Wall clock time and date at job start Tue Mar 31 2020 10:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35241 * 107.86079 * 179.87198 * 11 10 9 13 13 C 1.40409 * 107.86602 * 0.39163 * 12 11 10 14 14 N 1.40159 * 125.97033 * 179.73843 * 13 12 11 15 15 C 1.34777 * 119.99983 * 0.02562 * 14 13 12 16 16 O 1.21290 * 120.00252 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99736 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47220 * 179.97438 * 17 15 14 19 19 O 1.42898 * 109.47505 * 180.02562 * 18 17 15 20 20 C 1.35907 * 117.00235 * 180.02562 * 19 18 17 21 21 C 1.38725 * 120.05386 * 359.72042 * 20 19 18 22 22 C 1.38143 * 119.94248 * 179.74374 * 21 20 19 23 23 C 1.38266 * 120.05484 * 0.51149 * 22 21 20 24 24 C 1.38263 * 120.11360 * 359.76666 * 23 22 21 25 25 C 1.38149 * 120.05170 * 359.97343 * 24 23 22 26 26 N 1.31219 * 108.05249 * 359.75456 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08003 * 126.06884 * 359.97438 * 11 10 9 31 31 H 1.08002 * 126.06490 * 180.12781 * 12 11 10 32 32 H 0.97003 * 119.99851 * 179.97438 * 14 13 12 33 33 H 1.09001 * 109.47309 * 299.99796 * 17 15 14 34 34 H 1.09006 * 109.47462 * 59.99731 * 17 15 14 35 35 H 1.09002 * 109.47236 * 299.99736 * 18 17 15 36 36 H 1.09003 * 109.47491 * 59.99825 * 18 17 15 37 37 H 1.08005 * 120.02755 * 0.02562 * 21 20 19 38 38 H 1.07999 * 119.97292 * 180.27535 * 22 21 20 39 39 H 1.08001 * 119.94626 * 179.74272 * 23 22 21 40 40 H 1.07996 * 119.97769 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.02719 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2631 -5.4436 0.5306 13 6 3.8671 -4.9129 -0.6205 14 7 4.9610 -5.4617 -1.3037 15 6 5.5273 -6.6026 -0.8631 16 8 5.0907 -7.1542 0.1250 17 6 6.7030 -7.1928 -1.5980 18 6 7.1515 -8.4760 -0.8957 19 8 8.2668 -9.0355 -1.5923 20 6 8.7903 -10.1869 -1.0951 21 6 8.2455 -10.7631 0.0432 22 6 8.7761 -11.9363 0.5436 23 6 9.8560 -12.5306 -0.0830 24 6 10.4044 -11.9551 -1.2143 25 6 9.8740 -10.7848 -1.7217 26 7 3.2287 -3.8133 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5913 -4.7503 1.7305 31 1 3.5589 -6.3457 1.0455 32 1 5.3099 -5.0207 -2.0941 33 1 6.4128 -7.4219 -2.6234 34 1 7.5245 -6.4764 -1.6044 35 1 7.4419 -8.2466 0.1295 36 1 6.3302 -9.1926 -0.8890 37 1 7.4044 -10.2973 0.5351 38 1 8.3496 -12.3877 1.4271 39 1 10.2720 -13.4455 0.3121 40 1 11.2475 -12.4214 -1.7022 41 1 10.3029 -10.3355 -2.6051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117718026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:06 Heat of formation + Delta-G solvation = 9.117291 kcal Electronic energy + Delta-G solvation = -23970.502330 eV Core-core repulsion = 20237.749100 eV Total energy + Delta-G solvation = -3732.753230 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33888 -41.19721 -40.57151 -38.36137 -36.47456 -35.55620 -33.53745 -32.51419 -31.83422 -31.05777 -30.48113 -28.28088 -26.19483 -24.94542 -23.56621 -23.09042 -22.46581 -21.78882 -20.98590 -19.40391 -19.24919 -18.32071 -17.85537 -17.53187 -16.99598 -16.84070 -16.59163 -16.38710 -15.85668 -15.63902 -15.44504 -15.07781 -14.84972 -14.43628 -14.35059 -14.26564 -14.00282 -13.90031 -13.72457 -13.23687 -12.95428 -12.78135 -12.61030 -12.46739 -12.05375 -11.98423 -11.78380 -11.72754 -11.69188 -11.03616 -11.00657 -10.70056 -9.94209 -9.87066 -9.24397 -9.17918 -8.79210 -6.57436 0.40254 0.49538 0.83021 1.17321 1.34810 1.50215 1.57711 1.77556 1.95133 2.13351 2.45996 2.53401 2.85815 3.00001 3.44818 3.74796 3.90676 3.91004 3.94264 4.04209 4.13035 4.27000 4.35235 4.46908 4.53097 4.54754 4.67309 4.68039 4.72912 4.77141 4.80368 4.81805 5.07604 5.10259 5.37049 5.50164 5.53505 5.61924 5.79522 5.85804 5.90998 6.15245 6.25005 6.39645 6.40139 6.87312 7.02161 7.18369 8.57101 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.036038 B = 0.001869 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.775938 B =14977.345816 C =15406.116565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.122 2.878 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.622 4.622 8 H 0.045 0.955 9 C 0.259 3.741 10 N -0.343 5.343 11 C 0.054 3.946 12 C -0.291 4.291 13 C 0.266 3.734 14 N -0.622 5.622 15 C 0.529 3.471 16 O -0.549 6.549 17 C -0.121 4.121 18 C 0.077 3.923 19 O -0.323 6.323 20 C 0.109 3.891 21 C -0.223 4.223 22 C -0.090 4.090 23 C -0.164 4.164 24 C -0.084 4.084 25 C -0.166 4.166 26 N -0.345 5.345 27 H 0.261 0.739 28 H 0.054 0.946 29 H 0.017 0.983 30 H 0.201 0.799 31 H 0.171 0.829 32 H 0.428 0.572 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.611 -23.286 -2.309 30.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.943 3.057 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.660 4.660 8 H 0.063 0.937 9 C 0.139 3.861 10 N -0.125 5.125 11 C -0.094 4.094 12 C -0.322 4.322 13 C 0.011 3.989 14 N -0.272 5.272 15 C 0.317 3.683 16 O -0.425 6.425 17 C -0.160 4.160 18 C 0.002 3.998 19 O -0.237 6.237 20 C 0.064 3.936 21 C -0.242 4.242 22 C -0.108 4.108 23 C -0.182 4.182 24 C -0.102 4.102 25 C -0.184 4.184 26 N -0.176 5.176 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.218 0.782 31 H 0.189 0.811 32 H 0.266 0.734 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.147 0.853 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.172 0.828 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.006 -20.894 -2.605 28.365 hybrid contribution -0.358 -1.918 0.419 1.996 sum 18.648 -22.812 -2.186 29.545 Atomic orbital electron populations 1.70919 1.07448 1.30211 1.47337 1.27280 0.96440 1.06089 0.92053 0.82840 0.73853 0.70957 0.78014 1.19386 1.20499 1.20054 1.22306 0.94683 0.92113 1.56880 0.93651 1.19434 0.86434 0.82814 0.97395 1.48576 1.24058 1.20157 1.19714 1.23201 1.00689 0.88833 0.96672 1.21754 1.02178 1.06554 1.01684 1.19483 0.91774 0.93072 0.94523 1.42579 1.28667 1.25313 1.30657 1.20995 0.84196 0.78768 0.84333 1.90648 1.63875 1.60725 1.27244 1.21354 0.95679 0.97295 1.01698 1.22359 0.87378 0.94469 0.95634 1.85924 1.47045 1.37075 1.53649 1.19269 0.94386 0.86380 0.93537 1.21516 1.04127 0.99988 0.98589 1.21287 0.95767 0.94088 0.99685 1.21443 0.97647 1.01905 0.97192 1.21340 0.99409 0.93855 0.95586 1.20739 0.96869 0.98031 1.02784 1.77272 1.04709 1.18246 1.17362 0.92938 0.92821 0.96504 0.78211 0.81146 0.73385 0.84616 0.84766 0.91482 0.91363 0.85334 0.84185 0.83632 0.82801 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.75 13.65 21.45 0.29 -53.46 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 49.53 29.90 68.60 2.05 51.58 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.62 -35.27 9.24 25.60 0.24 -35.04 16 8 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 9 C 0.26 13.25 5.57 85.64 0.48 13.73 16 10 N -0.34 -16.01 3.67 -351.83 -1.29 -17.30 16 11 C 0.05 2.10 11.43 83.52 0.96 3.06 16 12 C -0.29 -11.00 9.61 22.11 0.21 -10.79 16 13 C 0.27 10.24 8.11 133.32 1.08 11.32 16 14 N -0.62 -17.05 5.45 -307.52 -1.68 -18.72 16 15 C 0.53 12.66 7.80 87.66 0.68 13.34 16 16 O -0.55 -16.79 13.11 -3.06 -0.04 -16.83 16 17 C -0.12 -1.74 6.07 29.85 0.18 -1.56 16 18 C 0.08 1.35 4.03 71.98 0.29 1.64 16 19 O -0.32 -6.10 10.14 -92.50 -0.94 -7.04 16 20 C 0.11 2.08 6.69 22.50 0.15 2.23 16 21 C -0.22 -4.04 9.04 22.36 0.20 -3.84 16 22 C -0.09 -1.34 10.04 22.25 0.22 -1.11 16 23 C -0.16 -2.03 10.04 22.28 0.22 -1.81 16 24 C -0.08 -1.04 10.04 22.25 0.22 -0.82 16 25 C -0.17 -2.62 9.99 22.37 0.22 -2.40 16 26 N -0.35 -15.87 12.42 -54.45 -0.68 -16.54 16 27 H 0.26 15.03 7.22 -92.71 -0.67 14.36 16 28 H 0.05 2.63 7.94 -2.39 -0.02 2.62 16 29 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 30 H 0.20 6.09 8.06 -2.91 -0.02 6.07 16 31 H 0.17 6.12 5.92 -2.91 -0.02 6.10 16 32 H 0.43 9.04 8.82 -92.71 -0.82 8.23 16 33 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.26 7.61 -2.39 -0.02 1.24 16 36 H 0.07 1.26 7.63 -2.39 -0.02 1.24 16 37 H 0.13 2.27 6.30 -2.91 -0.02 2.25 16 38 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -73.85 356.64 3.89 -69.96 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.34 Total: 21.00 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.83 Total: -12.64 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.35 Total: -106.02 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.98 Total: -23.87 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.58 kcal Total: -73.85 3.89 -69.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117718026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.072 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds