Wall clock time and date at job start Tue Mar 31 2020 10:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35241 * 107.86079 * 179.87198 * 11 10 9 13 13 C 1.40409 * 107.86602 * 0.39163 * 12 11 10 14 14 N 1.40159 * 125.97033 * 179.73843 * 13 12 11 15 15 C 1.34777 * 119.99983 * 0.02562 * 14 13 12 16 16 O 1.21290 * 120.00252 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99736 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47220 * 179.97438 * 17 15 14 19 19 O 1.42898 * 109.47505 * 180.02562 * 18 17 15 20 20 C 1.35907 * 117.00235 * 180.02562 * 19 18 17 21 21 C 1.38725 * 120.05386 * 359.72042 * 20 19 18 22 22 C 1.38143 * 119.94248 * 179.74374 * 21 20 19 23 23 C 1.38266 * 120.05484 * 0.51149 * 22 21 20 24 24 C 1.38263 * 120.11360 * 359.76666 * 23 22 21 25 25 C 1.38149 * 120.05170 * 359.97343 * 24 23 22 26 26 N 1.31219 * 108.05249 * 359.75456 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08003 * 126.06884 * 359.97438 * 11 10 9 31 31 H 1.08002 * 126.06490 * 180.12781 * 12 11 10 32 32 H 0.97003 * 119.99851 * 179.97438 * 14 13 12 33 33 H 1.09001 * 109.47309 * 299.99796 * 17 15 14 34 34 H 1.09006 * 109.47462 * 59.99731 * 17 15 14 35 35 H 1.09002 * 109.47236 * 299.99736 * 18 17 15 36 36 H 1.09003 * 109.47491 * 59.99825 * 18 17 15 37 37 H 1.08005 * 120.02755 * 0.02562 * 21 20 19 38 38 H 1.07999 * 119.97292 * 180.27535 * 22 21 20 39 39 H 1.08001 * 119.94626 * 179.74272 * 23 22 21 40 40 H 1.07996 * 119.97769 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.02719 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2631 -5.4436 0.5306 13 6 3.8671 -4.9129 -0.6205 14 7 4.9610 -5.4617 -1.3037 15 6 5.5273 -6.6026 -0.8631 16 8 5.0907 -7.1542 0.1250 17 6 6.7030 -7.1928 -1.5980 18 6 7.1515 -8.4760 -0.8957 19 8 8.2668 -9.0355 -1.5923 20 6 8.7903 -10.1869 -1.0951 21 6 8.2455 -10.7631 0.0432 22 6 8.7761 -11.9363 0.5436 23 6 9.8560 -12.5306 -0.0830 24 6 10.4044 -11.9551 -1.2143 25 6 9.8740 -10.7848 -1.7217 26 7 3.2287 -3.8133 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5913 -4.7503 1.7305 31 1 3.5589 -6.3457 1.0455 32 1 5.3099 -5.0207 -2.0941 33 1 6.4128 -7.4219 -2.6234 34 1 7.5245 -6.4764 -1.6044 35 1 7.4419 -8.2466 0.1295 36 1 6.3302 -9.1926 -0.8890 37 1 7.4044 -10.2973 0.5351 38 1 8.3496 -12.3877 1.4271 39 1 10.2720 -13.4455 0.3121 40 1 11.2475 -12.4214 -1.7022 41 1 10.3029 -10.3355 -2.6051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117718026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:06 Heat of formation + Delta-G solvation = 29.633432 kcal Electronic energy + Delta-G solvation = -23969.612683 eV Core-core repulsion = 20237.749100 eV Total energy + Delta-G solvation = -3731.863583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90069 -40.41635 -39.43379 -37.70680 -34.97995 -33.74087 -32.61547 -31.30529 -30.84151 -29.81165 -29.45522 -26.51761 -25.14231 -23.20692 -22.81229 -22.20837 -21.32349 -20.37921 -19.71730 -18.67220 -17.23215 -16.98174 -16.79528 -16.74129 -16.17104 -15.94664 -15.38183 -15.16011 -14.74505 -14.25845 -13.93327 -13.82827 -13.82019 -13.64735 -13.40336 -13.16238 -12.52608 -12.41558 -12.17758 -12.12257 -11.92080 -11.87241 -11.19943 -11.11897 -11.10145 -10.84699 -10.54858 -10.20211 -10.16536 -9.76529 -9.34236 -9.04696 -8.61241 -8.53945 -8.28606 -7.60605 -6.61634 -4.35948 1.00193 1.11330 2.13388 2.34111 2.76652 3.03647 3.34530 3.38583 3.46208 3.55117 3.56744 3.77842 4.27608 4.37840 4.51717 4.56303 4.58828 4.70132 4.81040 5.00061 5.05330 5.09473 5.12294 5.29506 5.34636 5.40167 5.43255 5.64279 5.66563 5.97562 6.07766 6.09770 6.19909 6.33079 6.42169 6.43471 6.52882 6.70038 7.07026 7.24458 7.37829 7.64392 7.77186 8.05503 8.30460 8.47454 8.57774 9.32369 10.76053 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.036038 B = 0.001869 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.775938 B =14977.345816 C =15406.116565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.285 4.285 13 C 0.256 3.744 14 N -0.628 5.628 15 C 0.526 3.474 16 O -0.520 6.520 17 C -0.136 4.136 18 C 0.075 3.925 19 O -0.317 6.317 20 C 0.133 3.867 21 C -0.208 4.208 22 C -0.080 4.080 23 C -0.161 4.161 24 C -0.083 4.083 25 C -0.154 4.154 26 N -0.300 5.300 27 H 0.267 0.733 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.414 0.586 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.614 -22.174 -2.197 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.098 5.098 11 C -0.099 4.099 12 C -0.316 4.316 13 C 0.003 3.997 14 N -0.275 5.275 15 C 0.312 3.688 16 O -0.394 6.394 17 C -0.176 4.176 18 C 0.000 4.000 19 O -0.231 6.231 20 C 0.088 3.912 21 C -0.226 4.226 22 C -0.098 4.098 23 C -0.180 4.180 24 C -0.101 4.101 25 C -0.173 4.173 26 N -0.131 5.131 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.249 0.751 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.988 -19.742 -2.483 26.163 hybrid contribution 0.169 -2.051 0.370 2.091 sum 17.157 -21.793 -2.114 27.817 Atomic orbital electron populations 1.70824 1.06781 1.30467 1.45921 1.25932 0.96313 1.02832 0.93100 0.83380 0.74687 0.74302 0.76977 1.21195 1.21237 1.20680 1.22126 0.95410 0.90400 1.56757 0.91790 1.19786 0.86307 0.82825 0.98051 1.48807 1.23298 1.19502 1.18147 1.22580 1.00457 0.90131 0.96703 1.21528 1.02218 1.06322 1.01558 1.19101 0.91554 0.94301 0.94727 1.42398 1.29910 1.24844 1.30353 1.20207 0.83942 0.79887 0.84808 1.90667 1.62870 1.60132 1.25733 1.21398 0.97177 0.97553 1.01451 1.22429 0.87541 0.94255 0.95815 1.85962 1.46943 1.36744 1.53473 1.18993 0.93447 0.86012 0.92765 1.21398 1.03747 0.99187 0.98287 1.20995 0.95409 0.94383 0.99038 1.21084 0.98187 1.01285 0.97421 1.20970 0.99006 0.94440 0.95706 1.20464 0.97048 0.97440 1.02332 1.77359 1.03474 1.16167 1.16064 0.92240 0.93571 0.94698 0.81434 0.82129 0.75085 0.87212 0.87179 0.90738 0.90754 0.85021 0.85736 0.85973 0.85421 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.65 55.43 0.76 -25.39 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.79 29.90 -169.99 -5.08 19.70 16 4 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.61 -16.99 9.24 -34.44 -0.32 -17.31 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.22 5.57 -5.19 -0.03 6.19 16 10 N -0.32 -7.28 3.67 -62.56 -0.23 -7.51 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 12 C -0.29 -5.48 9.61 -39.83 -0.38 -5.87 16 13 C 0.26 4.98 8.11 -154.39 -1.25 3.73 16 14 N -0.63 -8.98 5.45 -11.13 -0.06 -9.04 16 15 C 0.53 6.69 7.80 -10.99 -0.09 6.60 16 16 O -0.52 -8.18 13.11 5.55 0.07 -8.11 16 17 C -0.14 -1.13 6.07 -27.89 -0.17 -1.30 16 18 C 0.08 0.69 4.03 37.16 0.15 0.84 16 19 O -0.32 -3.16 10.14 -19.45 -0.20 -3.36 16 20 C 0.13 1.31 6.69 -39.22 -0.26 1.05 16 21 C -0.21 -1.91 9.04 -39.44 -0.36 -2.27 16 22 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 23 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 24 C -0.08 -0.60 10.04 -39.60 -0.40 -1.00 16 25 C -0.15 -1.32 9.99 -39.43 -0.39 -1.71 16 26 N -0.30 -6.82 12.42 31.44 0.39 -6.43 16 27 H 0.27 7.55 7.22 -40.82 -0.29 7.26 16 28 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 29 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 30 H 0.17 2.67 8.06 -52.48 -0.42 2.25 16 31 H 0.16 2.96 5.92 -52.49 -0.31 2.65 16 32 H 0.41 4.69 8.82 -40.82 -0.36 4.33 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.71 7.61 -51.93 -0.40 0.32 16 36 H 0.07 0.70 7.63 -51.93 -0.40 0.30 16 37 H 0.13 1.14 6.30 -52.48 -0.33 0.81 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -33.88 356.64 -8.64 -42.53 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.08 Total: 4.54 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -4.59 Total: -12.30 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.86 Total: -48.37 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.12 Total: -11.47 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.88 -8.64 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117718026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.160 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds