Wall clock time and date at job start Tue Mar 31 2020 11:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34241 * 125.02834 * 2 1 4 4 C 1.46505 * 107.00678 * 179.97438 * 3 2 1 5 5 C 1.39610 * 133.92284 * 179.97438 * 4 3 2 6 6 C 1.38277 * 119.58521 * 180.02562 * 5 4 3 7 7 N 1.39907 * 119.88727 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99703 * 213.46379 * 7 6 5 9 9 O 1.21387 * 120.00270 * 5.11371 * 8 7 6 10 10 C 1.49336 * 119.99697 * 185.11327 * 8 7 6 11 11 O 1.21359 * 120.00379 * 359.97438 * 10 8 7 12 12 N 1.34779 * 120.00123 * 179.97438 * 10 8 7 13 13 C 1.46493 * 120.00239 * 180.02562 * 12 10 8 14 14 H 1.09000 * 109.47394 * 34.99808 * 13 12 10 15 15 C 1.52998 * 109.47300 * 274.99640 * 13 12 10 16 16 C 1.50710 * 109.47200 * 154.99738 * 13 12 10 17 17 H 1.07995 * 119.99589 * 5.36525 * 16 13 12 18 18 C 1.37874 * 120.00122 * 185.36344 * 16 13 12 19 19 N 1.31513 * 119.99897 * 6.86653 * 18 16 13 20 20 Si 1.86797 * 120.00153 * 186.87049 * 18 16 13 21 21 H 1.48500 * 109.47363 * 94.98502 * 20 18 16 22 22 H 1.48495 * 109.47295 * 214.98960 * 20 18 16 23 23 H 1.48510 * 109.46898 * 334.98615 * 20 18 16 24 24 C 1.39457 * 120.22287 * 0.02562 * 6 5 4 25 25 C 1.37607 * 120.60199 * 0.23195 * 24 6 5 26 26 C 1.39151 * 120.02193 * 359.49594 * 25 24 6 27 27 N 1.36810 * 125.02952 * 180.02562 * 2 1 3 28 28 H 0.96999 * 125.06460 * 359.97438 * 27 2 1 29 29 H 1.08995 * 109.47269 * 90.00092 * 1 2 3 30 30 H 1.08997 * 109.47076 * 210.00111 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99541 * 1 2 3 32 32 H 1.08001 * 126.49297 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.20701 * 359.97438 * 5 4 3 34 34 H 0.97004 * 120.00061 * 33.46105 * 7 6 5 35 35 H 0.97005 * 119.99575 * 359.97438 * 12 10 8 36 36 H 1.09001 * 109.47226 * 294.65483 * 15 13 12 37 37 H 1.09002 * 109.46966 * 54.64893 * 15 13 12 38 38 H 1.08992 * 109.47403 * 174.65084 * 15 13 12 39 39 H 0.97001 * 119.99689 * 179.97438 * 19 18 16 40 40 H 1.08003 * 119.70047 * 179.97438 * 24 6 5 41 41 H 1.08006 * 119.98857 * 179.74502 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2776 1.0993 0.0000 4 6 3.6708 0.6460 0.0006 5 6 4.9028 1.3026 0.0005 6 6 6.0708 0.5625 0.0007 7 7 7.3090 1.2140 0.0011 8 6 8.3589 0.6661 -0.6423 9 8 8.2087 -0.3436 -1.2992 10 6 9.7071 1.3013 -0.5472 11 8 9.8572 2.3111 0.1091 12 7 10.7572 0.7532 -1.1902 13 6 12.0798 1.3760 -1.0964 14 1 12.2097 1.8053 -0.1030 15 6 12.1995 2.4801 -2.1487 16 6 13.1432 0.3354 -1.3369 17 1 12.8625 -0.6670 -1.6244 18 6 14.4743 0.6633 -1.1898 19 7 14.8125 1.8403 -0.7105 20 14 15.7973 -0.5643 -1.6714 21 1 16.2480 -0.2875 -3.0591 22 1 16.9494 -0.4403 -0.7428 23 1 15.2463 -1.9413 -1.5954 24 6 6.0189 -0.8311 0.0006 25 6 4.8092 -1.4869 -0.0046 26 6 3.6228 -0.7597 0.0008 27 7 2.2923 -1.1203 -0.0005 28 1 1.9621 -2.0323 -0.0006 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.9353 2.1236 0.0004 33 1 4.9433 2.3819 -0.0007 34 1 7.4117 2.0601 0.4644 35 1 10.6372 -0.0541 -1.7144 36 1 12.1647 2.0382 -3.1446 37 1 11.3739 3.1824 -2.0339 38 1 13.1450 3.0061 -2.0176 39 1 15.7490 2.0708 -0.6066 40 1 6.9364 -1.4008 0.0003 41 1 4.7805 -2.5666 -0.0088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123084141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:31 Heat of formation + Delta-G solvation = -15.550981 kcal Electronic energy + Delta-G solvation = -24663.618669 eV Core-core repulsion = 20929.795743 eV Total energy + Delta-G solvation = -3733.822926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49507 -40.40216 -38.43052 -37.00890 -35.15373 -34.15729 -32.39320 -32.12416 -31.10367 -29.31547 -28.83106 -26.88611 -25.31173 -24.62717 -22.40206 -22.01245 -20.61082 -20.42334 -19.56267 -18.60491 -17.79876 -17.29577 -16.36240 -15.86229 -15.65667 -15.10601 -15.08569 -14.96640 -14.41043 -14.19398 -13.96980 -13.51916 -13.39971 -13.27450 -13.21082 -13.14546 -12.72225 -12.45572 -12.29336 -11.94836 -11.82864 -11.23940 -11.11301 -11.07818 -11.01771 -10.79598 -10.40982 -10.29214 -9.99997 -9.77706 -9.17400 -9.03259 -8.59701 -8.13656 -7.97741 -7.66352 -6.18585 -4.25077 0.94379 1.30112 2.00016 2.48103 2.72377 2.89704 3.24477 3.31710 3.34675 3.63594 3.88000 4.12101 4.34804 4.40597 4.59500 4.84070 4.96307 5.08516 5.09405 5.15868 5.16634 5.27944 5.29977 5.41307 5.51794 5.76558 5.95645 6.06672 6.25908 6.37633 6.59061 6.64243 6.69647 6.78876 6.97450 7.00348 7.16571 7.23525 7.32002 7.43450 7.61522 7.72938 7.96668 7.98422 8.45842 8.63903 8.86845 9.40899 10.89974 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.038702 B = 0.002238 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.310395 B =12509.081258 C =13013.691602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.077 3.923 3 C -0.205 4.205 4 C -0.088 4.088 5 C -0.101 4.101 6 C 0.128 3.872 7 N -0.649 5.649 8 C 0.508 3.492 9 O -0.507 6.507 10 C 0.495 3.505 11 O -0.535 6.535 12 N -0.668 5.668 13 C 0.259 3.741 14 H 0.060 0.940 15 C -0.142 4.142 16 C -0.538 4.538 17 H 0.065 0.935 18 C 0.069 3.931 19 N -0.882 5.882 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.094 4.094 25 C -0.112 4.112 26 C 0.084 3.916 27 N -0.595 5.595 28 H 0.412 0.588 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.422 0.578 35 H 0.402 0.598 36 H 0.034 0.966 37 H 0.019 0.981 38 H 0.077 0.923 39 H 0.265 0.735 40 H 0.141 0.859 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.610 -3.891 1.897 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 C -0.230 4.230 4 C -0.093 4.093 5 C -0.122 4.122 6 C 0.034 3.966 7 N -0.296 5.296 8 C 0.291 3.709 9 O -0.381 6.381 10 C 0.273 3.727 11 O -0.414 6.414 12 N -0.317 5.317 13 C 0.159 3.841 14 H 0.078 0.922 15 C -0.201 4.201 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.135 4.135 19 N -0.519 5.519 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.115 4.115 25 C -0.133 4.133 26 C -0.023 4.023 27 N -0.199 5.199 28 H 0.249 0.751 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.163 0.837 33 H 0.146 0.854 34 H 0.260 0.740 35 H 0.236 0.764 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.158 0.842 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.373 -3.875 1.933 26.726 hybrid contribution 0.656 -1.001 -0.317 1.239 sum -25.716 -4.876 1.616 26.224 Atomic orbital electron populations 1.20465 0.87810 1.03641 1.03115 1.20296 0.93334 0.85949 1.03520 1.21403 0.90126 0.97743 1.13714 1.18849 0.93031 0.91812 1.05567 1.20178 0.89176 0.99412 1.03456 1.17426 0.84263 0.91652 1.03300 1.43202 1.07752 1.25931 1.52720 1.20911 0.86341 0.84752 0.78943 1.90731 1.84876 1.24170 1.38350 1.19687 0.85064 0.85546 0.82383 1.90731 1.84638 1.24546 1.41459 1.46480 1.09508 1.28722 1.46999 1.18989 0.75796 0.91976 0.97382 0.92188 1.22029 1.00971 0.98433 0.98641 1.21168 0.90577 0.96883 1.48966 0.91717 1.24885 0.98539 0.95742 0.94355 1.69962 1.17880 1.20902 1.43119 0.86415 0.80981 0.81210 0.78425 1.20486 1.21082 1.19715 1.20854 0.98005 0.92711 0.99907 1.19850 0.88997 0.99087 1.05364 1.18226 0.84399 0.94143 1.05514 1.41709 1.04028 1.08021 1.66138 0.75112 0.90502 0.91449 0.89696 0.83707 0.85360 0.74034 0.76354 0.94692 0.96142 0.90409 0.92475 0.84178 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.39 36.01 0.37 -0.02 16 2 C 0.08 0.62 7.08 -81.78 -0.58 0.04 16 3 C -0.20 -1.99 10.95 -37.66 -0.41 -2.41 16 4 C -0.09 -1.05 6.37 -105.14 -0.67 -1.72 16 5 C -0.10 -1.24 10.01 -39.06 -0.39 -1.63 16 6 C 0.13 1.77 6.27 -83.70 -0.52 1.25 16 7 N -0.65 -9.41 5.32 -10.28 -0.05 -9.47 16 8 C 0.51 8.81 7.62 -11.64 -0.09 8.72 16 9 O -0.51 -9.37 14.15 5.46 0.08 -9.29 16 10 C 0.49 9.99 7.85 -11.64 -0.09 9.90 16 11 O -0.54 -11.89 16.14 5.49 0.09 -11.80 16 12 N -0.67 -14.36 5.06 -55.40 -0.28 -14.64 16 13 C 0.26 6.52 2.43 -69.08 -0.17 6.35 16 14 H 0.06 1.71 7.54 -51.93 -0.39 1.32 16 15 C -0.14 -3.41 9.25 37.16 0.34 -3.07 16 16 C -0.54 -14.20 8.67 -34.44 -0.30 -14.50 16 17 H 0.06 1.65 7.73 -52.49 -0.41 1.25 16 18 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 19 N -0.88 -24.63 12.06 55.43 0.67 -23.97 16 20 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.09 -1.29 8.62 -39.36 -0.34 -1.63 16 25 C -0.11 -1.30 10.06 -39.47 -0.40 -1.70 16 26 C 0.08 0.95 7.27 -83.91 -0.61 0.34 16 27 N -0.59 -5.04 6.08 -6.92 -0.04 -5.08 16 28 H 0.41 2.27 8.96 -40.82 -0.37 1.90 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.42 5.45 8.29 -40.82 -0.34 5.12 16 35 H 0.40 8.04 7.99 -40.82 -0.33 7.72 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 2.00 6.92 -51.93 -0.36 1.64 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.14 2.05 6.39 -52.48 -0.34 1.72 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -31.62 354.82 -8.20 -39.82 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.04 Total: 11.81 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -3.95 Total: 1.68 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.29 Total: -53.15 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.17 Total: -21.09 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.62 -8.20 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123084141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.273 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds