Wall clock time and date at job start Tue Mar 31 2020 11:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36699 * 126.60078 * 2 1 4 4 C 1.47362 * 125.77647 * 0.02562 * 3 2 1 5 5 O 1.21520 * 120.00631 * 359.97438 * 4 3 2 6 6 O 1.34766 * 119.99767 * 180.02562 * 4 3 2 7 7 C 1.45196 * 116.99847 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.47507 * 30.00116 * 7 6 4 9 9 C 1.52997 * 109.47054 * 269.99505 * 7 6 4 10 10 C 1.50707 * 109.46932 * 149.99686 * 7 6 4 11 11 H 1.07995 * 119.99890 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99708 * 179.97438 * 10 7 6 13 13 N 1.31519 * 120.00596 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99676 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47083 * 90.00191 * 14 12 10 16 16 H 1.48501 * 109.46978 * 210.00169 * 14 12 10 17 17 H 1.48495 * 109.47124 * 330.00071 * 14 12 10 18 18 N 1.34462 * 108.44052 * 180.28270 * 3 2 1 19 19 N 1.28754 * 109.56906 * 359.55386 * 18 3 2 20 20 N 1.35038 * 126.60574 * 180.02562 * 2 1 3 21 21 C 1.40223 * 126.60677 * 0.02562 * 20 2 1 22 22 C 1.38829 * 120.06585 * 221.74067 * 21 20 2 23 23 C 1.38124 * 119.92987 * 179.76497 * 22 21 20 24 24 C 1.38270 * 120.06709 * 0.53043 * 23 22 21 25 25 C 1.50705 * 119.93100 * 179.71917 * 24 23 22 26 26 C 1.38273 * 120.13305 * 359.70263 * 24 23 22 27 27 C 1.38123 * 120.06653 * 0.03947 * 26 24 23 28 28 H 1.08995 * 109.47183 * 84.65800 * 1 2 3 29 29 H 1.09007 * 109.47112 * 204.65821 * 1 2 3 30 30 H 1.09004 * 109.47400 * 324.65308 * 1 2 3 31 31 H 1.09002 * 109.47170 * 60.00459 * 9 7 6 32 32 H 1.08994 * 109.47349 * 300.00462 * 9 7 6 33 33 H 1.08998 * 109.47120 * 180.02562 * 9 7 6 34 34 H 0.96997 * 120.00097 * 180.02562 * 13 12 10 35 35 H 1.08003 * 120.03153 * 359.97438 * 22 21 20 36 36 H 1.08002 * 119.96109 * 180.23106 * 23 22 21 37 37 H 1.09000 * 109.47062 * 269.97720 * 25 24 23 38 38 H 1.09000 * 109.47425 * 29.98524 * 25 24 23 39 39 H 1.09004 * 109.46952 * 149.98094 * 25 24 23 40 40 H 1.07999 * 119.96598 * 180.02562 * 26 24 23 41 41 H 1.07995 * 120.03336 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0974 0.0000 4 6 1.8759 2.5019 0.0005 5 8 0.6890 2.7625 0.0006 6 8 2.7843 3.4974 0.0000 7 6 2.2729 4.8563 0.0000 8 1 1.3122 4.8831 0.5142 9 6 2.0927 5.3334 -1.4425 10 6 3.2480 5.7600 0.7099 11 1 4.1608 5.3536 1.1196 12 6 2.9750 7.1056 0.8353 13 7 1.8636 7.6006 0.3359 14 14 4.1840 8.2257 1.7146 15 1 5.1588 8.7684 0.7346 16 1 3.4469 9.3463 2.3520 17 1 4.9072 7.4530 2.7562 18 7 3.5997 0.6784 -0.0063 19 7 3.6314 -0.6088 -0.0008 20 7 2.3122 -1.0840 -0.0005 21 6 1.9072 -2.4265 -0.0016 22 6 2.5644 -3.3519 0.7979 23 6 2.1600 -4.6726 0.7983 24 6 1.1089 -5.0755 -0.0047 25 6 0.6743 -6.5185 -0.0066 26 6 0.4556 -4.1571 -0.8057 27 6 0.8520 -2.8339 -0.8064 28 1 -0.3633 0.0957 -1.0231 29 1 -0.3634 -0.9340 0.4288 30 1 -0.3634 0.8382 0.5945 31 1 1.3875 4.6799 -1.9560 32 1 3.0534 5.3067 -1.9567 33 1 1.7093 6.3537 -1.4425 34 1 1.6718 8.5473 0.4238 35 1 3.3887 -3.0387 1.4214 36 1 2.6684 -5.3922 1.4229 37 1 1.2282 -7.0638 -0.7708 38 1 0.8731 -6.9592 0.9703 39 1 -0.3929 -6.5763 -0.2208 40 1 -0.3653 -4.4746 -1.4316 41 1 0.3416 -2.1171 -1.4325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113690502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:29 Heat of formation + Delta-G solvation = 12.523281 kcal Electronic energy + Delta-G solvation = -25115.171023 eV Core-core repulsion = 21382.565488 eV Total energy + Delta-G solvation = -3732.605535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.74009 -41.12047 -40.43251 -37.67139 -36.36772 -35.32277 -33.93157 -32.51325 -32.11806 -31.61971 -29.27687 -27.78473 -27.45669 -25.56089 -24.30654 -23.80585 -22.91316 -21.72883 -21.43555 -19.71091 -18.74629 -18.00650 -17.72829 -17.41157 -16.68325 -16.57081 -16.47792 -16.00291 -15.61528 -15.10306 -14.96225 -14.73384 -14.63396 -14.26304 -14.14656 -14.11063 -13.82898 -13.37129 -13.33928 -13.17428 -13.04054 -12.98009 -12.80500 -12.64218 -12.46002 -12.40209 -12.20143 -12.16712 -11.73581 -11.64019 -11.56841 -11.01266 -10.61495 -10.51478 -10.12473 -9.58001 -8.29154 -6.45122 -0.61056 0.19494 0.23802 0.41059 0.75012 1.41185 1.43678 1.54384 1.82559 1.86579 2.39025 2.51444 2.95907 3.01023 3.30142 3.47023 3.60187 3.77020 3.85396 3.90951 4.24263 4.25905 4.38554 4.39199 4.46923 4.52124 4.59037 4.73348 4.79204 4.81596 4.90160 4.92771 4.97193 5.05567 5.13823 5.20724 5.27763 5.45918 5.48049 5.52261 5.60829 5.84299 5.85948 6.02817 6.50756 6.63307 6.89706 7.25331 8.78657 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035912 B = 0.002509 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.502855 B =11158.873450 C =11607.369585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.149 3.851 3 C -0.108 4.108 4 C 0.542 3.458 5 O -0.524 6.524 6 O -0.352 6.352 7 C 0.217 3.783 8 H 0.019 0.981 9 C -0.142 4.142 10 C -0.550 4.550 11 H 0.061 0.939 12 C 0.019 3.981 13 N -0.913 5.913 14 Si 0.982 3.018 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.270 1.270 18 N -0.203 5.203 19 N -0.077 5.077 20 N -0.303 5.303 21 C 0.082 3.918 22 C -0.102 4.102 23 C -0.105 4.105 24 C -0.066 4.066 25 C -0.118 4.118 26 C -0.099 4.099 27 C -0.107 4.107 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.272 0.728 35 H 0.126 0.874 36 H 0.158 0.842 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.167 0.833 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -30.142 -1.556 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.013 3.987 3 C -0.245 4.245 4 C 0.386 3.614 5 O -0.414 6.414 6 O -0.267 6.267 7 C 0.164 3.836 8 H 0.037 0.963 9 C -0.200 4.200 10 C -0.588 4.588 11 H 0.079 0.921 12 C -0.181 4.181 13 N -0.551 5.551 14 Si 0.805 3.195 15 H -0.192 1.192 16 H -0.197 1.197 17 H -0.194 1.194 18 N -0.077 5.077 19 N -0.055 5.055 20 N -0.083 5.083 21 C -0.007 4.007 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.066 4.066 25 C -0.174 4.174 26 C -0.118 4.118 27 C -0.127 4.127 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.176 0.824 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.185 0.815 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.618 -30.187 -1.577 30.746 hybrid contribution -0.114 1.485 0.373 1.536 sum -5.732 -28.702 -1.204 29.293 Atomic orbital electron populations 1.21000 0.81416 1.06261 1.06559 1.22359 0.97570 0.84528 0.94267 1.20191 0.89843 0.92639 1.21794 1.19703 0.84099 0.85081 0.72549 1.90741 1.17629 1.84756 1.48234 1.86637 1.39928 1.18325 1.81815 1.20499 0.95054 0.72730 0.95270 0.96297 1.21994 0.99329 1.02857 0.95784 1.21258 1.06456 0.93241 1.37841 0.92111 1.25778 0.97689 0.98673 0.95926 1.69992 1.25185 1.14703 1.45170 0.85196 0.78179 0.77544 0.78560 1.19218 1.19738 1.19439 1.74755 1.19738 1.04194 1.08983 1.82038 0.96875 1.02712 1.23894 1.47685 1.05821 1.05941 1.48808 1.17937 1.00905 0.78442 1.03442 1.21156 0.99716 0.93693 0.97664 1.21273 0.97168 0.94136 0.99737 1.20541 0.94020 0.98013 0.94057 1.20939 1.02923 0.89552 1.03988 1.21318 1.00776 0.90506 0.99155 1.21350 0.95568 0.98502 0.97315 0.86327 0.86989 0.88427 0.95225 0.94074 0.89521 0.91823 0.85567 0.82422 0.89686 0.90171 0.89707 0.81539 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 8.19 71.24 0.58 -1.41 16 2 C 0.15 4.52 6.84 41.70 0.29 4.80 16 3 C -0.11 -4.34 7.02 40.78 0.29 -4.05 16 4 C 0.54 25.66 7.93 70.22 0.56 26.22 16 5 O -0.52 -24.87 14.11 19.77 0.28 -24.59 16 6 O -0.35 -19.09 9.87 -56.77 -0.56 -19.65 16 7 C 0.22 12.55 2.56 29.85 0.08 12.63 16 8 H 0.02 1.20 7.16 -2.39 -0.02 1.18 16 9 C -0.14 -7.60 9.33 71.98 0.67 -6.92 16 10 C -0.55 -32.97 8.90 25.60 0.23 -32.74 16 11 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 12 C 0.02 1.10 5.30 84.65 0.45 1.55 16 13 N -0.91 -53.05 11.32 21.45 0.24 -52.81 16 14 Si 0.98 44.53 29.54 68.60 2.03 46.56 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 N -0.20 -8.47 12.39 -50.02 -0.62 -9.09 16 19 N -0.08 -2.74 13.64 37.02 0.50 -2.23 16 20 N -0.30 -8.65 3.71 -175.14 -0.65 -9.30 16 21 C 0.08 1.69 6.13 38.08 0.23 1.92 16 22 C -0.10 -1.81 9.86 22.38 0.22 -1.59 16 23 C -0.10 -1.16 9.69 22.25 0.22 -0.94 16 24 C -0.07 -0.55 5.88 -19.85 -0.12 -0.66 16 25 C -0.12 -0.31 10.01 71.24 0.71 0.40 16 26 C -0.10 -0.86 9.69 22.25 0.22 -0.65 16 27 C -0.11 -1.50 8.37 22.38 0.19 -1.32 16 28 H 0.12 2.03 8.12 -2.39 -0.02 2.01 16 29 H 0.11 1.59 6.98 -2.38 -0.02 1.57 16 30 H 0.10 2.49 6.73 -2.39 -0.02 2.47 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 4.87 6.07 -2.39 -0.01 4.85 16 34 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 0.11 8.08 -2.39 -0.02 0.09 16 39 H 0.08 0.05 8.08 -2.38 -0.02 0.03 16 40 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 41 H 0.15 1.71 7.02 -2.91 -0.02 1.69 16 Total: -1.00 -75.46 354.57 7.08 -68.38 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.06 Total: 5.51 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.81 Total: -2.77 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -0.52 Total: -73.44 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.28 Total: -44.24 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -75.46 7.08 -68.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.900 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds