Wall clock time and date at job start Tue Mar 31 2020 11:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38164 * 120.03188 * 2 1 4 4 C 1.38243 * 120.05908 * 180.29845 * 3 2 1 5 5 C 1.38283 * 120.10859 * 359.67979 * 4 3 2 6 6 C 1.38124 * 120.05920 * 0.02562 * 5 4 3 7 7 C 1.38721 * 120.02808 * 179.68158 * 2 1 3 8 8 O 1.35900 * 120.05144 * 359.97438 * 7 2 1 9 9 C 1.42899 * 116.99401 * 179.72649 * 8 7 2 10 10 C 1.50702 * 109.46876 * 179.97438 * 9 8 7 11 11 O 1.21293 * 120.00255 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.40163 * 120.00089 * 180.27440 * 12 10 9 14 14 C 1.40404 * 125.97284 * 359.71962 * 13 12 10 15 15 C 1.35231 * 107.86945 * 179.86211 * 14 13 12 16 16 N 1.34968 * 107.86038 * 0.39204 * 15 14 13 17 17 C 1.46498 * 125.97988 * 179.74975 * 16 15 14 18 18 C 1.50696 * 109.47462 * 124.97621 * 17 16 15 19 19 H 1.07997 * 120.00174 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00084 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99938 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00181 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47128 * 89.99523 * 22 20 18 24 24 H 1.48498 * 109.47205 * 209.99710 * 22 20 18 25 25 H 1.48503 * 109.46840 * 329.99379 * 22 20 18 26 26 N 1.31214 * 125.96976 * 180.02562 * 13 12 10 27 27 H 1.09003 * 109.47420 * 270.31687 * 1 2 3 28 28 H 1.09003 * 109.47159 * 30.32328 * 1 2 3 29 29 H 1.09004 * 109.47042 * 150.32122 * 1 2 3 30 30 H 1.08008 * 119.96775 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.94574 * 179.70034 * 4 3 2 32 32 H 1.08008 * 119.96950 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.02948 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47206 * 60.00258 * 9 8 7 35 35 H 1.09000 * 109.47808 * 300.00276 * 9 8 7 36 36 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 37 37 H 1.08007 * 126.06414 * 359.97438 * 14 13 12 38 38 H 1.07995 * 126.07309 * 180.14746 * 15 14 13 39 39 H 1.09004 * 109.47617 * 244.98130 * 17 16 15 40 40 H 1.09001 * 109.46800 * 4.97696 * 17 16 15 41 41 H 0.97009 * 119.99876 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2751 0.0009 -0.0058 6 6 3.5886 -1.1976 0.0003 7 6 2.2012 -1.2010 0.0067 8 8 1.5233 -2.3789 0.0137 9 6 2.3033 -3.5762 0.0143 10 6 1.3871 -4.7726 0.0231 11 8 0.1844 -4.6154 0.0280 12 7 1.9040 -6.0173 0.0195 13 6 1.0518 -7.1301 0.0219 14 6 -0.3518 -7.0940 0.0336 15 6 -0.7997 -8.3700 0.0289 16 7 0.2753 -9.1860 0.0236 17 6 0.2440 -10.6507 0.0227 18 6 1.0425 -11.1695 -1.1453 19 1 1.5254 -10.4775 -1.8193 20 6 1.1574 -12.5277 -1.3529 21 7 1.8538 -12.9804 -2.3726 22 14 0.3227 -13.7248 -0.1868 23 1 -1.0486 -14.0173 -0.6756 24 1 1.1061 -14.9849 -0.1267 25 1 0.2473 -13.1238 1.1691 26 7 1.4263 -8.3876 0.0194 27 1 -0.3634 0.0057 1.0277 28 1 -0.3633 0.8871 -0.5189 29 1 -0.3633 -0.8929 -0.5089 30 1 1.6584 2.1315 -0.0004 31 1 4.1195 2.1329 -0.0111 32 1 5.3552 0.0040 -0.0103 33 1 4.1313 -2.1314 0.0011 34 1 2.9362 -3.5971 0.9015 35 1 2.9283 -3.6032 -0.8784 36 1 2.8658 -6.1431 0.0154 37 1 -0.9649 -6.2049 0.0426 38 1 -1.8339 -8.6808 0.0330 39 1 0.6748 -11.0240 0.9518 40 1 -0.7877 -10.9919 -0.0623 41 1 1.9350 -13.9360 -2.5184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117711229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:59 Heat of formation + Delta-G solvation = 43.374157 kcal Electronic energy + Delta-G solvation = -24351.668314 eV Core-core repulsion = 20620.400574 eV Total energy + Delta-G solvation = -3731.267740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97205 -40.51432 -39.27939 -37.53703 -34.89883 -33.36553 -33.10377 -31.48381 -30.51403 -29.53397 -28.90426 -27.09291 -26.84119 -23.34756 -22.46553 -21.87140 -21.54606 -20.25671 -19.70805 -18.41926 -17.34696 -17.06028 -16.68991 -16.48271 -16.11867 -15.89410 -15.33322 -14.98001 -14.65545 -14.40449 -14.22275 -13.81685 -13.46725 -13.41435 -13.17640 -12.91175 -12.57260 -12.50959 -12.39540 -12.37689 -12.15327 -11.62503 -11.44014 -11.21448 -11.17061 -10.80281 -10.70985 -10.13448 -10.04999 -9.72101 -9.56855 -9.15147 -8.79468 -8.43253 -8.27408 -7.61210 -6.26292 -4.28908 0.99677 1.12076 2.12827 2.13069 2.76693 3.10868 3.15314 3.20410 3.24271 3.43407 3.57066 3.73907 4.20352 4.32790 4.45627 4.55859 4.63627 4.71152 4.75594 4.99050 5.01248 5.04016 5.26868 5.38275 5.39494 5.52594 5.58039 5.62051 5.98811 6.01261 6.07275 6.15019 6.22597 6.31211 6.37028 6.42597 6.51229 6.61612 7.03140 7.19731 7.23803 7.47183 7.75368 8.06211 8.29643 8.48115 8.82953 9.28423 10.86298 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.002086 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.030421 B =13418.076402 C =13958.800706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.111 4.111 3 C -0.085 4.085 4 C -0.155 4.155 5 C -0.086 4.086 6 C -0.207 4.207 7 C 0.128 3.872 8 O -0.284 6.284 9 C 0.047 3.953 10 C 0.522 3.478 11 O -0.493 6.493 12 N -0.627 5.627 13 C 0.260 3.740 14 C -0.283 4.283 15 C 0.053 3.947 16 N -0.317 5.317 17 C 0.231 3.769 18 C -0.535 4.535 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.887 5.887 22 Si 0.873 3.127 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.294 5.294 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.413 0.587 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 25.644 6.452 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.103 4.103 4 C -0.173 4.173 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.083 3.917 8 O -0.197 6.197 9 C -0.032 4.032 10 C 0.305 3.695 11 O -0.365 6.365 12 N -0.276 5.276 13 C 0.007 3.993 14 C -0.315 4.315 15 C -0.097 4.097 16 N -0.099 5.099 17 C 0.113 3.887 18 C -0.574 4.574 19 H 0.104 0.896 20 C -0.128 4.128 21 N -0.524 5.524 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.125 5.125 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.249 0.751 37 H 0.179 0.821 38 H 0.188 0.812 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.999 24.628 6.352 25.512 hybrid contribution -0.111 -0.486 0.417 0.650 sum 1.888 24.142 6.769 25.144 Atomic orbital electron populations 1.20655 0.90226 1.03116 1.02551 1.19321 0.96826 0.90145 1.04925 1.20911 0.94148 0.96762 0.98457 1.21057 0.94231 0.98134 1.03927 1.20933 0.99854 0.91830 0.97841 1.21280 0.92804 0.99739 1.08755 1.18871 0.90424 0.85358 0.97064 1.86136 1.33914 1.11121 1.88499 1.22357 0.93392 0.83120 1.04354 1.19892 0.89226 0.82949 0.77388 1.90695 1.14791 1.85014 1.45951 1.42170 1.09780 1.02677 1.72969 1.19014 0.89963 0.86749 1.03584 1.21552 0.92615 0.97740 1.19556 1.22570 0.94313 0.90415 1.02353 1.48638 1.01526 1.07342 1.52406 1.20070 0.98848 0.70157 0.99666 1.21095 1.32823 0.93109 1.10323 0.89643 1.24838 0.94842 0.97844 0.95254 1.69874 1.39646 1.14425 1.28459 0.86902 0.80082 0.81365 0.81727 1.19685 1.20511 1.18866 1.77396 1.08842 0.98795 1.27448 0.91243 0.91727 0.90579 0.85368 0.85927 0.85751 0.85267 0.88511 0.88434 0.75123 0.82055 0.81247 0.93958 0.93247 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.79 36.00 0.35 -0.63 16 2 C -0.11 -1.09 5.89 -104.47 -0.62 -1.71 16 3 C -0.08 -0.68 9.70 -39.61 -0.38 -1.06 16 4 C -0.16 -1.14 10.04 -39.56 -0.40 -1.54 16 5 C -0.09 -0.65 10.04 -39.61 -0.40 -1.05 16 6 C -0.21 -1.76 9.04 -39.43 -0.36 -2.11 16 7 C 0.13 1.34 6.66 -39.21 -0.26 1.08 16 8 O -0.28 -3.37 8.72 -39.34 -0.34 -3.72 16 9 C 0.05 0.44 5.22 36.01 0.19 0.63 16 10 C 0.52 7.13 7.87 -10.98 -0.09 7.05 16 11 O -0.49 -8.61 13.63 -14.36 -0.20 -8.81 16 12 N -0.63 -9.00 5.45 -11.13 -0.06 -9.06 16 13 C 0.26 5.02 8.11 -154.39 -1.25 3.76 16 14 C -0.28 -5.41 9.60 -39.84 -0.38 -5.79 16 15 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 16 N -0.32 -7.06 3.67 -62.57 -0.23 -7.29 16 17 C 0.23 5.40 5.33 -5.20 -0.03 5.37 16 18 C -0.54 -14.93 9.79 -34.44 -0.34 -15.26 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 22 Si 0.87 19.91 27.47 -169.99 -4.67 15.24 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 26 N -0.29 -6.56 12.42 31.44 0.39 -6.17 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.08 0.81 7.53 -51.93 -0.39 0.42 16 30 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 34 H 0.10 0.64 7.66 -51.93 -0.40 0.24 16 35 H 0.10 0.68 7.66 -51.93 -0.40 0.28 16 36 H 0.41 4.54 8.82 -40.82 -0.36 4.18 16 37 H 0.16 3.01 5.92 -52.48 -0.31 2.70 16 38 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 39 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 40 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -35.11 353.48 -8.33 -43.44 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.08 Total: 5.04 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -4.25 Total: -8.44 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.87 Total: -48.08 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.54 Total: -12.52 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.11 -8.33 -43.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.817 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds