Wall clock time and date at job start Tue Mar 31 2020 11:30:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38290 * 119.97149 * 2 1
4 4 C 1.38240 * 120.11120 * 180.02562 * 3 2 1
5 5 C 1.38163 * 120.05620 * 359.68665 * 4 3 2
6 6 C 1.38714 * 119.94541 * 0.57170 * 5 4 3
7 7 O 1.35894 * 120.05862 * 179.71896 * 6 5 4
8 8 C 1.42898 * 117.00490 * 359.72720 * 7 6 5
9 9 C 1.50696 * 109.47403 * 179.97438 * 8 7 6
10 10 O 1.21290 * 120.00012 * 359.97438 * 9 8 7
11 11 N 1.34777 * 119.99736 * 179.97438 * 9 8 7
12 12 C 1.40159 * 119.99983 * 179.97438 * 11 9 8
13 13 C 1.40409 * 125.97033 * 0.02562 * 12 11 9
14 14 C 1.35241 * 107.86602 * 179.73843 * 13 12 11
15 15 N 1.34966 * 107.86079 * 0.39163 * 14 13 12
16 16 C 1.46500 * 125.97782 * 179.87198 * 15 14 13
17 17 C 1.50706 * 109.47299 * 124.71059 * 16 15 14
18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15
19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15
20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16
21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16
22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17
23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17
24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17
25 25 N 1.31219 * 125.97718 * 179.97438 * 12 11 9
26 26 C 1.38118 * 119.97231 * 179.97438 * 2 1 3
27 27 H 1.08999 * 109.46867 * 270.01941 * 1 2 3
28 28 H 1.09001 * 109.47478 * 30.01663 * 1 2 3
29 29 H 1.08996 * 109.47463 * 150.01387 * 1 2 3
30 30 H 1.07997 * 119.94791 * 0.02562 * 3 2 1
31 31 H 1.07997 * 119.97318 * 179.97438 * 4 3 2
32 32 H 1.08000 * 120.03496 * 180.29118 * 5 4 3
33 33 H 1.09001 * 109.46875 * 59.99557 * 8 7 6
34 34 H 1.09006 * 109.46878 * 300.00245 * 8 7 6
35 35 H 0.97003 * 120.00166 * 0.02562 * 11 9 8
36 36 H 1.08002 * 126.06850 * 0.02562 * 13 12 11
37 37 H 1.08003 * 126.07024 * 180.26845 * 14 13 12
38 38 H 1.09004 * 109.47078 * 4.71821 * 16 15 14
39 39 H 1.08993 * 109.47364 * 244.71592 * 16 15 14
40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17
41 41 H 1.08002 * 120.02967 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1978 1.1980 0.0000
4 6 3.5802 1.2013 -0.0005
5 6 4.2751 0.0072 0.0055
6 6 3.5846 -1.1958 0.0000
7 8 4.2658 -2.3717 0.0002
8 6 5.6927 -2.2949 0.0000
9 6 6.2707 -3.6866 0.0008
10 8 5.5332 -4.6496 0.0019
11 7 7.6071 -3.8612 0.0002
12 6 8.1447 -5.1556 0.0015
13 6 7.4116 -6.3531 0.0029
14 6 8.2928 -7.3790 -0.0020
15 7 9.5370 -6.8561 0.0024
16 6 10.7898 -7.6155 0.0021
17 6 11.6412 -7.1797 -1.1626
18 1 11.2848 -6.4134 -1.8350
19 6 12.8749 -7.7593 -1.3697
20 7 13.3111 -8.6887 -0.5478
21 14 13.9305 -7.2186 -2.8130
22 1 15.2029 -7.9842 -2.8099
23 1 13.2023 -7.4738 -4.0818
24 1 14.2253 -5.7680 -2.6945
25 7 9.4211 -5.4602 0.0007
26 6 2.1970 -1.1965 0.0005
27 1 -0.3633 0.0003 1.0277
28 1 -0.3634 0.8898 -0.5141
29 1 -0.3634 -0.8901 -0.5136
30 1 1.6565 2.1325 0.0004
31 1 4.1175 2.1382 -0.0010
32 1 5.3551 0.0102 0.0098
33 1 6.0280 -1.7621 0.8898
34 1 6.0278 -1.7624 -0.8902
35 1 8.1969 -3.0911 -0.0003
36 1 6.3351 -6.4397 0.0028
37 1 8.0449 -8.4302 -0.0065
38 1 10.5698 -8.6794 -0.0868
39 1 11.3262 -7.4320 0.9330
40 1 12.7632 -8.9693 0.2018
41 1 1.6570 -2.1318 0.0005
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000117719099.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:06
Heat of formation + Delta-G solvation = 12.672301 kcal
Electronic energy + Delta-G solvation = -24098.887716 eV
Core-core repulsion = 20366.288643 eV
Total energy + Delta-G solvation = -3732.599073 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-42.38023 -41.40463 -40.41970 -38.50825 -36.47302 -35.59103 -33.40305 -32.93492
-31.59585 -31.08101 -29.55023 -28.06071 -27.67905 -25.15486 -23.50424 -23.46087
-22.40944 -21.72589 -21.07515 -19.25714 -19.02505 -18.55589 -17.80547 -17.55690
-17.18212 -16.78806 -16.63561 -16.21401 -15.70101 -15.54682 -15.29342 -15.10457
-14.98333 -14.49736 -14.20961 -14.17679 -13.96954 -13.78832 -13.60189 -13.24524
-13.08617 -12.92511 -12.61793 -12.43520 -12.10410 -11.95754 -11.95625 -11.84614
-11.69928 -11.03504 -10.99398 -10.70069 -9.89773 -9.73441 -9.27514 -9.17602
-8.78894 -6.56862 0.37146 0.47983 0.77854 0.97929 1.29115 1.51321
1.57494 1.78602 1.88493 2.07518 2.47631 2.57139 2.80269 3.00570
3.32460 3.81420 3.87795 3.94776 4.00151 4.03645 4.10267 4.21689
4.36577 4.44693 4.53717 4.55472 4.65121 4.76026 4.78169 4.83892
4.88491 4.99707 5.04299 5.24785 5.35167 5.50261 5.53406 5.66460
5.75547 5.82569 5.89058 6.10540 6.24057 6.37876 6.39660 6.82884
6.97136 7.18865 8.57716
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.031008 B = 0.001995 C = 0.001914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 902.785635 B =14028.208898 C =14627.508983
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.055 4.055
3 C -0.164 4.164
4 C -0.079 4.079
5 C -0.221 4.221
6 C 0.112 3.888
7 O -0.319 6.319
8 C 0.055 3.945
9 C 0.522 3.478
10 O -0.536 6.536
11 N -0.616 5.616
12 C 0.268 3.732
13 C -0.294 4.294
14 C 0.057 3.943
15 N -0.342 5.342
16 C 0.258 3.742
17 C -0.622 4.622
18 H 0.046 0.954
19 C -0.019 4.019
20 N -0.923 5.923
21 Si 1.120 2.880
22 H -0.276 1.276
23 H -0.272 1.272
24 H -0.274 1.274
25 N -0.339 5.339
26 C -0.174 4.174
27 H 0.081 0.919
28 H 0.084 0.916
29 H 0.068 0.932
30 H 0.145 0.855
31 H 0.152 0.848
32 H 0.152 0.848
33 H 0.133 0.867
34 H 0.131 0.869
35 H 0.430 0.570
36 H 0.167 0.833
37 H 0.202 0.798
38 H 0.054 0.946
39 H 0.018 0.982
40 H 0.261 0.739
41 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.969 21.365 1.468 30.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.055 4.055
3 C -0.182 4.182
4 C -0.097 4.097
5 C -0.239 4.239
6 C 0.068 3.932
7 O -0.233 6.233
8 C -0.023 4.023
9 C 0.308 3.692
10 O -0.410 6.410
11 N -0.268 5.268
12 C 0.013 3.987
13 C -0.325 4.325
14 C -0.091 4.091
15 N -0.123 5.123
16 C 0.139 3.861
17 C -0.660 4.660
18 H 0.065 0.935
19 C -0.219 4.219
20 N -0.559 5.559
21 Si 0.941 3.059
22 H -0.201 1.201
23 H -0.197 1.197
24 H -0.199 1.199
25 N -0.170 5.170
26 C -0.193 4.193
27 H 0.099 0.901
28 H 0.103 0.897
29 H 0.087 0.913
30 H 0.163 0.837
31 H 0.170 0.830
32 H 0.170 0.830
33 H 0.150 0.850
34 H 0.149 0.851
35 H 0.269 0.731
36 H 0.184 0.816
37 H 0.219 0.781
38 H 0.072 0.928
39 H 0.036 0.964
40 H 0.070 0.930
41 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -19.876 20.617 0.742 28.648
hybrid contribution -1.601 -0.195 1.013 1.905
sum -21.478 20.422 1.755 29.689
Atomic orbital electron populations
1.20873 0.89147 1.03813 1.03341 1.20030 0.97401 0.91907 0.96178
1.21324 0.94660 0.98130 1.04121 1.21320 0.94418 0.98178 0.95735
1.21563 1.01618 0.91658 1.09096 1.19238 0.92060 0.84492 0.97438
1.86079 1.18726 1.29262 1.89183 1.22470 0.80043 0.92234 1.07552
1.20810 0.80702 0.92209 0.75448 1.90675 1.59471 1.43153 1.47714
1.42270 1.07087 1.04801 1.72631 1.19368 0.90867 0.87164 1.01258
1.21736 1.01421 0.89344 1.19957 1.23177 0.83731 1.01651 1.00575
1.48591 1.06897 1.02625 1.54235 1.19453 0.78791 0.90316 0.97530
1.22282 1.05417 1.25327 1.12968 0.93541 1.27285 0.97340 0.93411
1.03844 1.70949 1.40201 1.29251 1.15475 0.82874 0.74696 0.76289
0.72050 1.20065 1.19697 1.19921 1.77268 1.16106 0.93594 1.30050
1.20500 0.91162 0.99390 1.08270 0.90057 0.89732 0.91293 0.83695
0.83027 0.83021 0.84982 0.85109 0.73080 0.81607 0.78139 0.92814
0.96382 0.92973 0.85922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.12 10.01 71.23 0.71 -0.41 16
2 C -0.06 -0.82 5.88 -19.88 -0.12 -0.94 16
3 C -0.16 -2.04 9.70 22.28 0.22 -1.82 16
4 C -0.08 -0.93 10.04 22.25 0.22 -0.71 16
5 C -0.22 -3.14 9.04 22.37 0.20 -2.94 16
6 C 0.11 2.24 6.69 22.51 0.15 2.40 16
7 O -0.32 -7.50 9.67 -73.32 -0.71 -8.21 16
8 C 0.05 0.91 5.22 71.23 0.37 1.29 16
9 C 0.52 13.92 7.87 87.66 0.69 14.61 16
10 O -0.54 -19.19 13.63 15.97 0.22 -18.97 16
11 N -0.62 -17.16 5.45 -307.52 -1.68 -18.84 16
12 C 0.27 10.47 8.11 133.32 1.08 11.55 16
13 C -0.29 -11.52 9.61 22.11 0.21 -11.31 16
14 C 0.06 2.25 11.44 83.52 0.96 3.20 16
15 N -0.34 -15.97 3.67 -351.83 -1.29 -17.26 16
16 C 0.26 13.22 5.57 85.64 0.48 13.70 16
17 C -0.62 -35.14 9.24 25.60 0.24 -34.90 16
18 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16
19 C -0.02 -1.06 5.46 84.65 0.46 -0.60 16
20 N -0.92 -53.69 13.65 21.45 0.29 -53.40 16
21 Si 1.12 49.24 29.90 68.60 2.05 51.30 16
22 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16
23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
25 N -0.34 -15.55 12.42 -54.45 -0.68 -16.22 16
26 C -0.17 -3.42 9.64 22.37 0.22 -3.20 16
27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
28 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16
29 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16
30 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16
31 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16
32 H 0.15 1.30 6.30 -2.91 -0.02 1.28 16
33 H 0.13 1.30 7.65 -2.39 -0.02 1.28 16
34 H 0.13 1.34 7.67 -2.38 -0.02 1.32 16
35 H 0.43 8.67 8.82 -92.71 -0.82 7.85 16
36 H 0.17 6.39 5.92 -2.91 -0.02 6.37 16
37 H 0.20 6.26 8.06 -2.91 -0.02 6.24 16
38 H 0.05 2.64 7.94 -2.39 -0.02 2.62 16
39 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16
40 H 0.26 15.01 7.22 -92.71 -0.67 14.34 16
41 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16
Total: -1.00 -77.55 357.10 4.65 -72.91
By element:
Atomic # 1 Polarization: 18.44 SS G_CDS: 0.35 Total: 18.79 kcal
Atomic # 6 Polarization: -16.18 SS G_CDS: 6.09 Total: -10.09 kcal
Atomic # 7 Polarization: -102.37 SS G_CDS: -3.35 Total: -105.72 kcal
Atomic # 8 Polarization: -26.69 SS G_CDS: -0.49 Total: -27.18 kcal
Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.30 kcal
Total: -77.55 4.65 -72.91 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000117719099.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.577 kcal
(2) G-P(sol) polarization free energy of solvation -77.554 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.672 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds