Wall clock time and date at job start Tue Mar 31 2020 10:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47276 * 170.85225 * 3 2 1 5 5 C 1.37097 * 120.00005 * 264.21053 * 4 3 2 6 6 H 1.07998 * 119.99971 * 198.11791 * 5 4 3 7 7 C 1.38950 * 120.00461 * 18.11343 * 5 4 3 8 8 N 1.31419 * 119.99512 * 18.73191 * 7 5 4 9 9 Si 1.86799 * 120.00387 * 198.73471 * 7 5 4 10 10 H 1.48495 * 109.46974 * 85.58759 * 9 7 5 11 11 H 1.48501 * 109.46948 * 205.58806 * 9 7 5 12 12 H 1.48498 * 109.46957 * 325.58578 * 9 7 5 13 13 C 1.34771 * 120.00156 * 84.20443 * 4 3 2 14 14 O 1.21291 * 120.00743 * 180.02562 * 13 4 3 15 15 C 1.50705 * 119.99669 * 0.02562 * 13 4 3 16 16 C 1.53002 * 109.46765 * 179.97438 * 15 13 4 17 17 C 1.53010 * 109.46888 * 179.97438 * 16 15 13 18 18 N 1.46494 * 109.47034 * 180.02562 * 17 16 15 19 19 C 1.34781 * 120.00061 * 180.02562 * 18 17 16 20 20 O 1.21552 * 119.99595 * 359.97438 * 19 18 17 21 21 C 1.47846 * 120.00098 * 179.97438 * 19 18 17 22 22 C 1.39572 * 120.14257 * 179.97438 * 21 19 18 23 23 C 1.37960 * 119.85111 * 179.97438 * 22 21 19 24 24 C 1.38355 * 120.14578 * 359.97438 * 23 22 21 25 25 C 1.38358 * 120.29152 * 0.04432 * 24 23 22 26 26 C 1.37950 * 120.14703 * 359.95771 * 25 24 23 27 27 H 1.09005 * 109.46939 * 50.85276 * 3 2 1 28 28 H 1.08998 * 109.47307 * 290.85538 * 3 2 1 29 29 H 0.96998 * 119.99748 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47381 * 60.00259 * 15 13 4 31 31 H 1.09006 * 109.47039 * 299.99535 * 15 13 4 32 32 H 1.09000 * 109.47323 * 60.00638 * 16 15 13 33 33 H 1.08993 * 109.47295 * 299.99557 * 16 15 13 34 34 H 1.09003 * 109.46636 * 59.99812 * 17 16 15 35 35 H 1.09000 * 109.47042 * 300.00312 * 17 16 15 36 36 H 0.97007 * 120.00067 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.07712 * 359.69811 * 22 21 19 38 38 H 1.08003 * 119.92194 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.85466 * 180.02562 * 24 23 22 40 40 H 1.08007 * 119.92687 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.07681 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3645 -0.2196 5 6 3.4370 1.7755 -1.4822 6 1 4.0583 2.6486 -1.6164 7 6 2.9837 1.0687 -2.5893 8 7 1.9579 0.2552 -2.4745 9 14 3.8323 1.2746 -4.2406 10 1 4.9923 0.3509 -4.3195 11 1 2.8748 0.9611 -5.3316 12 1 4.3041 2.6753 -4.3834 13 6 3.2089 2.2152 0.8196 14 8 3.6123 3.3445 0.6378 15 6 2.8342 1.7632 2.2076 16 6 3.0549 2.9112 3.1946 17 6 2.6739 2.4526 4.6038 18 7 2.8846 3.5519 5.5488 19 6 2.6144 3.3767 6.8575 20 8 2.1954 2.3066 7.2536 21 6 2.8276 4.4860 7.8114 22 6 2.5482 4.3080 9.1672 23 6 2.7499 5.3471 10.0521 24 6 3.2285 6.5633 9.5982 25 6 3.5070 6.7464 8.2554 26 6 3.3098 5.7157 7.3600 27 1 2.9716 -0.6480 -0.7970 28 1 2.9715 -0.3650 0.9603 29 1 1.6417 -0.2385 -3.2472 30 1 3.4553 0.9144 2.4934 31 1 1.7852 1.4673 2.2225 32 1 2.4340 3.7604 2.9091 33 1 4.1039 3.2067 3.1796 34 1 3.2944 1.6032 4.8895 35 1 1.6247 2.1573 4.6185 36 1 3.2194 4.4058 5.2327 37 1 2.1708 3.3604 9.5222 38 1 2.5337 5.2107 11.1014 39 1 3.3850 7.3734 10.2951 40 1 3.8800 7.6984 7.9074 41 1 3.5272 5.8600 6.3120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126665356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:19 Heat of formation + Delta-G solvation = -35.208153 kcal Electronic energy + Delta-G solvation = -24409.316017 eV Core-core repulsion = 20674.640692 eV Total energy + Delta-G solvation = -3734.675325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22586 -40.62502 -39.23176 -37.66648 -36.72283 -36.10867 -34.05500 -33.51291 -32.00545 -31.82231 -29.25679 -28.34558 -26.32864 -24.62755 -23.49530 -22.78913 -21.57119 -20.56602 -19.71807 -19.07187 -18.20206 -17.90026 -17.31221 -16.90636 -16.84493 -16.40716 -15.95018 -15.93156 -15.70165 -15.44635 -14.91364 -14.71766 -14.66833 -14.44730 -14.13094 -13.88628 -13.61793 -13.45792 -13.23590 -13.10258 -13.01403 -12.83126 -12.62077 -12.41657 -12.29608 -12.14173 -12.08458 -12.00056 -11.77788 -11.11161 -11.07975 -10.39884 -10.26379 -9.94289 -9.90407 -9.85828 -8.38016 -5.95787 -0.13379 0.42514 1.41359 1.48683 1.58073 1.83708 1.84314 2.05394 2.13017 2.28037 2.37115 2.91557 3.02861 3.15078 3.62755 3.66333 3.82421 3.93330 4.03369 4.05744 4.11548 4.26143 4.35866 4.48058 4.51378 4.55078 4.64326 4.72714 4.81623 4.88221 4.96487 5.07057 5.18239 5.24266 5.33356 5.41347 5.46664 5.49601 5.52096 5.96152 6.06067 6.41675 6.46664 7.02741 7.12390 7.14422 7.38704 7.94927 8.65066 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.002225 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.971076 B =12579.179176 C =13358.750842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.259 3.741 3 C 0.221 3.779 4 N -0.459 5.459 5 C -0.336 4.336 6 H 0.083 0.917 7 C 0.001 3.999 8 N -0.897 5.897 9 Si 0.988 3.012 10 H -0.260 1.260 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.450 3.550 14 O -0.616 6.616 15 C -0.125 4.125 16 C -0.098 4.098 17 C 0.125 3.875 18 N -0.714 5.714 19 C 0.552 3.448 20 O -0.582 6.582 21 C -0.158 4.158 22 C -0.080 4.080 23 C -0.131 4.131 24 C -0.091 4.091 25 C -0.130 4.130 26 C -0.090 4.090 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.273 0.727 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.413 0.587 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.479 7.361 20.864 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.058 4.058 3 C 0.095 3.905 4 N -0.179 5.179 5 C -0.464 4.464 6 H 0.101 0.899 7 C -0.200 4.200 8 N -0.536 5.536 9 Si 0.812 3.188 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.241 3.759 14 O -0.501 6.501 15 C -0.166 4.166 16 C -0.137 4.137 17 C 0.002 3.998 18 N -0.366 5.366 19 C 0.341 3.659 20 O -0.464 6.464 21 C -0.161 4.161 22 C -0.099 4.099 23 C -0.149 4.149 24 C -0.109 4.109 25 C -0.147 4.147 26 C -0.108 4.108 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.250 0.750 37 H 0.141 0.859 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.612 7.016 20.864 22.490 hybrid contribution 0.395 0.257 -1.615 1.683 sum 5.007 7.273 19.249 21.177 Atomic orbital electron populations 1.80910 1.14888 1.09561 1.13964 1.29832 0.95877 0.91427 0.88667 1.19107 0.79946 0.86207 1.05275 1.43835 1.56799 1.10234 1.07021 1.19623 1.30331 1.14201 0.82228 0.89912 1.25901 0.95196 0.96554 1.02361 1.69914 1.21767 1.29123 1.32801 0.85014 0.78165 0.78634 0.76950 1.18443 1.21372 1.20340 1.21063 0.82072 0.84884 0.87868 1.90507 1.51905 1.21333 1.86399 1.21511 1.03592 1.00935 0.90547 1.21314 1.03108 0.97772 0.91469 1.21345 1.01506 0.89662 0.87330 1.45878 1.66638 1.17295 1.06801 1.18719 0.76791 0.87658 0.82731 1.90740 1.47740 1.28858 1.79064 1.19957 1.07014 0.94643 0.94467 1.21394 0.96570 0.99967 0.91989 1.21462 0.99777 0.92882 1.00765 1.21816 0.95111 0.97629 0.96372 1.21519 1.00012 0.99744 0.93450 1.21597 0.96318 0.91697 1.01221 0.85796 0.84206 0.91686 0.85799 0.89701 0.92084 0.90261 0.90432 0.92030 0.74963 0.85913 0.83136 0.82557 0.82682 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.92 18.54 20.01 0.37 -23.55 16 2 C 0.26 10.99 12.95 89.44 1.16 12.15 16 3 C 0.22 8.11 4.91 84.57 0.42 8.52 16 4 N -0.46 -20.41 2.60 -645.43 -1.68 -22.09 16 5 C -0.34 -17.05 9.33 84.04 0.78 -16.26 16 6 H 0.08 4.53 7.38 -2.91 -0.02 4.51 16 7 C 0.00 0.07 4.94 84.93 0.42 0.49 16 8 N -0.90 -44.29 9.33 21.66 0.20 -44.09 16 9 Si 0.99 39.70 29.59 68.60 2.03 41.73 16 10 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 11 H -0.29 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.45 18.98 7.56 87.66 0.66 19.65 16 14 O -0.62 -30.73 15.64 -3.06 -0.05 -30.78 16 15 C -0.13 -3.68 4.30 29.85 0.13 -3.55 16 16 C -0.10 -2.57 4.62 30.60 0.14 -2.43 16 17 C 0.13 2.94 5.67 86.38 0.49 3.43 16 18 N -0.71 -15.71 5.51 -465.96 -2.57 -18.27 16 19 C 0.55 14.36 7.77 86.79 0.67 15.03 16 20 O -0.58 -19.57 16.35 -3.88 -0.06 -19.63 16 21 C -0.16 -3.29 5.87 -20.09 -0.12 -3.40 16 22 C -0.08 -1.55 9.60 22.53 0.22 -1.34 16 23 C -0.13 -1.72 10.03 22.23 0.22 -1.50 16 24 C -0.09 -0.94 10.04 22.33 0.22 -0.71 16 25 C -0.13 -1.45 10.03 22.23 0.22 -1.22 16 26 C -0.09 -1.35 9.54 22.52 0.21 -1.13 16 27 H 0.12 4.75 6.40 -2.38 -0.02 4.73 16 28 H 0.14 3.50 6.68 -2.39 -0.02 3.48 16 29 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 30 H 0.12 2.71 7.42 -2.39 -0.02 2.69 16 31 H 0.08 2.51 7.51 -2.38 -0.02 2.49 16 32 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.41 6.99 6.51 -92.70 -0.60 6.39 16 37 H 0.12 2.58 7.65 -2.91 -0.02 2.56 16 38 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 40 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.14 1.58 6.41 -2.91 -0.02 1.56 16 Total: -1.00 -73.75 356.97 4.58 -69.17 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.47 Total: 19.78 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 5.86 Total: 27.73 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -3.67 Total: -108.01 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.11 Total: -50.41 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -73.75 4.58 -69.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126665356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.963 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds