Wall clock time and date at job start Tue Mar 31 2020 11:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38268 * 119.93982 * 2 1 4 4 C 1.38150 * 120.05323 * 179.97438 * 3 2 1 5 5 C 1.38734 * 119.94514 * 0.02562 * 4 3 2 6 6 O 1.35894 * 120.05673 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00490 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47403 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00012 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 7 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 C 1.38733 * 119.88696 * 0.26456 * 5 4 3 26 26 C 1.38142 * 119.94245 * 359.43677 * 25 5 4 27 27 H 1.08999 * 109.47529 * 90.00157 * 1 2 3 28 28 H 1.09007 * 109.46967 * 209.99953 * 1 2 3 29 29 H 1.09000 * 109.47664 * 329.99680 * 1 2 3 30 30 H 1.07992 * 119.97374 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.02400 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46875 * 59.99557 * 7 6 5 33 33 H 1.09006 * 109.46878 * 300.00245 * 7 6 5 34 34 H 0.97003 * 120.00166 * 0.02562 * 10 8 7 35 35 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 36 36 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 37 37 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 38 38 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 39 39 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 40 40 H 1.07999 * 120.02404 * 179.72240 * 25 5 4 41 41 H 1.08008 * 119.97475 * 180.26988 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0002 0.0016 7 6 6.2813 -1.2730 0.0021 8 6 7.7752 -1.0754 0.0026 9 8 8.2387 0.0454 0.0021 10 7 8.5962 -2.1443 0.0037 11 6 9.9857 -1.9606 0.0036 12 6 10.6544 -0.7260 0.0030 13 6 11.9839 -0.9741 0.0090 14 7 12.1551 -2.3129 0.0045 15 6 13.4402 -3.0162 0.0058 16 6 13.4889 -3.9715 1.1703 17 1 12.6466 -4.0475 1.8420 18 6 14.6087 -4.7485 1.3783 19 7 15.6323 -4.6599 0.5573 20 14 14.6688 -5.9332 2.8213 21 1 15.9691 -6.6504 2.8192 22 1 14.5234 -5.1754 4.0902 23 1 13.5615 -6.9155 2.7017 24 7 10.8891 -2.9123 0.0050 25 6 3.5786 -1.2007 -0.0056 26 6 2.1972 -1.1980 0.0002 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6557 2.1326 -0.0004 31 1 4.1171 2.1371 0.0001 32 1 5.9890 -1.8300 -0.8881 33 1 5.9877 -1.8300 0.8919 34 1 8.2255 -3.0407 0.0037 35 1 10.1896 0.2489 0.0029 36 1 12.7691 -0.2327 0.0143 37 1 14.2504 -2.2925 0.0956 38 1 13.5511 -3.5721 -0.9251 39 1 15.6011 -4.0449 -0.1922 40 1 4.1174 -2.1367 -0.0101 41 1 1.6558 -2.1326 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117715547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:02 Heat of formation + Delta-G solvation = 33.782848 kcal Electronic energy + Delta-G solvation = -24054.822994 eV Core-core repulsion = 20323.139343 eV Total energy + Delta-G solvation = -3731.683651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96989 -40.48352 -39.30772 -37.79017 -34.95302 -33.73672 -32.44969 -31.44000 -31.10715 -29.48666 -29.02721 -26.59295 -26.07347 -23.53636 -22.98115 -21.97677 -21.37241 -20.48474 -19.74437 -18.60946 -17.38837 -17.22764 -16.69892 -16.48352 -16.06216 -15.68760 -15.19107 -14.86467 -14.61953 -14.29163 -14.11461 -13.89432 -13.84078 -13.80242 -13.27988 -13.02086 -12.61860 -12.48158 -12.43899 -12.23679 -11.89510 -11.86493 -11.24074 -11.20732 -11.18979 -10.84854 -10.55391 -10.18458 -10.13860 -9.71853 -9.35956 -9.04593 -8.61195 -8.39731 -8.28605 -7.60695 -6.61153 -4.35486 0.98391 1.06311 2.10379 2.11743 2.76277 3.14059 3.35857 3.37254 3.39127 3.55198 3.56308 3.73735 4.29546 4.38483 4.47296 4.49482 4.56467 4.65656 4.68285 4.89641 4.98886 5.12533 5.17786 5.24094 5.36029 5.38936 5.54390 5.63215 5.68758 5.93153 5.99476 6.07091 6.25696 6.33278 6.37229 6.45930 6.54067 6.70511 7.01797 7.21419 7.39048 7.64684 7.77464 8.04233 8.30262 8.46781 8.57814 9.32755 10.76459 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.001976 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.540532 B =14165.268634 C =14833.612981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.128 4.128 3 C -0.081 4.081 4 C -0.144 4.144 5 C 0.126 3.874 6 O -0.288 6.288 7 C 0.048 3.952 8 C 0.521 3.479 9 O -0.493 6.493 10 N -0.627 5.627 11 C 0.259 3.741 12 C -0.285 4.285 13 C 0.052 3.948 14 N -0.316 5.316 15 C 0.249 3.751 16 C -0.609 4.609 17 H 0.063 0.937 18 C 0.023 3.977 19 N -0.904 5.904 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.299 5.299 25 C -0.207 4.207 26 C -0.080 4.080 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.413 0.587 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.267 0.733 40 H 0.130 0.870 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.420 8.131 -2.073 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.099 4.099 4 C -0.162 4.162 5 C 0.080 3.920 6 O -0.200 6.200 7 C -0.031 4.031 8 C 0.305 3.695 9 O -0.364 6.364 10 N -0.276 5.276 11 C 0.006 3.994 12 C -0.316 4.316 13 C -0.097 4.097 14 N -0.097 5.097 15 C 0.131 3.869 16 C -0.647 4.647 17 H 0.082 0.918 18 C -0.182 4.182 19 N -0.539 5.539 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.130 5.130 25 C -0.226 4.226 26 C -0.098 4.098 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.248 0.752 35 H 0.179 0.821 36 H 0.186 0.814 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.680 6.687 -1.331 26.570 hybrid contribution -1.220 1.220 -0.783 1.895 sum -26.900 7.907 -2.114 28.118 Atomic orbital electron populations 1.20722 0.91059 1.02667 1.02171 1.19858 0.96279 0.93084 1.03571 1.20865 0.92874 0.97866 0.98251 1.20469 0.93722 0.96503 1.05521 1.19053 0.81807 0.94439 0.96655 1.86147 1.16306 1.28990 1.88565 1.22346 0.90316 0.86116 1.04336 1.19906 0.87509 0.84696 0.77428 1.90700 1.76369 1.23451 1.45894 1.42167 1.02535 1.09875 1.73022 1.19013 0.83416 0.93282 1.03729 1.21546 0.91657 0.98668 1.19726 1.22580 0.97906 0.86908 1.02334 1.48806 1.05362 1.03652 1.51908 1.19786 0.74817 0.93018 0.99318 1.22096 1.05283 1.24950 1.12395 0.91834 1.25930 0.91692 0.98406 1.02140 1.70854 1.31483 1.36603 1.14969 0.83415 0.76268 0.75643 0.74289 1.20498 1.21224 1.21140 1.77351 0.88357 1.19578 1.27720 1.21278 0.95537 0.96992 1.08760 1.20830 0.93217 0.97774 0.97974 0.91408 0.91701 0.91652 0.85309 0.84867 0.88489 0.88443 0.75182 0.82097 0.81355 0.93530 0.94692 0.92265 0.85260 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.01 36.00 0.36 -0.19 16 2 C -0.13 -0.95 5.88 -104.60 -0.62 -1.56 16 3 C -0.08 -0.63 9.69 -39.60 -0.38 -1.01 16 4 C -0.14 -1.37 9.99 -39.43 -0.39 -1.76 16 5 C 0.13 1.30 6.69 -39.22 -0.26 1.04 16 6 O -0.29 -3.48 9.67 -39.32 -0.38 -3.86 16 7 C 0.05 0.45 5.22 36.00 0.19 0.64 16 8 C 0.52 7.25 7.87 -10.99 -0.09 7.17 16 9 O -0.49 -8.83 13.63 -14.36 -0.20 -9.03 16 10 N -0.63 -9.11 5.45 -11.13 -0.06 -9.17 16 11 C 0.26 5.09 8.11 -154.39 -1.25 3.83 16 12 C -0.28 -5.61 9.61 -39.83 -0.38 -6.00 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 14 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16 15 C 0.25 6.24 5.57 -5.19 -0.03 6.21 16 16 C -0.61 -16.99 9.24 -34.44 -0.32 -17.31 16 17 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 18 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 19 N -0.90 -26.13 13.65 55.43 0.76 -25.37 16 20 Si 1.08 24.71 29.90 -169.99 -5.08 19.62 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 N -0.30 -6.80 12.42 31.44 0.39 -6.41 16 25 C -0.21 -1.73 9.04 -39.43 -0.36 -2.08 16 26 C -0.08 -0.60 9.69 -39.61 -0.38 -0.98 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.10 0.64 7.65 -51.93 -0.40 0.25 16 33 H 0.10 0.66 7.67 -51.93 -0.40 0.27 16 34 H 0.41 4.54 8.82 -40.82 -0.36 4.18 16 35 H 0.16 3.10 5.92 -52.49 -0.31 2.79 16 36 H 0.17 2.72 8.06 -52.48 -0.42 2.30 16 37 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16 39 H 0.27 7.55 7.22 -40.82 -0.29 7.25 16 40 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 41 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -35.02 357.10 -8.71 -43.73 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.08 Total: 3.26 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -4.21 Total: -10.62 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.86 Total: -48.48 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.58 Total: -12.89 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.02 -8.71 -43.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117715547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.508 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds