Wall clock time and date at job start Tue Mar 31 2020 11:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36699 * 126.60078 * 2 1 4 4 C 1.47362 * 125.77647 * 0.02562 * 3 2 1 5 5 O 1.21520 * 120.00631 * 359.97438 * 4 3 2 6 6 O 1.34766 * 119.99767 * 180.02562 * 4 3 2 7 7 C 1.45196 * 116.99847 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.47507 * 30.00116 * 7 6 4 9 9 C 1.52997 * 109.47054 * 269.99505 * 7 6 4 10 10 C 1.50707 * 109.46932 * 149.99686 * 7 6 4 11 11 H 1.07995 * 119.99890 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99708 * 179.97438 * 10 7 6 13 13 N 1.31519 * 120.00596 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99676 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47083 * 90.00191 * 14 12 10 16 16 H 1.48501 * 109.46978 * 210.00169 * 14 12 10 17 17 H 1.48495 * 109.47124 * 330.00071 * 14 12 10 18 18 N 1.34462 * 108.44052 * 180.28270 * 3 2 1 19 19 N 1.28754 * 109.56906 * 359.55386 * 18 3 2 20 20 N 1.35038 * 126.60574 * 180.02562 * 2 1 3 21 21 C 1.40223 * 126.60677 * 0.02562 * 20 2 1 22 22 C 1.38829 * 120.06585 * 221.74067 * 21 20 2 23 23 C 1.38124 * 119.92987 * 179.76497 * 22 21 20 24 24 C 1.38270 * 120.06709 * 0.53043 * 23 22 21 25 25 C 1.50705 * 119.93100 * 179.71917 * 24 23 22 26 26 C 1.38273 * 120.13305 * 359.70263 * 24 23 22 27 27 C 1.38123 * 120.06653 * 0.03947 * 26 24 23 28 28 H 1.08995 * 109.47183 * 84.65800 * 1 2 3 29 29 H 1.09007 * 109.47112 * 204.65821 * 1 2 3 30 30 H 1.09004 * 109.47400 * 324.65308 * 1 2 3 31 31 H 1.09002 * 109.47170 * 60.00459 * 9 7 6 32 32 H 1.08994 * 109.47349 * 300.00462 * 9 7 6 33 33 H 1.08998 * 109.47120 * 180.02562 * 9 7 6 34 34 H 0.96997 * 120.00097 * 180.02562 * 13 12 10 35 35 H 1.08003 * 120.03153 * 359.97438 * 22 21 20 36 36 H 1.08002 * 119.96109 * 180.23106 * 23 22 21 37 37 H 1.09000 * 109.47062 * 269.97720 * 25 24 23 38 38 H 1.09000 * 109.47425 * 29.98524 * 25 24 23 39 39 H 1.09004 * 109.46952 * 149.98094 * 25 24 23 40 40 H 1.07999 * 119.96598 * 180.02562 * 26 24 23 41 41 H 1.07995 * 120.03336 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0974 0.0000 4 6 1.8759 2.5019 0.0005 5 8 0.6890 2.7625 0.0006 6 8 2.7843 3.4974 0.0000 7 6 2.2729 4.8563 0.0000 8 1 1.3122 4.8831 0.5142 9 6 2.0927 5.3334 -1.4425 10 6 3.2480 5.7600 0.7099 11 1 4.1608 5.3536 1.1196 12 6 2.9750 7.1056 0.8353 13 7 1.8636 7.6006 0.3359 14 14 4.1840 8.2257 1.7146 15 1 5.1588 8.7684 0.7346 16 1 3.4469 9.3463 2.3520 17 1 4.9072 7.4530 2.7562 18 7 3.5997 0.6784 -0.0063 19 7 3.6314 -0.6088 -0.0008 20 7 2.3122 -1.0840 -0.0005 21 6 1.9072 -2.4265 -0.0016 22 6 2.5644 -3.3519 0.7979 23 6 2.1600 -4.6726 0.7983 24 6 1.1089 -5.0755 -0.0047 25 6 0.6743 -6.5185 -0.0066 26 6 0.4556 -4.1571 -0.8057 27 6 0.8520 -2.8339 -0.8064 28 1 -0.3633 0.0957 -1.0231 29 1 -0.3634 -0.9340 0.4288 30 1 -0.3634 0.8382 0.5945 31 1 1.3875 4.6799 -1.9560 32 1 3.0534 5.3067 -1.9567 33 1 1.7093 6.3537 -1.4425 34 1 1.6718 8.5473 0.4238 35 1 3.3887 -3.0387 1.4214 36 1 2.6684 -5.3922 1.4229 37 1 1.2282 -7.0638 -0.7708 38 1 0.8731 -6.9592 0.9703 39 1 -0.3929 -6.5763 -0.2208 40 1 -0.3653 -4.4746 -1.4316 41 1 0.3416 -2.1171 -1.4325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113690502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:30 Heat of formation + Delta-G solvation = 31.803026 kcal Electronic energy + Delta-G solvation = -25114.334991 eV Core-core repulsion = 21382.565488 eV Total energy + Delta-G solvation = -3731.769502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48034 -39.87892 -39.16498 -35.76382 -35.38704 -33.20663 -32.87429 -31.68103 -31.40063 -29.61161 -28.06079 -27.13965 -25.27376 -24.13912 -23.29790 -23.03632 -21.33263 -20.72040 -19.78631 -18.38250 -16.83945 -16.58835 -16.31934 -15.97789 -15.65415 -15.40737 -14.77479 -14.65449 -14.42228 -14.24845 -14.16975 -14.06414 -13.23776 -13.18858 -12.99090 -12.82470 -12.62404 -12.22943 -12.07757 -12.03088 -11.80901 -11.63945 -11.22580 -11.16148 -11.03567 -10.79294 -10.74175 -10.33898 -10.23454 -9.85431 -9.54557 -9.51985 -9.25658 -8.87087 -8.82014 -8.44449 -6.13944 -4.19785 0.29228 0.80009 1.29853 1.81018 1.83819 3.08982 3.29706 3.34302 3.38112 3.52846 3.55422 4.11656 4.21135 4.30809 4.37247 4.40953 4.51889 4.61268 4.78690 4.92888 5.00528 5.09891 5.13447 5.19170 5.25405 5.33046 5.43677 5.48065 5.52097 5.69740 5.81188 5.86669 6.00700 6.05521 6.19636 6.60094 6.66476 6.93659 6.93771 7.14885 7.61883 7.75219 7.88742 7.99161 8.17603 8.63295 8.92464 9.45098 10.93644 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035912 B = 0.002509 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.502855 B =11158.873450 C =11607.369585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.127 3.873 3 C -0.072 4.072 4 C 0.544 3.456 5 O -0.514 6.514 6 O -0.334 6.334 7 C 0.215 3.785 8 H 0.049 0.951 9 C -0.155 4.155 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.912 3.088 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.271 1.271 18 N -0.168 5.168 19 N -0.065 5.065 20 N -0.322 5.322 21 C 0.127 3.873 22 C -0.092 4.092 23 C -0.105 4.105 24 C -0.077 4.077 25 C -0.117 4.117 26 C -0.103 4.103 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.016 0.984 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.266 0.734 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 -27.401 -1.398 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.007 4.007 3 C -0.208 4.208 4 C 0.386 3.614 5 O -0.404 6.404 6 O -0.248 6.248 7 C 0.162 3.838 8 H 0.067 0.933 9 C -0.213 4.213 10 C -0.556 4.556 11 H 0.089 0.911 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.739 3.261 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 N -0.041 5.041 19 N -0.044 5.044 20 N -0.103 5.103 21 C 0.036 3.964 22 C -0.112 4.112 23 C -0.123 4.123 24 C -0.078 4.078 25 C -0.174 4.174 26 C -0.122 4.122 27 C -0.130 4.130 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.495 -27.398 -1.411 27.800 hybrid contribution -0.343 0.951 0.334 1.065 sum -4.838 -26.447 -1.077 26.907 Atomic orbital electron populations 1.20818 0.84338 1.05153 1.05227 1.21941 0.96250 0.85617 0.96916 1.20440 0.88821 0.93566 1.17982 1.19280 0.84445 0.84406 0.73255 1.90772 1.17553 1.84352 1.47702 1.86657 1.38844 1.18443 1.80863 1.20742 0.96619 0.71495 0.94898 0.93311 1.22172 0.99046 1.03602 0.96469 1.21043 1.06222 0.92060 1.36255 0.91130 1.24878 0.95873 0.97610 0.95644 1.69898 1.23945 1.13988 1.45043 0.86258 0.80457 0.79673 0.79671 1.20350 1.21025 1.19589 1.74799 1.18916 1.02950 1.07485 1.82166 0.94926 1.03707 1.23556 1.47538 1.07063 1.04652 1.51003 1.17486 0.98484 0.80018 1.00417 1.21080 0.99813 0.92688 0.97587 1.20985 0.96884 0.95006 0.99432 1.20121 0.95331 0.96570 0.95740 1.20844 1.01943 0.91561 1.03021 1.20928 1.00359 0.91599 0.99286 1.21152 0.96626 0.97231 0.97967 0.88583 0.90434 0.86815 0.96461 0.94310 0.88120 0.92450 0.84467 0.84680 0.90667 0.91123 0.91112 0.84618 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 8.19 36.00 0.29 -0.80 16 2 C 0.13 1.92 6.84 -81.74 -0.56 1.36 16 3 C -0.07 -1.38 7.02 -83.56 -0.59 -1.97 16 4 C 0.54 12.28 7.93 34.44 0.27 12.55 16 5 O -0.51 -11.75 14.11 -19.28 -0.27 -12.02 16 6 O -0.33 -8.59 9.87 -40.67 -0.40 -8.99 16 7 C 0.21 5.93 2.56 -27.88 -0.07 5.86 16 8 H 0.05 1.45 7.16 -51.93 -0.37 1.07 16 9 C -0.16 -4.02 9.33 37.16 0.35 -3.68 16 10 C -0.52 -14.99 8.90 -34.44 -0.31 -15.30 16 11 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 12 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 13 N -0.89 -25.54 11.32 55.43 0.63 -24.92 16 14 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 N -0.17 -3.33 12.39 32.84 0.41 -2.92 16 19 N -0.07 -1.13 13.64 60.35 0.82 -0.30 16 20 N -0.32 -4.61 3.71 -6.71 -0.02 -4.63 16 21 C 0.13 1.38 6.13 -83.58 -0.51 0.87 16 22 C -0.09 -0.86 9.86 -39.40 -0.39 -1.25 16 23 C -0.10 -0.71 9.69 -39.61 -0.38 -1.10 16 24 C -0.08 -0.47 5.88 -104.59 -0.62 -1.08 16 25 C -0.12 -0.42 10.01 36.01 0.36 -0.06 16 26 C -0.10 -0.65 9.69 -39.61 -0.38 -1.04 16 27 C -0.11 -0.92 8.37 -39.41 -0.33 -1.25 16 28 H 0.10 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.08 0.66 6.98 -51.92 -0.36 0.30 16 30 H 0.11 1.47 6.73 -51.93 -0.35 1.12 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.10 2.75 6.07 -51.93 -0.32 2.44 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 36 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 39 H 0.07 0.19 8.08 -51.93 -0.42 -0.23 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 41 H 0.14 1.01 7.02 -52.49 -0.37 0.64 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -33.15 354.57 -6.59 -39.73 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.11 Total: -2.64 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.96 Total: -5.24 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 1.83 Total: -32.78 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.67 Total: -21.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.15 -6.59 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.536 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds