Wall clock time and date at job start Tue Mar 31 2020 10:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47646 * 64.71264 * 3 2 1 5 5 N 1.46498 * 109.47161 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99874 * 274.99798 * 5 4 3 7 7 C 1.50703 * 109.46907 * 275.00275 * 6 5 4 8 8 H 1.08001 * 120.00049 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99988 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00266 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47090 * 59.99813 * 11 9 7 13 13 H 1.48499 * 109.47376 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46868 * 300.00174 * 11 9 7 15 15 S 1.65595 * 119.99850 * 95.00088 * 5 4 3 16 16 O 1.42105 * 106.40149 * 203.53728 * 15 5 4 17 17 O 1.42098 * 106.40317 * 336.45602 * 15 5 4 18 18 N 1.65606 * 107.22013 * 89.99911 * 15 5 4 19 19 C 1.44583 * 118.63846 * 269.73130 * 18 15 5 20 20 C 1.54301 * 109.90916 * 270.85252 * 19 18 15 21 21 C 1.47097 * 110.29700 * 288.76212 * 20 19 18 22 22 C 1.52570 * 114.32835 * 62.73176 * 21 20 19 23 23 C 1.50884 * 109.35166 * 274.98469 * 22 21 20 24 24 C 1.47599 * 118.64624 * 89.99684 * 18 15 5 25 25 H 1.09005 * 109.47405 * 304.70820 * 3 2 1 26 26 H 1.09003 * 109.46996 * 184.70845 * 3 2 1 27 27 H 1.08996 * 109.46879 * 59.99190 * 4 3 2 28 28 H 1.09003 * 109.46581 * 299.99836 * 4 3 2 29 29 H 1.09001 * 109.47378 * 34.99890 * 6 5 4 30 30 H 1.09002 * 109.46925 * 155.00631 * 6 5 4 31 31 H 0.97003 * 120.00349 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.44937 * 30.76674 * 19 18 15 33 33 H 1.08999 * 109.44431 * 150.68321 * 19 18 15 34 34 H 1.08997 * 109.40446 * 168.46861 * 20 19 18 35 35 H 1.09005 * 109.28698 * 48.97575 * 20 19 18 36 36 H 1.09002 * 108.51121 * 301.47843 * 21 20 19 37 37 H 1.08999 * 108.39215 * 183.89734 * 21 20 19 38 38 H 1.08995 * 109.49178 * 155.01985 * 22 21 20 39 39 H 1.09001 * 109.48695 * 34.94424 * 22 21 20 40 40 H 1.08996 * 109.36919 * 331.68965 * 23 22 21 41 41 H 1.09003 * 109.36375 * 212.07737 * 23 22 21 42 42 H 1.09004 * 108.94714 * 258.55751 * 24 18 15 43 43 H 1.09003 * 108.94549 * 17.27159 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.6153 -1.3043 5 7 4.5834 -0.6140 -1.3044 6 6 5.3148 0.5766 -1.7446 7 6 5.4585 0.5518 -3.2446 8 1 5.0466 -0.2690 -3.8130 9 6 6.1167 1.5764 -3.8911 10 7 6.6196 2.5750 -3.1988 11 14 6.2955 1.5453 -5.7503 12 1 4.9492 1.5321 -6.3769 13 1 7.0378 2.7516 -6.1964 14 1 7.0420 0.3272 -6.1554 15 16 5.4125 -1.9584 -0.8071 16 8 6.6952 -1.5083 -0.3928 17 8 4.5316 -2.6822 0.0410 18 7 5.6583 -2.9051 -2.1434 19 6 4.6656 -3.9012 -2.4791 20 6 4.9927 -5.2300 -1.7662 21 6 6.1789 -5.8550 -2.3711 22 6 7.4571 -5.0316 -2.2438 23 6 7.5230 -4.0331 -3.3730 24 6 6.8846 -2.7011 -2.9392 25 1 2.9717 -0.5843 0.8448 26 1 2.9709 1.0250 0.0844 27 1 2.7547 -0.0303 -2.1490 28 1 2.7555 -1.6397 -1.3886 29 1 4.7667 1.4705 -1.4469 30 1 6.3031 0.5863 -1.2850 31 1 7.0824 3.2961 -3.6536 32 1 3.6824 -3.5558 -2.1597 33 1 4.6613 -4.0603 -3.5574 34 1 4.1432 -5.9072 -1.8550 35 1 5.1862 -5.0346 -0.7114 36 1 5.9797 -6.0234 -3.4294 37 1 6.3405 -6.8210 -1.8925 38 1 8.3221 -5.6930 -2.2921 39 1 7.4556 -4.5031 -1.2905 40 1 6.9863 -4.4272 -4.2359 41 1 8.5649 -3.8630 -3.6446 42 1 6.6371 -2.1211 -3.8283 43 1 7.6053 -2.1426 -2.3420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123158427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:15 Heat of formation + Delta-G solvation = -60.485523 kcal Electronic energy + Delta-G solvation = -26228.830289 eV Core-core repulsion = 22628.502806 eV Total energy + Delta-G solvation = -3600.327483 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.57100 -37.17749 -36.75645 -35.67762 -35.28468 -33.43653 -32.83102 -32.38179 -30.67897 -26.99905 -26.00429 -25.18419 -23.82316 -22.16152 -20.99519 -20.22417 -18.34751 -17.56092 -17.19985 -16.81114 -16.43653 -16.15228 -15.30355 -15.06050 -14.67520 -14.47616 -14.20873 -13.85930 -13.56434 -13.39276 -13.23964 -12.75150 -12.60961 -12.49600 -12.30212 -12.24267 -12.00989 -11.84600 -11.71629 -11.67277 -11.41093 -11.19427 -11.03511 -10.98856 -10.66970 -10.62498 -10.59768 -10.50827 -10.44104 -10.27192 -10.09639 -9.88337 -8.65414 -8.54529 -8.24264 -6.17677 -4.24323 1.16511 2.89923 2.96337 3.21507 3.27789 3.28668 3.37106 3.92005 4.29116 4.32318 4.72752 4.80540 4.93090 4.97145 5.10927 5.17282 5.24364 5.27894 5.33588 5.36966 5.52246 5.63845 5.72207 5.78051 5.87221 5.90148 5.92529 6.14402 6.16070 6.18487 6.23590 6.29461 6.36695 6.44999 6.46832 6.56531 6.98720 7.23805 7.33974 7.50092 7.72188 7.78668 8.07087 8.80289 9.42230 10.90316 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.007622 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.263236 B = 3672.928223 C = 5819.689677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.223 3.777 3 C -0.053 4.053 4 C 0.140 3.860 5 N -0.992 5.992 6 C 0.243 3.757 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 S 2.780 3.220 16 O -0.975 6.975 17 O -0.995 6.995 18 N -0.994 5.994 19 C 0.131 3.869 20 C -0.141 4.141 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.126 4.126 24 C 0.118 3.882 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 -12.289 0.732 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.095 4.095 3 C -0.095 4.095 4 C 0.011 3.989 5 N -0.831 5.831 6 C 0.121 3.879 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.201 1.201 15 S 2.789 3.211 16 O -0.959 6.959 17 O -0.979 6.979 18 N -0.832 5.832 19 C 0.004 3.996 20 C -0.181 4.181 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.165 4.165 24 C -0.007 4.007 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.641 -12.288 1.567 12.496 hybrid contribution 0.453 0.236 -1.558 1.640 sum -1.188 -12.052 0.009 12.110 Atomic orbital electron populations 1.81174 1.13057 1.09642 1.09039 1.29109 0.95100 0.92518 0.92799 1.19917 0.81362 1.05947 1.02309 1.20867 0.81015 1.01116 0.95855 1.57845 1.12853 1.30732 1.81695 1.19274 0.92250 0.81349 0.95024 1.21484 1.36856 1.07636 0.92067 0.91841 1.24926 0.95165 0.95288 0.98314 1.69908 1.36575 1.10310 1.35829 0.86665 0.78270 0.77615 0.85490 1.20280 1.21252 1.20058 1.02002 0.73208 0.72488 0.73379 1.93571 1.40567 1.81336 1.80453 1.93545 1.67346 1.72612 1.64363 1.57469 1.28955 1.48792 1.47985 1.20986 0.90265 0.87851 1.00509 1.21234 0.98255 0.97404 1.01173 1.20439 0.95083 0.98650 1.00991 1.21062 0.97071 0.97623 0.99611 1.21721 1.00933 0.95645 0.98232 1.21719 0.85131 0.96762 0.97079 0.87138 0.86441 0.88978 0.90902 0.94170 0.92851 0.92473 0.91036 0.90620 0.91150 0.91256 0.92392 0.92921 0.92257 0.91826 0.91826 0.91005 0.90738 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.40 18.54 42.15 0.78 -6.62 16 2 C 0.22 3.16 15.43 -20.76 -0.32 2.84 16 3 C -0.05 -0.69 6.02 -29.52 -0.18 -0.86 16 4 C 0.14 2.06 5.30 -4.04 -0.02 2.03 16 5 N -0.99 -17.62 2.82 -115.66 -0.33 -17.95 16 6 C 0.24 5.32 5.43 -5.19 -0.03 5.30 16 7 C -0.54 -12.83 9.38 -34.44 -0.32 -13.15 16 8 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -23.83 13.29 55.43 0.74 -23.10 16 11 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 15 S 2.78 49.42 5.94 -107.50 -0.64 48.78 16 16 O -0.98 -20.59 15.06 -57.17 -0.86 -21.45 16 17 O -0.99 -17.62 15.34 -57.17 -0.88 -18.50 16 18 N -0.99 -15.18 2.60 -113.64 -0.30 -15.47 16 19 C 0.13 1.65 5.20 -4.38 -0.02 1.63 16 20 C -0.14 -1.64 5.67 -28.88 -0.16 -1.80 16 21 C -0.11 -1.21 5.15 -29.78 -0.15 -1.36 16 22 C -0.12 -1.35 5.51 -28.01 -0.15 -1.51 16 23 C -0.13 -1.52 5.71 -27.30 -0.16 -1.68 16 24 C 0.12 1.80 6.24 -2.95 -0.02 1.78 16 25 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 28 H 0.07 0.95 7.10 -51.93 -0.37 0.58 16 29 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 30 H 0.05 1.31 6.91 -51.93 -0.36 0.95 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.07 0.87 7.15 -51.93 -0.37 0.49 16 33 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.93 7.48 -51.93 -0.39 0.54 16 36 H 0.06 0.56 7.36 -51.93 -0.38 0.18 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 40 H 0.06 0.70 7.32 -51.93 -0.38 0.32 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.60 6.66 -51.93 -0.35 1.26 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -29.42 359.82 -9.47 -38.89 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.75 Total: 0.68 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.64 Total: -5.21 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: 0.90 Total: -63.13 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.74 Total: -39.95 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.64 Total: 48.78 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.42 -9.47 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123158427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.600 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds