Wall clock time and date at job start Tue Mar 31 2020 11:30:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38290 * 119.97149 * 2 1
4 4 C 1.38240 * 120.11120 * 180.02562 * 3 2 1
5 5 C 1.38163 * 120.05620 * 359.68665 * 4 3 2
6 6 C 1.38714 * 119.94541 * 0.57170 * 5 4 3
7 7 O 1.35894 * 120.05862 * 179.71896 * 6 5 4
8 8 C 1.42898 * 117.00490 * 359.72720 * 7 6 5
9 9 C 1.50696 * 109.47403 * 179.97438 * 8 7 6
10 10 O 1.21290 * 120.00012 * 359.97438 * 9 8 7
11 11 N 1.34777 * 119.99736 * 179.97438 * 9 8 7
12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 8
13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9
14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11
15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12
16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13
17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14
18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15
19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15
20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16
21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16
22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17
23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17
24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17
25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9
26 26 C 1.38118 * 119.97231 * 179.97438 * 2 1 3
27 27 H 1.08999 * 109.46867 * 270.01941 * 1 2 3
28 28 H 1.09001 * 109.47478 * 30.01663 * 1 2 3
29 29 H 1.08996 * 109.47463 * 150.01387 * 1 2 3
30 30 H 1.07997 * 119.94791 * 0.02562 * 3 2 1
31 31 H 1.07997 * 119.97318 * 179.97438 * 4 3 2
32 32 H 1.08000 * 120.03496 * 180.29118 * 5 4 3
33 33 H 1.09001 * 109.46875 * 59.99557 * 8 7 6
34 34 H 1.09006 * 109.46878 * 300.00245 * 8 7 6
35 35 H 0.97003 * 120.00166 * 0.02562 * 11 9 8
36 36 H 1.08002 * 126.06850 * 0.02562 * 13 12 11
37 37 H 1.08003 * 126.07024 * 180.26845 * 14 13 12
38 38 H 1.09004 * 109.47078 * 4.71821 * 16 15 14
39 39 H 1.08993 * 109.47364 * 244.71592 * 16 15 14
40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17
41 41 H 1.08002 * 120.02967 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1978 1.1980 0.0000
4 6 3.5802 1.2013 -0.0005
5 6 4.2751 0.0072 0.0055
6 6 3.5846 -1.1958 0.0000
7 8 4.2658 -2.3717 0.0002
8 6 5.6927 -2.2949 0.0000
9 6 6.2707 -3.6866 0.0008
10 8 5.5332 -4.6496 0.0019
11 7 7.6071 -3.8612 0.0002
12 6 8.1447 -5.1556 0.0015
13 6 7.4116 -6.3531 0.0029
14 6 8.2928 -7.3790 -0.0020
15 7 9.5370 -6.8561 0.0024
16 6 10.7898 -7.6155 0.0021
17 6 11.6412 -7.1797 -1.1626
18 1 11.2848 -6.4134 -1.8350
19 6 12.8749 -7.7593 -1.3697
20 7 13.3111 -8.6887 -0.5478
21 14 13.9305 -7.2186 -2.8130
22 1 15.2029 -7.9842 -2.8099
23 1 13.2023 -7.4738 -4.0818
24 1 14.2253 -5.7680 -2.6945
25 7 9.4211 -5.4602 0.0007
26 6 2.1970 -1.1965 0.0005
27 1 -0.3633 0.0003 1.0277
28 1 -0.3634 0.8898 -0.5141
29 1 -0.3634 -0.8901 -0.5136
30 1 1.6565 2.1325 0.0004
31 1 4.1175 2.1382 -0.0010
32 1 5.3551 0.0102 0.0098
33 1 6.0280 -1.7621 0.8898
34 1 6.0278 -1.7624 -0.8902
35 1 8.1969 -3.0911 -0.0003
36 1 6.3351 -6.4397 0.0028
37 1 8.0449 -8.4302 -0.0065
38 1 10.5698 -8.6794 -0.0868
39 1 11.3262 -7.4320 0.9330
40 1 12.7632 -8.9693 0.2018
41 1 1.6570 -2.1318 0.0005
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000117719099.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:06
Heat of formation + Delta-G solvation = 33.733414 kcal
Electronic energy + Delta-G solvation = -24097.974437 eV
Core-core repulsion = 20366.288643 eV
Total energy + Delta-G solvation = -3731.685794 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.97183 -40.48708 -39.30704 -37.75999 -34.95287 -33.73624 -32.87140 -31.38553
-30.69962 -29.46989 -28.58879 -27.26880 -26.14868 -23.28921 -22.89630 -22.26319
-21.25870 -20.42823 -19.74615 -18.26647 -17.35065 -17.22750 -16.70288 -16.53917
-16.31438 -15.96267 -15.20687 -14.88345 -14.58805 -14.27855 -14.10781 -13.86995
-13.79909 -13.59099 -13.26131 -12.95653 -12.59796 -12.47807 -12.45822 -12.23872
-11.91052 -11.86823 -11.33586 -11.23687 -11.19895 -10.84861 -10.55423 -10.18440
-10.13891 -9.71904 -9.14416 -9.04583 -8.61182 -8.53724 -8.28665 -7.60726
-6.61131 -4.35453 0.95735 1.10522 2.09910 2.11398 2.76232 3.12876
3.35874 3.37280 3.39827 3.55161 3.56316 3.73338 4.30295 4.38524
4.43290 4.52726 4.58789 4.68243 4.74209 4.88262 4.97455 5.12523
5.13502 5.23266 5.34672 5.39089 5.53673 5.63172 5.72660 5.95143
6.06730 6.07188 6.23095 6.33211 6.36846 6.45667 6.54046 6.70512
7.02092 7.21371 7.39004 7.64676 7.77449 8.04154 8.30274 8.46762
8.57829 9.32772 10.76479
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.031008 B = 0.001995 C = 0.001914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 902.785635 B =14028.208898 C =14627.508983
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.048 4.048
3 C -0.161 4.161
4 C -0.076 4.076
5 C -0.217 4.217
6 C 0.135 3.865
7 O -0.288 6.288
8 C 0.048 3.952
9 C 0.521 3.479
10 O -0.493 6.493
11 N -0.626 5.626
12 C 0.259 3.741
13 C -0.285 4.285
14 C 0.052 3.948
15 N -0.316 5.316
16 C 0.249 3.751
17 C -0.609 4.609
18 H 0.063 0.937
19 C 0.023 3.977
20 N -0.904 5.904
21 Si 1.077 2.923
22 H -0.280 1.280
23 H -0.286 1.286
24 H -0.285 1.285
25 N -0.299 5.299
26 C -0.150 4.150
27 H 0.073 0.927
28 H 0.068 0.932
29 H 0.069 0.931
30 H 0.123 0.877
31 H 0.125 0.875
32 H 0.129 0.871
33 H 0.098 0.902
34 H 0.098 0.902
35 H 0.413 0.587
36 H 0.162 0.838
37 H 0.169 0.831
38 H 0.047 0.953
39 H 0.035 0.965
40 H 0.267 0.733
41 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.318 18.841 2.060 28.525
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.048 4.048
3 C -0.179 4.179
4 C -0.094 4.094
5 C -0.236 4.236
6 C 0.090 3.910
7 O -0.200 6.200
8 C -0.031 4.031
9 C 0.305 3.695
10 O -0.364 6.364
11 N -0.276 5.276
12 C 0.006 3.994
13 C -0.316 4.316
14 C -0.097 4.097
15 N -0.097 5.097
16 C 0.131 3.869
17 C -0.647 4.647
18 H 0.082 0.918
19 C -0.182 4.182
20 N -0.539 5.539
21 Si 0.904 3.096
22 H -0.205 1.205
23 H -0.212 1.212
24 H -0.211 1.211
25 N -0.130 5.130
26 C -0.168 4.168
27 H 0.092 0.908
28 H 0.087 0.913
29 H 0.088 0.912
30 H 0.141 0.859
31 H 0.143 0.857
32 H 0.147 0.853
33 H 0.115 0.885
34 H 0.116 0.884
35 H 0.248 0.752
36 H 0.179 0.821
37 H 0.186 0.814
38 H 0.065 0.935
39 H 0.053 0.947
40 H 0.077 0.923
41 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -19.198 18.053 1.319 26.386
hybrid contribution -1.626 0.505 0.782 1.874
sum -20.824 18.558 2.101 27.972
Atomic orbital electron populations
1.20822 0.90647 1.03097 1.02664 1.19723 0.96140 0.92187 0.96755
1.20958 0.94197 0.97565 1.05158 1.20927 0.94181 0.97403 0.96859
1.21276 1.00365 0.92242 1.09723 1.19026 0.91847 0.84303 0.95859
1.86145 1.17583 1.27767 1.88482 1.22350 0.80909 0.95479 1.04373
1.19904 0.81545 0.90658 0.77430 1.90700 1.58616 1.41202 1.45896
1.42165 1.06346 1.06064 1.73019 1.19012 0.91672 0.85023 1.03729
1.21547 1.01239 0.89090 1.19731 1.22580 0.84923 0.99892 1.02334
1.48807 1.06801 1.02213 1.51907 1.19787 0.78051 0.89786 0.99323
1.22094 1.04590 1.25665 1.12357 0.91836 1.25931 0.96092 0.94010
1.02145 1.70854 1.39957 1.28165 1.14934 0.83415 0.75880 0.76031
0.74286 1.20500 1.21224 1.21140 1.77351 1.14416 0.93515 1.27716
1.20324 0.90775 0.98880 1.06834 0.90796 0.91259 0.91176 0.85934
0.85659 0.85321 0.88459 0.88413 0.75178 0.82096 0.81353 0.93529
0.94690 0.92265 0.84952
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.64 10.01 36.00 0.36 -0.28 16
2 C -0.05 -0.39 5.88 -104.65 -0.62 -1.00 16
3 C -0.16 -1.19 9.70 -39.56 -0.38 -1.58 16
4 C -0.08 -0.56 10.04 -39.61 -0.40 -0.96 16
5 C -0.22 -1.83 9.04 -39.43 -0.36 -2.18 16
6 C 0.14 1.42 6.69 -39.21 -0.26 1.15 16
7 O -0.29 -3.50 9.67 -39.32 -0.38 -3.88 16
8 C 0.05 0.46 5.22 36.00 0.19 0.64 16
9 C 0.52 7.26 7.87 -10.99 -0.09 7.18 16
10 O -0.49 -8.84 13.63 -14.36 -0.20 -9.04 16
11 N -0.63 -9.12 5.45 -11.13 -0.06 -9.18 16
12 C 0.26 5.09 8.11 -154.39 -1.25 3.84 16
13 C -0.28 -5.62 9.61 -39.83 -0.38 -6.00 16
14 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16
15 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16
16 C 0.25 6.23 5.57 -5.19 -0.03 6.21 16
17 C -0.61 -16.98 9.24 -34.44 -0.32 -17.30 16
18 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16
19 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16
20 N -0.90 -26.13 13.65 55.43 0.76 -25.38 16
21 Si 1.08 24.71 29.90 -169.99 -5.08 19.63 16
22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
23 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16
24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16
25 N -0.30 -6.80 12.42 31.44 0.39 -6.41 16
26 C -0.15 -1.47 9.64 -39.43 -0.38 -1.85 16
27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16
29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16
30 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16
31 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16
32 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16
33 H 0.10 0.65 7.65 -51.93 -0.40 0.25 16
34 H 0.10 0.67 7.67 -51.93 -0.40 0.27 16
35 H 0.41 4.55 8.82 -40.82 -0.36 4.19 16
36 H 0.16 3.10 5.92 -52.49 -0.31 2.79 16
37 H 0.17 2.72 8.06 -52.48 -0.42 2.30 16
38 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16
39 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16
40 H 0.27 7.55 7.22 -40.82 -0.29 7.25 16
41 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16
LS Contribution 357.10 15.07 5.38 5.38
Total: -1.00 -35.03 357.10 -8.71 -43.74
By element:
Atomic # 1 Polarization: 8.48 SS G_CDS: -5.08 Total: 3.40 kcal
Atomic # 6 Polarization: -6.54 SS G_CDS: -4.21 Total: -10.75 kcal
Atomic # 7 Polarization: -49.35 SS G_CDS: 0.86 Total: -48.49 kcal
Atomic # 8 Polarization: -12.34 SS G_CDS: -0.58 Total: -12.91 kcal
Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -35.03 -8.71 -43.74 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000117719099.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.477 kcal
(2) G-P(sol) polarization free energy of solvation -35.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.733 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds