Wall clock time and date at job start Tue Mar 31 2020 11:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38268 * 119.93982 * 2 1 4 4 C 1.38150 * 120.05323 * 179.97438 * 3 2 1 5 5 C 1.38734 * 119.94514 * 0.02562 * 4 3 2 6 6 O 1.35894 * 120.05673 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00490 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47403 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00012 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 7 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 C 1.38733 * 119.88696 * 0.26456 * 5 4 3 26 26 C 1.38142 * 119.94245 * 359.43677 * 25 5 4 27 27 H 1.08999 * 109.47529 * 90.00157 * 1 2 3 28 28 H 1.09007 * 109.46967 * 209.99953 * 1 2 3 29 29 H 1.09000 * 109.47664 * 329.99680 * 1 2 3 30 30 H 1.07992 * 119.97374 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.02400 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46875 * 59.99557 * 7 6 5 33 33 H 1.09006 * 109.46878 * 300.00245 * 7 6 5 34 34 H 0.97003 * 120.00166 * 0.02562 * 10 8 7 35 35 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 36 36 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 37 37 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 38 38 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 39 39 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 40 40 H 1.07999 * 120.02404 * 179.72240 * 25 5 4 41 41 H 1.08008 * 119.97475 * 180.26988 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0002 0.0016 7 6 6.2813 -1.2730 0.0021 8 6 7.7752 -1.0754 0.0026 9 8 8.2387 0.0454 0.0021 10 7 8.5962 -2.1443 0.0037 11 6 9.9857 -1.9606 0.0036 12 6 10.6544 -0.7260 0.0030 13 6 11.9839 -0.9741 0.0090 14 7 12.1551 -2.3129 0.0045 15 6 13.4402 -3.0162 0.0058 16 6 13.4889 -3.9715 1.1703 17 1 12.6466 -4.0475 1.8420 18 6 14.6087 -4.7485 1.3783 19 7 15.6323 -4.6599 0.5573 20 14 14.6688 -5.9332 2.8213 21 1 15.9691 -6.6504 2.8192 22 1 14.5234 -5.1754 4.0902 23 1 13.5615 -6.9155 2.7017 24 7 10.8891 -2.9123 0.0050 25 6 3.5786 -1.2007 -0.0056 26 6 2.1972 -1.1980 0.0002 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6557 2.1326 -0.0004 31 1 4.1171 2.1371 0.0001 32 1 5.9890 -1.8300 -0.8881 33 1 5.9877 -1.8300 0.8919 34 1 8.2255 -3.0407 0.0037 35 1 10.1896 0.2489 0.0029 36 1 12.7691 -0.2327 0.0143 37 1 14.2504 -2.2925 0.0956 38 1 13.5511 -3.5721 -0.9251 39 1 15.6011 -4.0449 -0.1922 40 1 4.1174 -2.1367 -0.0101 41 1 1.6558 -2.1326 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117715547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:01 Heat of formation + Delta-G solvation = 12.774430 kcal Electronic energy + Delta-G solvation = -24055.733988 eV Core-core repulsion = 20323.139343 eV Total energy + Delta-G solvation = -3732.594644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37793 -41.39511 -40.41434 -38.52805 -36.47177 -35.58947 -33.12531 -32.75112 -31.98146 -31.09304 -30.01457 -28.06747 -26.96612 -25.17245 -23.99938 -23.06994 -22.31614 -21.85543 -21.08881 -19.35604 -19.25014 -18.58062 -17.87805 -17.54920 -17.08262 -16.63911 -16.26988 -16.15922 -15.69680 -15.53911 -15.26793 -15.20830 -14.96889 -14.46901 -14.40174 -14.18715 -13.97237 -13.83711 -13.66435 -13.24710 -13.10734 -12.86368 -12.61724 -12.40546 -12.09783 -11.95726 -11.84536 -11.81189 -11.69090 -11.03382 -10.99075 -10.70044 -9.94979 -9.89581 -9.27189 -9.02195 -8.78869 -6.56876 0.39740 0.44586 0.78088 0.98535 1.29374 1.51345 1.57512 1.78671 1.89321 2.07742 2.47767 2.58537 2.79638 3.00604 3.32792 3.81223 3.88197 3.94677 4.01927 4.04041 4.10431 4.12341 4.38406 4.47653 4.53679 4.61633 4.66882 4.76283 4.78358 4.85510 4.90831 5.03096 5.12251 5.18294 5.37074 5.40429 5.53475 5.70834 5.75737 5.83827 5.89152 6.10657 6.24132 6.37956 6.39713 6.83154 6.97377 7.18888 8.57727 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.001976 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.540532 B =14165.268634 C =14833.612981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C -0.086 4.086 4 C -0.165 4.165 5 C 0.102 3.898 6 O -0.319 6.319 7 C 0.055 3.945 8 C 0.522 3.478 9 O -0.536 6.536 10 N -0.616 5.616 11 C 0.268 3.732 12 C -0.293 4.293 13 C 0.057 3.943 14 N -0.342 5.342 15 C 0.259 3.741 16 C -0.622 4.622 17 H 0.046 0.954 18 C -0.019 4.019 19 N -0.923 5.923 20 Si 1.120 2.880 21 H -0.276 1.276 22 H -0.272 1.272 23 H -0.274 1.274 24 N -0.340 5.340 25 C -0.208 4.208 26 C -0.086 4.086 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.430 0.570 35 H 0.167 0.833 36 H 0.202 0.798 37 H 0.054 0.946 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.153 0.847 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.883 7.442 -1.476 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.104 4.104 4 C -0.183 4.183 5 C 0.057 3.943 6 O -0.233 6.233 7 C -0.023 4.023 8 C 0.308 3.692 9 O -0.410 6.410 10 N -0.268 5.268 11 C 0.013 3.987 12 C -0.324 4.324 13 C -0.091 4.091 14 N -0.124 5.124 15 C 0.139 3.861 16 C -0.660 4.660 17 H 0.065 0.935 18 C -0.219 4.219 19 N -0.559 5.559 20 Si 0.941 3.059 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.199 1.199 24 N -0.170 5.170 25 C -0.227 4.227 26 C -0.104 4.104 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.164 0.836 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.269 0.731 35 H 0.184 0.816 36 H 0.219 0.781 37 H 0.072 0.928 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.170 0.830 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.193 6.000 -0.749 28.834 hybrid contribution -0.622 1.549 -1.015 1.953 sum -28.815 7.549 -1.764 29.839 Atomic orbital electron populations 1.20772 0.89285 1.03574 1.02902 1.20241 0.97696 0.92931 1.02352 1.21120 0.92300 0.99129 0.97881 1.20651 0.94672 0.96453 1.06566 1.19255 0.81145 0.95490 0.98397 1.86081 1.17491 1.30391 1.89289 1.22463 0.86385 0.85953 1.07506 1.20814 0.89286 0.83627 0.75442 1.90675 1.77462 1.25159 1.47709 1.42274 1.00497 1.11393 1.72637 1.19370 0.85326 0.92712 1.01253 1.21735 0.91761 0.98992 1.19944 1.23176 0.99092 0.86289 1.00579 1.48590 1.04953 1.04568 1.54241 1.19450 0.76309 0.92794 0.97520 1.22286 1.04812 1.25920 1.13012 0.93536 1.27283 0.91185 0.99553 1.03836 1.70949 1.32208 1.37207 1.15509 0.82875 0.76717 0.74268 0.72053 1.20062 1.19698 1.19920 1.77268 0.88719 1.20992 1.30059 1.21554 0.96071 0.97091 1.07953 1.21195 0.93158 0.98832 0.97249 0.90660 0.90699 0.90926 0.83566 0.85542 0.85024 0.85151 0.73088 0.81602 0.78146 0.92821 0.96390 0.92973 0.82971 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 71.23 0.71 -0.08 16 2 C -0.13 -1.67 5.88 -19.85 -0.12 -1.79 16 3 C -0.09 -1.25 9.69 22.26 0.22 -1.03 16 4 C -0.16 -3.11 9.99 22.37 0.22 -2.89 16 5 C 0.10 2.00 6.69 22.51 0.15 2.15 16 6 O -0.32 -7.42 9.67 -73.32 -0.71 -8.13 16 7 C 0.05 0.91 5.22 71.23 0.37 1.28 16 8 C 0.52 13.88 7.87 87.66 0.69 14.57 16 9 O -0.54 -19.13 13.63 15.97 0.22 -18.91 16 10 N -0.62 -17.13 5.45 -307.52 -1.68 -18.81 16 11 C 0.27 10.46 8.11 133.32 1.08 11.54 16 12 C -0.29 -11.49 9.61 22.11 0.21 -11.28 16 13 C 0.06 2.24 11.44 83.52 0.96 3.20 16 14 N -0.34 -15.97 3.67 -351.83 -1.29 -17.26 16 15 C 0.26 13.23 5.57 85.64 0.48 13.70 16 16 C -0.62 -35.16 9.24 25.60 0.24 -34.93 16 17 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 18 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 19 N -0.92 -53.68 13.65 21.45 0.29 -53.39 16 20 Si 1.12 49.23 29.90 68.60 2.05 51.28 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 N -0.34 -15.55 12.42 -54.45 -0.68 -16.23 16 25 C -0.21 -2.95 9.04 22.37 0.20 -2.75 16 26 C -0.09 -1.06 9.69 22.25 0.22 -0.85 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.41 8.08 -2.38 -0.02 0.39 16 29 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 30 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.13 1.28 7.65 -2.39 -0.02 1.27 16 33 H 0.13 1.32 7.67 -2.38 -0.02 1.30 16 34 H 0.43 8.65 8.82 -92.71 -0.82 7.83 16 35 H 0.17 6.38 5.92 -2.91 -0.02 6.36 16 36 H 0.20 6.25 8.06 -2.91 -0.02 6.23 16 37 H 0.05 2.64 7.94 -2.39 -0.02 2.62 16 38 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 39 H 0.26 15.00 7.22 -92.71 -0.67 14.34 16 40 H 0.15 1.30 6.30 -2.91 -0.02 1.28 16 41 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -77.30 357.10 4.65 -72.65 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.35 Total: 18.56 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 6.09 Total: -9.76 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -3.35 Total: -105.69 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.49 Total: -27.04 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.28 kcal Total: -77.30 4.65 -72.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117715547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.425 kcal (2) G-P(sol) polarization free energy of solvation -77.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds