Wall clock time and date at job start Tue Mar 31 2020 11:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38296 * 119.92342 * 2 1 4 4 C 1.38098 * 120.07945 * 180.02562 * 3 2 1 5 5 C 1.38928 * 119.91912 * 0.23237 * 4 3 2 6 6 N 1.39724 * 120.07369 * 179.72142 * 5 4 3 7 7 C 1.34775 * 119.99894 * 35.16880 * 6 5 4 8 8 O 1.21375 * 120.00393 * 4.99837 * 7 6 5 9 9 C 1.49352 * 119.99923 * 184.99768 * 7 6 5 10 10 O 1.21357 * 120.00490 * 354.44102 * 9 7 6 11 11 N 1.34781 * 120.00266 * 174.43555 * 9 7 6 12 12 C 1.46507 * 119.99520 * 354.63235 * 11 9 7 13 13 C 1.50700 * 109.46972 * 84.95531 * 12 11 9 14 14 H 1.08006 * 119.99825 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00204 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99789 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47257 * 89.99973 * 17 15 13 19 19 H 1.48508 * 109.46534 * 209.99607 * 17 15 13 20 20 H 1.48499 * 109.47406 * 329.99722 * 17 15 13 21 21 C 1.46494 * 120.00334 * 174.63353 * 11 9 7 22 22 C 1.53002 * 109.47320 * 94.46770 * 21 11 9 23 23 C 1.47201 * 109.47202 * 179.97438 * 22 21 11 24 24 N 9.65606 * 171.30927 * 1.28183 * 4 1 2 25 25 C 1.38931 * 119.85105 * 359.49399 * 5 4 3 26 26 C 1.38098 * 119.92190 * 0.52563 * 25 5 4 27 27 H 1.08990 * 109.47419 * 89.99895 * 1 2 3 28 28 H 1.09006 * 109.46876 * 210.00267 * 1 2 3 29 29 H 1.09004 * 109.47230 * 329.99421 * 1 2 3 30 30 H 1.08007 * 119.96061 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.03872 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00431 * 215.15823 * 6 5 4 33 33 H 1.08997 * 109.46693 * 204.94616 * 12 11 9 34 34 H 1.08995 * 109.47329 * 324.95403 * 12 11 9 35 35 H 0.96996 * 119.99805 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47010 * 214.46831 * 21 11 9 37 37 H 1.08998 * 109.47199 * 334.46429 * 21 11 9 38 38 H 1.08997 * 109.46660 * 299.99895 * 22 21 11 39 39 H 1.09002 * 109.46643 * 60.00069 * 22 21 11 40 40 H 1.07998 * 120.04129 * 180.25155 * 25 5 4 41 41 H 1.07994 * 119.96200 * 179.70198 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5778 1.2024 -0.0005 5 6 4.2740 0.0001 -0.0060 6 7 5.6713 0.0002 -0.0124 7 6 6.3482 0.9531 0.6585 8 8 5.7479 1.7567 1.3420 9 6 7.8370 1.0203 0.5611 10 8 8.4454 0.1585 -0.0389 11 7 8.5051 2.0380 1.1395 12 6 7.7661 3.1393 1.7619 13 6 7.4018 2.7643 3.1754 14 1 7.6915 1.8017 3.5704 15 6 6.6979 3.6497 3.9639 16 7 6.3448 4.8216 3.4827 17 14 6.2459 3.1845 5.7157 18 1 7.3298 3.6114 6.6366 19 1 4.9789 3.8596 6.0957 20 1 6.0695 1.7129 5.8073 21 6 9.9700 2.0429 1.1459 22 6 10.4824 2.8515 -0.0477 23 6 11.9544 2.8570 -0.0410 24 7 13.0904 2.8603 -0.0339 25 6 3.5779 -1.2022 -0.0002 26 6 2.1969 -1.1985 -0.0001 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6549 2.1329 -0.0004 31 1 4.1159 2.1387 -0.0010 32 1 6.1541 -0.6856 -0.4996 33 1 8.3883 4.0342 1.7724 34 1 6.8576 3.3350 1.1924 35 1 5.8500 5.4445 4.0376 36 1 10.3278 2.4945 2.0712 37 1 10.3371 1.0191 1.0756 38 1 10.1246 2.3999 -0.9729 39 1 10.1153 3.8754 0.0227 40 1 4.1160 -2.1385 -0.0003 41 1 1.6551 -2.1327 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116733971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:47 Heat of formation + Delta-G solvation = -21.657762 kcal Electronic energy + Delta-G solvation = -25637.629396 eV Core-core repulsion = 21903.541660 eV Total energy + Delta-G solvation = -3734.087736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.00361 -40.50063 -39.13438 -37.99866 -37.14302 -35.82362 -34.63560 -32.52662 -32.40523 -31.83276 -29.08794 -27.92547 -26.25542 -25.10173 -24.05063 -23.53525 -21.87921 -20.70033 -19.11592 -18.75226 -18.40627 -18.16202 -17.52278 -16.88319 -16.50647 -16.25585 -16.15497 -15.90424 -15.74186 -15.13370 -14.91497 -14.63121 -14.51924 -14.37772 -14.29585 -14.18831 -13.64294 -13.60355 -13.38610 -13.15902 -13.06047 -12.91116 -12.76437 -12.70825 -12.40814 -12.30739 -12.03111 -11.94910 -11.78235 -11.64446 -11.09328 -10.54283 -10.19267 -9.81226 -9.67758 -8.92373 -8.09581 -6.14148 0.14330 0.51088 0.74107 1.37467 1.40138 1.43243 1.50515 1.75988 1.79128 2.27783 2.43777 2.59769 2.90069 3.16125 3.26474 3.47536 3.98380 4.06286 4.07623 4.09128 4.16792 4.47007 4.52091 4.53680 4.63543 4.79243 4.86441 4.89843 4.93033 5.00237 5.12680 5.18909 5.36128 5.39477 5.44455 5.53135 5.64465 5.74687 5.81912 6.12497 6.17327 6.20494 6.33915 6.55075 6.82427 6.90223 7.15107 7.50784 8.98495 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.004439 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.887927 B = 6306.547018 C = 8328.081433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.114 4.114 4 C -0.136 4.136 5 C 0.125 3.875 6 N -0.647 5.647 7 C 0.483 3.517 8 O -0.468 6.468 9 C 0.512 3.488 10 O -0.551 6.551 11 N -0.562 5.562 12 C 0.248 3.752 13 C -0.510 4.510 14 H 0.043 0.957 15 C 0.026 3.974 16 N -0.919 5.919 17 Si 0.940 3.060 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.281 1.281 21 C 0.118 3.882 22 C -0.031 4.031 23 C 0.246 3.754 24 N -0.488 5.488 25 C -0.139 4.139 26 C -0.102 4.102 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.426 0.574 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 -9.770 -9.650 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.132 4.132 4 C -0.157 4.157 5 C 0.032 3.968 6 N -0.296 5.296 7 C 0.264 3.736 8 O -0.338 6.338 9 C 0.295 3.705 10 O -0.431 6.431 11 N -0.292 5.292 12 C 0.128 3.872 13 C -0.549 4.549 14 H 0.061 0.939 15 C -0.173 4.173 16 N -0.559 5.559 17 Si 0.767 3.233 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.206 1.206 21 C -0.006 4.006 22 C -0.072 4.072 23 C -0.071 4.071 24 N -0.166 5.166 25 C -0.159 4.159 26 C -0.121 4.121 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.125 0.875 32 H 0.265 0.735 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.680 -9.387 -9.374 14.853 hybrid contribution -0.287 -0.002 1.024 1.064 sum -6.966 -9.389 -8.349 14.367 Atomic orbital electron populations 1.20799 0.88988 1.03502 1.03213 1.20284 0.97777 0.92619 1.00125 1.21108 0.92890 0.99055 1.00187 1.21136 0.95306 0.97197 1.02035 1.17923 0.82021 0.94866 1.02020 1.43086 1.04717 1.30812 1.51029 1.20486 0.89423 0.82683 0.80964 1.91043 1.69783 1.37836 1.35138 1.19837 0.87933 0.82580 0.80164 1.90670 1.69564 1.39641 1.43222 1.48064 1.06886 1.21918 1.52287 1.19494 0.91873 0.83559 0.92310 1.21369 1.34742 1.00992 0.97826 0.93860 1.25362 0.95719 0.95074 1.01187 1.69973 1.40151 1.08183 1.37630 0.85844 0.77789 0.77824 0.81838 1.19700 1.21301 1.20635 1.21445 0.78394 1.02151 0.98574 1.19677 0.80251 1.05328 1.01937 1.29110 0.94945 0.91397 0.91634 1.81225 1.14273 1.10790 1.10277 1.21201 0.95174 0.96318 1.03255 1.21189 0.92952 0.98696 0.99223 0.89923 0.90166 0.91561 0.85110 0.87495 0.73500 0.94515 0.93855 0.92989 0.88798 0.89012 0.85482 0.85225 0.83334 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.89 16 2 C -0.11 -2.34 5.88 -19.84 -0.12 -2.46 16 3 C -0.11 -3.10 9.69 22.25 0.22 -2.88 16 4 C -0.14 -4.46 8.65 22.40 0.19 -4.27 16 5 C 0.13 3.73 6.24 38.21 0.24 3.97 16 6 N -0.65 -19.58 5.32 -304.84 -1.62 -21.20 16 7 C 0.48 18.22 7.42 87.24 0.65 18.87 16 8 O -0.47 -21.46 9.96 -3.32 -0.03 -21.49 16 9 C 0.51 18.49 7.68 87.24 0.67 19.16 16 10 O -0.55 -19.12 16.05 -3.27 -0.05 -19.18 16 11 N -0.56 -20.24 2.47 -827.85 -2.04 -22.29 16 12 C 0.25 11.06 4.77 85.63 0.41 11.47 16 13 C -0.51 -26.29 7.74 25.60 0.20 -26.09 16 14 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 15 C 0.03 1.39 5.46 84.66 0.46 1.85 16 16 N -0.92 -51.49 13.29 21.45 0.28 -51.21 16 17 Si 0.94 43.72 29.54 68.60 2.03 45.74 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 C 0.12 3.34 5.35 86.38 0.46 3.80 16 22 C -0.03 -0.68 6.03 28.79 0.17 -0.51 16 23 C 0.25 6.26 15.43 89.44 1.38 7.64 16 24 N -0.49 -15.05 18.54 20.01 0.37 -14.68 16 25 C -0.14 -3.21 9.97 22.40 0.22 -2.98 16 26 C -0.10 -2.05 9.69 22.25 0.22 -1.83 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.08 0.94 8.08 -2.38 -0.02 0.92 16 29 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.11 4.07 6.54 -2.91 -0.02 4.06 16 32 H 0.43 10.55 8.30 -92.71 -0.77 9.78 16 33 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 34 H 0.04 2.16 5.92 -2.39 -0.01 2.14 16 35 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 36 H 0.09 2.68 8.11 -2.39 -0.02 2.67 16 37 H 0.09 2.53 7.37 -2.39 -0.02 2.52 16 38 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 41 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -67.23 361.66 5.32 -61.91 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.30 Total: 17.54 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 6.09 Total: 24.85 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -3.01 Total: -109.37 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.09 Total: -40.67 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -67.23 5.32 -61.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116733971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.251 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds