Wall clock time and date at job start Tue Mar 31 2020 11:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38296 * 119.92342 * 2 1 4 4 C 1.38098 * 120.07945 * 180.02562 * 3 2 1 5 5 C 1.38928 * 119.91912 * 0.23237 * 4 3 2 6 6 N 1.39724 * 120.07369 * 179.72142 * 5 4 3 7 7 C 1.34775 * 119.99894 * 35.16880 * 6 5 4 8 8 O 1.21375 * 120.00393 * 4.99837 * 7 6 5 9 9 C 1.49352 * 119.99923 * 184.99768 * 7 6 5 10 10 O 1.21357 * 120.00490 * 354.44102 * 9 7 6 11 11 N 1.34781 * 120.00266 * 174.43555 * 9 7 6 12 12 C 1.46507 * 119.99520 * 354.63235 * 11 9 7 13 13 C 1.50700 * 109.46972 * 84.95531 * 12 11 9 14 14 H 1.08006 * 119.99825 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00204 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99789 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47257 * 89.99973 * 17 15 13 19 19 H 1.48508 * 109.46534 * 209.99607 * 17 15 13 20 20 H 1.48499 * 109.47406 * 329.99722 * 17 15 13 21 21 C 1.46494 * 120.00334 * 174.63353 * 11 9 7 22 22 C 1.53002 * 109.47320 * 94.46770 * 21 11 9 23 23 C 1.47201 * 109.47202 * 179.97438 * 22 21 11 24 24 N 9.65606 * 171.30927 * 1.28183 * 4 1 2 25 25 C 1.38931 * 119.85105 * 359.49399 * 5 4 3 26 26 C 1.38098 * 119.92190 * 0.52563 * 25 5 4 27 27 H 1.08990 * 109.47419 * 89.99895 * 1 2 3 28 28 H 1.09006 * 109.46876 * 210.00267 * 1 2 3 29 29 H 1.09004 * 109.47230 * 329.99421 * 1 2 3 30 30 H 1.08007 * 119.96061 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.03872 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00431 * 215.15823 * 6 5 4 33 33 H 1.08997 * 109.46693 * 204.94616 * 12 11 9 34 34 H 1.08995 * 109.47329 * 324.95403 * 12 11 9 35 35 H 0.96996 * 119.99805 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47010 * 214.46831 * 21 11 9 37 37 H 1.08998 * 109.47199 * 334.46429 * 21 11 9 38 38 H 1.08997 * 109.46660 * 299.99895 * 22 21 11 39 39 H 1.09002 * 109.46643 * 60.00069 * 22 21 11 40 40 H 1.07998 * 120.04129 * 180.25155 * 25 5 4 41 41 H 1.07994 * 119.96200 * 179.70198 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2024 -0.0005 5 6 4.2740 0.0001 -0.0060 6 7 5.6713 0.0002 -0.0124 7 6 6.3482 0.9531 0.6585 8 8 5.7479 1.7567 1.3420 9 6 7.8370 1.0203 0.5611 10 8 8.4454 0.1585 -0.0389 11 7 8.5051 2.0380 1.1395 12 6 7.7661 3.1393 1.7619 13 6 7.4018 2.7643 3.1754 14 1 7.6915 1.8017 3.5704 15 6 6.6979 3.6497 3.9639 16 7 6.3448 4.8216 3.4827 17 14 6.2459 3.1845 5.7157 18 1 7.3298 3.6114 6.6366 19 1 4.9789 3.8596 6.0957 20 1 6.0695 1.7129 5.8073 21 6 9.9700 2.0429 1.1459 22 6 10.4824 2.8515 -0.0477 23 6 11.9544 2.8570 -0.0410 24 7 13.0904 2.8603 -0.0339 25 6 3.5779 -1.2022 -0.0002 26 6 2.1969 -1.1985 -0.0001 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6549 2.1329 -0.0004 31 1 4.1159 2.1387 -0.0010 32 1 6.1541 -0.6856 -0.4996 33 1 8.3883 4.0342 1.7724 34 1 6.8576 3.3350 1.1924 35 1 5.8500 5.4445 4.0376 36 1 10.3278 2.4945 2.0712 37 1 10.3371 1.0191 1.0756 38 1 10.1246 2.3999 -0.9729 39 1 10.1153 3.8754 0.0227 40 1 4.1160 -2.1385 -0.0003 41 1 1.6551 -2.1327 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116733971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:48 Heat of formation + Delta-G solvation = -3.892524 kcal Electronic energy + Delta-G solvation = -25636.859037 eV Core-core repulsion = 21903.541660 eV Total energy + Delta-G solvation = -3733.317378 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63619 -39.28655 -37.84422 -36.75463 -35.75043 -34.55280 -32.77380 -31.39746 -31.17493 -30.80800 -27.29598 -26.82279 -25.09094 -23.35971 -22.88693 -22.32889 -20.77075 -19.33533 -17.77486 -17.48271 -16.95613 -16.51683 -16.15804 -15.49410 -15.26243 -14.96039 -14.73484 -14.67297 -14.30735 -13.86083 -13.76628 -13.68485 -13.39269 -13.21907 -13.02610 -12.47830 -12.37836 -12.24806 -12.22278 -12.04185 -11.81978 -11.71456 -11.38769 -11.07730 -10.98272 -10.86255 -10.81148 -10.58756 -10.07097 -9.90182 -9.77927 -8.91530 -8.71739 -8.38833 -8.11049 -7.80972 -6.08417 -4.09579 1.30982 1.54138 2.07128 2.66418 2.88130 2.92757 3.28909 3.36137 3.40081 3.66581 3.84266 3.98631 4.31480 4.43009 4.85382 4.92212 4.97705 5.13309 5.17745 5.20225 5.29537 5.32348 5.50449 5.56027 5.56449 5.68040 5.83710 5.89140 5.92333 6.10749 6.13563 6.41308 6.43219 6.47468 6.66494 6.72925 7.12437 7.22483 7.26722 7.50265 7.63678 7.77953 7.92880 8.10524 8.23921 8.53516 8.88765 9.53516 11.00702 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.004439 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.887927 B = 6306.547018 C = 8328.081433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C -0.099 4.099 4 C -0.113 4.113 5 C 0.154 3.846 6 N -0.664 5.664 7 C 0.485 3.515 8 O -0.423 6.423 9 C 0.511 3.489 10 O -0.555 6.555 11 N -0.561 5.561 12 C 0.230 3.770 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.071 3.929 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.122 3.878 22 C -0.045 4.045 23 C 0.221 3.779 24 N -0.447 5.447 25 C -0.145 4.145 26 C -0.104 4.104 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.415 0.585 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.262 0.738 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 -7.843 -9.176 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C -0.117 4.117 4 C -0.133 4.133 5 C 0.059 3.941 6 N -0.313 5.313 7 C 0.266 3.734 8 O -0.290 6.290 9 C 0.294 3.706 10 O -0.436 6.436 11 N -0.291 5.291 12 C 0.112 3.888 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.131 4.131 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.003 4.003 22 C -0.086 4.086 23 C -0.097 4.097 24 N -0.124 5.124 25 C -0.165 4.165 26 C -0.123 4.123 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.679 -7.414 -8.870 12.880 hybrid contribution -0.509 -0.493 0.948 1.184 sum -6.188 -7.907 -7.921 12.789 Atomic orbital electron populations 1.20729 0.91448 1.02559 1.01890 1.19867 0.95952 0.93207 1.02143 1.20919 0.93590 0.97577 0.99642 1.21211 0.94217 0.97813 1.00086 1.17707 0.82339 0.94075 0.99954 1.43243 1.04308 1.31661 1.52110 1.20326 0.89241 0.82619 0.81196 1.91054 1.69124 1.36002 1.32801 1.19851 0.87969 0.82629 0.80199 1.90675 1.69618 1.39945 1.43338 1.48220 1.05662 1.22732 1.52480 1.19964 0.92238 0.82634 0.94000 1.21144 1.35759 1.01933 0.96333 0.92728 1.24759 0.95244 0.94852 0.98268 1.69892 1.38983 1.07407 1.36678 0.86591 0.77915 0.78660 0.84787 1.20786 1.21164 1.20067 1.21298 0.80498 1.01271 0.97242 1.19740 0.81473 1.04841 1.02565 1.29034 0.95039 0.92733 0.92937 1.81192 1.13025 1.09318 1.08906 1.20881 0.94450 0.96465 1.04724 1.20737 0.93256 0.97444 1.00818 0.91564 0.91877 0.91678 0.85822 0.84524 0.74815 0.94535 0.91897 0.92814 0.88703 0.89484 0.87170 0.86654 0.85812 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.11 -1.32 5.88 -104.58 -0.62 -1.94 16 3 C -0.10 -1.34 9.69 -39.61 -0.38 -1.72 16 4 C -0.11 -1.78 8.65 -39.38 -0.34 -2.12 16 5 C 0.15 2.30 6.24 -83.75 -0.52 1.77 16 6 N -0.66 -10.07 5.32 -10.30 -0.05 -10.12 16 7 C 0.49 8.98 7.42 -11.63 -0.09 8.89 16 8 O -0.42 -9.31 9.96 5.48 0.05 -9.26 16 9 C 0.51 9.30 7.68 -11.63 -0.09 9.21 16 10 O -0.56 -10.01 16.05 5.49 0.09 -9.92 16 11 N -0.56 -10.19 2.47 -175.61 -0.43 -10.62 16 12 C 0.23 5.06 4.77 -5.19 -0.02 5.03 16 13 C -0.51 -13.03 7.74 -34.44 -0.27 -13.29 16 14 H 0.05 1.43 7.81 -52.48 -0.41 1.02 16 15 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 16 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.12 1.79 5.35 -4.04 -0.02 1.77 16 22 C -0.04 -0.53 6.03 -29.52 -0.18 -0.71 16 23 C 0.22 2.96 15.43 -20.76 -0.32 2.64 16 24 N -0.45 -7.10 18.54 42.16 0.78 -6.32 16 25 C -0.14 -1.82 9.97 -39.38 -0.39 -2.21 16 26 C -0.10 -1.20 9.69 -39.61 -0.38 -1.58 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.14 2.38 6.54 -52.49 -0.34 2.04 16 32 H 0.41 5.32 8.30 -40.82 -0.34 4.99 16 33 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 34 H 0.06 1.51 5.92 -51.93 -0.31 1.20 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 37 H 0.09 1.27 7.37 -51.93 -0.38 0.89 16 38 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -30.75 361.66 -6.89 -37.65 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.13 Total: 3.85 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -3.36 Total: 6.93 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 1.03 Total: -50.81 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.14 Total: -19.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.75 -6.89 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116733971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.754 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds