8 5.5863 -5.8435 -2.7460 17 7 6.6031 -7.7485 -2.2369 18 6 6.7083 -8.1218 -3.6496 19 6 7.4030 -9.4799 -3.7680 20 7 7.5076 -9.8535 -5.1807 21 6 8.6427 -10.1789 -5.8338 22 6 8.3147 -10.4592 -7.1164 23 6 6.9317 -10.3002 -7.2514 24 7 6.4460 -9.9427 -6.0903 25 6 5.9800 -3.6996 -0.3269 26 6 5.3554 -2.4720 -0.2258 27 1 -0.4849 0.8401 -0.0004 28 1 2.1487 -3.5260 0.0028 29 1 3.2707 -5.7079 -0.1900 30 1 5.3334 -6.9519 0.0968 31 1 6.9120 -6.1357 -0.0021 32 1 6.9518 -8.3400 -1.5517 33 1 7.2891 -7.3686 -4.1822 34 1 5.7106 -8.1853 -4.0840 35 1 6.8218 -10.2328 -3.2355 36 1 8.4007 -9.4167 -3.3335 37 1 9.6352 -10.2101 -5.4090 38 1 8.9997 -10.7545 -7.8974 39 1 6.3623 -10.4512 -8.1567 40 1 7.0551 -3.7522 -0.4159 41 1 5.9414 -1.5649 -0.2360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111576289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:45 Heat of formation + Delta-G solvation = 18.694424 kcal Electronic energy + Delta-G solvation = -24034.953776 eV Core-core repulsion = 20302.615842 eV Total energy + Delta-G solvation = -3732.337934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03010 -41.15564 -40.47456 -38.37760 -36.65078 -34.53595 -34.04199 -32.93534 -31.81630 -31.08335 -29.69413 -28.14808 -26.73859 -24.52748 -23.71852 -22.51859 -21.96708 -21.73913 -21.14435 -19.83161 -19.13149 -18.37283 -17.76636 -17.21261 -16.93415 -16.65836 -16.09080 -15.96668 -15.68707 -15.56942 -15.27921 -15.17529 -14.84691 -14.63538 -14.35121 -14.27584 -14.12731 -14.04767 -13.61627 -13.18371 -13.05534 -12.88590 -12.61775 -12.51786 -12.40801 -12.32612 -11.93746 -11.56260 -11.29366 -11.03748 -10.87146 -10.41266 -10.19243 -9.79709 -9.52661 -8.99334 -8.51737 -6.24425 0.57668 0.59996 0.97869 1.28792 1.33840 1.48125 1.50311 1.69157 1.96754 2.26652 2.32745 2.78001 3.04621 3.17709 3.50484 3.76635 3.83318 4.02955 4.04296 4.12543 4.14169 4.19852 4.26945 4.47408 4.54096 4.57008 4.70610 4.74062 4.81799 4.87780 4.92468 4.98011 5.16702 5.24540 5.33358 5.37234 5.55566 5.72938 5.74202 5.78616 5.90398 6.15699 6.24238 6.57860 6.76791 6.82317 7.32841 7.56979 8.60087 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024840 B = 0.002022 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.963457 B =13845.132056 C =14267.995148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.078 0.922 9 O -0.246 6.246 10 C 0.116 3.884 11 C -0.241 4.241 12 C -0.067 4.067 13 C -0.139 4.139 14 C -0.076 4.076 15 C 0.510 3.490 16 O -0.583 6.583 17 N -0.713 5.713 18 C 0.117 3.883 19 C 0.130 3.870 20 N -0.383 5.383 21 C 0.060 3.940 22 C -0.289 4.289 23 C 0.032 3.968 24 N -0.347 5.347 25 C -0.059 4.059 26 C -0.195 4.195 27 H 0.285 0.715 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.425 0.575 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.215 0.785 38 H 0.168 0.832 39 H 0.197 0.803 40 H 0.156 0.844 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.157 -24.980 -5.175 35.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.260 4.260 12 C -0.085 4.085 13 C -0.140 4.140 14 C -0.115 4.115 15 C 0.298 3.702 16 O -0.462 6.462 17 N -0.368 5.368 18 C -0.009 4.009 19 C 0.009 3.991 20 N -0.166 5.166 21 C -0.085 4.085 22 C -0.318 4.318 23 C -0.153 4.153 24 N -0.169 5.169 25 C -0.077 4.077 26 C -0.214 4.214 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.263 0.737 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.123 0.877 36 H 0.164 0.836 37 H 0.232 0.768 38 H 0.185 0.815 39 H 0.214 0.786 40 H 0.174 0.826 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.687 -23.788 -4.951 33.243 hybrid contribution -0.142 0.439 -0.559 0.725 sum 22.546 -23.348 -5.510 32.921 Atomic orbital electron populations 1.69737 1.06896 1.29606 1.50223 1.25329 0.95966 1.02274 0.95528 0.85181 0.78833 0.77237 0.79199 1.19334 1.18836 1.18576 1.20702 0.78183 0.96088 1.52687 0.90440 1.83505 1.21177 1.27464 1.83242 1.19701 0.93345 0.85060 0.95122 1.21260 1.00050 0.93452 1.11216 1.20938 0.94931 0.96085 0.96509 1.19348 0.92754 0.95403 1.06521 1.20564 1.04971 0.94473 0.91485 1.21309 0.76166 0.80471 0.92247 1.90787 1.48752 1.52831 1.53832 1.45575 1.61627 1.21710 1.07925 1.21260 1.00474 0.95965 0.83190 1.21952 1.05384 0.95063 0.76703 1.48727 1.05018 1.53051 1.09791 1.23301 0.93252 0.98601 0.93374 1.21923 0.95810 1.15825 0.98267 1.24401 0.95884 0.98369 0.96668 1.77379 1.13099 1.25363 1.01050 1.20980 1.00495 0.90165 0.96016 1.20529 0.90515 0.99957 1.10360 0.90552 0.87729 0.84985 0.85192 0.83998 0.73673 0.93030 0.93797 0.87745 0.83605 0.76830 0.81467 0.78611 0.82604 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.16 13.96 21.61 0.30 -56.86 16 2 C 0.01 0.43 5.49 84.83 0.47 0.89 16 3 Si 0.97 47.27 28.62 68.60 1.96 49.24 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.40 -24.81 9.95 67.92 0.68 -24.14 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 9 O -0.25 -14.14 8.59 -22.74 -0.20 -14.33 16 10 C 0.12 5.83 6.65 22.57 0.15 5.98 16 11 C -0.24 -11.39 9.17 22.39 0.21 -11.19 16 12 C -0.07 -2.46 9.69 22.25 0.22 -2.24 16 13 C -0.14 -4.21 4.38 -19.83 -0.09 -4.29 16 14 C -0.08 -1.30 5.83 29.10 0.17 -1.13 16 15 C 0.51 11.49 7.82 87.66 0.69 12.18 16 16 O -0.58 -21.28 16.03 -3.05 -0.05 -21.32 16 17 N -0.71 -9.17 5.56 -463.04 -2.57 -11.74 16 18 C 0.12 1.93 5.87 86.38 0.51 2.43 16 19 C 0.13 1.05 6.62 86.38 0.57 1.62 16 20 N -0.38 -5.64 3.68 -348.06 -1.28 -6.92 16 21 C 0.06 0.61 11.45 83.54 0.96 1.56 16 22 C -0.29 -3.59 10.80 21.99 0.24 -3.35 16 23 C 0.03 0.55 12.03 85.23 1.02 1.57 16 24 N -0.35 -7.58 12.42 -57.02 -0.71 -8.29 16 25 C -0.06 -1.87 9.69 22.25 0.22 -1.65 16 26 C -0.19 -7.90 9.99 22.39 0.22 -7.68 16 27 H 0.28 16.11 8.31 -92.71 -0.77 15.34 16 28 H 0.10 5.44 5.64 -2.91 -0.02 5.43 16 29 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 30 H 0.13 1.47 8.08 -2.39 -0.02 1.45 16 31 H 0.14 1.25 8.08 -2.39 -0.02 1.23 16 32 H 0.42 1.18 8.47 -92.71 -0.79 0.39 16 33 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.15 -0.10 8.07 -2.39 -0.02 -0.12 16 37 H 0.22 0.16 8.06 -2.91 -0.02 0.13 16 38 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -91.04 360.47 3.95 -87.08 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.28 Total: 12.58 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 6.22 Total: -29.43 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -4.26 Total: -83.82 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.24 Total: -35.66 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.96 Total: 49.24 kcal Total: -91.04 3.95 -87.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111576289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.775 kcal (2) G-P(sol) polarization free energy of solvation -91.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds