Wall clock time and date at job start Tue Mar 31 2020 11:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34548 * 126.07963 * 2 1 4 4 O 1.34775 * 107.27332 * 179.77204 * 3 2 1 5 5 C 1.34425 * 107.69168 * 0.42029 * 4 3 2 6 6 C 1.47834 * 125.72423 * 179.83647 * 5 4 3 7 7 C 1.39618 * 120.10645 * 179.67608 * 6 5 4 8 8 C 1.37990 * 120.00342 * 180.02562 * 7 6 5 9 9 C 1.38247 * 120.22491 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.89080 * 180.02562 * 9 8 7 11 11 C 1.38995 * 120.21763 * 359.73850 * 9 8 7 12 12 N 1.39691 * 120.00472 * 180.25825 * 11 9 8 13 13 C 1.46502 * 120.00068 * 180.28013 * 12 11 9 14 14 C 1.50699 * 109.47065 * 180.02562 * 13 12 11 15 15 O 1.21292 * 120.00510 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00073 * 179.97438 * 14 13 12 17 17 C 1.37098 * 120.00131 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00227 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99855 * 179.97438 * 17 16 14 20 20 N 1.31417 * 119.99757 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46957 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47169 * 120.00295 * 21 19 17 24 24 H 1.48503 * 109.46818 * 240.00031 * 21 19 17 25 25 C 1.38671 * 119.98974 * 0.54226 * 11 9 8 26 26 N 1.31222 * 108.54703 * 359.57388 * 5 4 3 27 27 H 1.08997 * 109.47730 * 269.97736 * 1 2 3 28 28 H 1.09000 * 109.47743 * 29.98616 * 1 2 3 29 29 H 1.09009 * 109.46692 * 149.97979 * 1 2 3 30 30 H 1.08010 * 126.36006 * 0.03826 * 3 2 1 31 31 H 1.08003 * 120.00167 * 0.02562 * 7 6 5 32 32 H 1.07997 * 119.88630 * 179.97438 * 8 7 6 33 33 H 1.08996 * 109.47232 * 89.99431 * 10 9 8 34 34 H 1.09006 * 109.46935 * 209.99583 * 10 9 8 35 35 H 1.09000 * 109.46843 * 329.99263 * 10 9 8 36 36 H 0.97000 * 120.00265 * 0.27760 * 12 11 9 37 37 H 1.08997 * 109.46860 * 300.00010 * 13 12 11 38 38 H 1.08998 * 109.47322 * 60.00266 * 13 12 11 39 39 H 0.97003 * 120.00009 * 359.97438 * 16 14 13 40 40 H 0.96997 * 119.99179 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.11341 * 179.74814 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2993 1.0874 0.0000 4 8 3.5751 0.6529 0.0051 5 6 3.5490 -0.6910 -0.0012 6 6 4.7322 -1.5774 -0.0021 7 6 4.5685 -2.9639 -0.0022 8 6 5.6744 -3.7892 -0.0025 9 6 6.9466 -3.2482 -0.0033 10 6 8.1490 -4.1565 -0.0042 11 6 7.1202 -1.8691 -0.0092 12 7 8.4077 -1.3272 -0.0154 13 6 8.5907 0.1263 -0.0155 14 6 10.0631 0.4473 -0.0234 15 8 10.8794 -0.4498 -0.0280 16 7 10.4729 1.7312 -0.0253 17 6 11.8124 2.0232 -0.0331 18 1 12.5392 1.2244 -0.0372 19 6 12.2349 3.3470 -0.0356 20 7 11.3505 4.3190 -0.0301 21 14 14.0600 3.7449 -0.0469 22 1 14.8418 2.4824 -0.0511 23 1 14.3870 4.5344 -1.2613 24 1 14.4019 4.5342 1.1636 25 6 6.0152 -1.0313 -0.0030 26 7 2.2971 -1.0842 -0.0008 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5142 30 1 1.9734 2.1172 0.0006 31 1 3.5763 -3.3906 -0.0020 32 1 5.5456 -4.8615 -0.0021 33 1 8.4382 -4.3755 -1.0320 34 1 8.9758 -3.6654 0.5091 35 1 7.9028 -5.0857 0.5098 36 1 9.1806 -1.9133 -0.0196 37 1 8.1217 0.5515 -0.9028 38 1 8.1308 0.5505 0.8771 39 1 9.8201 2.4487 -0.0220 40 1 11.6455 5.2430 -0.0323 41 1 6.1479 0.0405 -0.0035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127970686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:25 Heat of formation + Delta-G solvation = 5.934342 kcal Electronic energy + Delta-G solvation = -24668.197986 eV Core-core repulsion = 20935.306734 eV Total energy + Delta-G solvation = -3732.891253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.35996 -39.70860 -38.32679 -35.42154 -35.18085 -34.04566 -33.34404 -31.42683 -31.25096 -29.80389 -28.11805 -26.98595 -26.31058 -24.53259 -22.87937 -22.16371 -20.99737 -20.62383 -19.39700 -18.14625 -17.89685 -16.76009 -16.74871 -16.03350 -15.61981 -15.20853 -14.89222 -14.82707 -14.45387 -14.24665 -13.94223 -13.79587 -13.54401 -13.49880 -13.41459 -13.08983 -12.55471 -12.44707 -12.32732 -12.16335 -12.04337 -11.66648 -11.32603 -11.20040 -11.10688 -11.09424 -10.64573 -10.43802 -10.35140 -10.11376 -9.67765 -9.34509 -8.66721 -8.27640 -8.14084 -7.21053 -6.55394 -3.97197 0.64436 1.60488 1.79359 2.60435 2.67029 3.07523 3.19949 3.26366 3.52568 3.69364 3.82582 3.90050 4.10195 4.60632 4.70183 4.81968 4.86882 4.99003 5.12750 5.21438 5.27433 5.31147 5.37135 5.46980 5.52526 5.66273 5.68704 5.71718 5.73978 5.78835 5.85085 5.87397 6.04813 6.07384 6.16724 6.34922 6.49525 6.55876 6.82778 7.42137 7.43096 7.62018 7.88976 8.02641 8.41528 9.01398 9.35251 9.83265 10.61635 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.002841 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.225985 B = 9852.425844 C =11805.887061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.016 4.016 3 C -0.079 4.079 4 O -0.193 6.193 5 C 0.247 3.753 6 C 0.017 3.983 7 C -0.132 4.132 8 C -0.076 4.076 9 C -0.143 4.143 10 C -0.111 4.111 11 C 0.227 3.773 12 N -0.721 5.721 13 C 0.110 3.890 14 C 0.430 3.570 15 O -0.595 6.595 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.170 4.170 26 N -0.474 5.474 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.215 0.785 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.274 0.726 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.550 -8.633 0.053 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 C -0.150 4.150 4 O -0.079 6.079 5 C 0.043 3.957 6 C 0.015 3.985 7 C -0.154 4.154 8 C -0.094 4.094 9 C -0.148 4.148 10 C -0.168 4.168 11 C 0.121 3.879 12 N -0.353 5.353 13 C -0.019 4.019 14 C 0.215 3.785 15 O -0.481 6.481 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.536 5.536 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.195 4.195 26 N -0.204 5.204 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.232 0.768 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.254 0.746 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.084 0.916 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.068 -9.365 0.053 20.350 hybrid contribution 0.816 1.624 0.005 1.817 sum -17.252 -7.741 0.059 18.909 Atomic orbital electron populations 1.20094 0.86453 1.03339 1.02865 1.21821 0.98185 0.88294 1.05436 1.24875 0.80062 1.01063 1.09007 1.84542 1.30345 1.23571 1.69407 1.23943 0.93178 0.78564 0.99972 1.16927 0.86749 0.90725 1.04130 1.20766 0.99428 0.90754 1.04438 1.20649 0.90711 0.99418 0.98659 1.19571 0.95834 0.91877 1.07529 1.20672 0.95424 0.98320 1.02348 1.17432 0.85242 0.91364 0.93896 1.44595 1.04640 1.06037 1.80026 1.20983 0.96742 0.82086 1.02056 1.19701 0.89086 0.84139 0.85561 1.90501 1.54527 1.45999 1.57090 1.41808 1.08645 1.05284 1.62784 1.19778 0.82600 0.92873 1.48092 0.87643 1.25326 1.00478 0.95145 0.96790 1.69620 1.34297 1.00146 1.49494 0.85757 0.81765 0.78737 0.77852 1.19120 1.20582 1.20588 1.20640 0.90070 0.99846 1.08915 1.70539 0.99909 1.30954 1.19010 0.90733 0.90722 0.90598 0.76832 0.85149 0.85403 0.91232 0.91518 0.91386 0.74616 0.90565 0.90580 0.77126 0.91642 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.42 36.00 0.38 -0.14 16 2 C -0.02 -0.18 7.10 -82.89 -0.59 -0.77 16 3 C -0.08 -0.84 12.08 29.43 0.36 -0.48 16 4 O -0.19 -2.63 10.52 4.07 0.04 -2.59 16 5 C 0.25 3.55 7.90 -13.89 -0.11 3.44 16 6 C 0.02 0.23 5.87 -105.01 -0.62 -0.38 16 7 C -0.13 -1.66 9.68 -39.16 -0.38 -2.04 16 8 C -0.08 -0.87 9.67 -39.67 -0.38 -1.25 16 9 C -0.14 -1.84 5.90 -104.34 -0.62 -2.46 16 10 C -0.11 -1.23 9.55 36.01 0.34 -0.89 16 11 C 0.23 3.35 6.63 -83.84 -0.56 2.79 16 12 N -0.72 -11.82 5.60 -59.85 -0.34 -12.16 16 13 C 0.11 1.91 5.39 -5.19 -0.03 1.88 16 14 C 0.43 9.73 7.85 -10.99 -0.09 9.64 16 15 O -0.59 -15.30 15.24 5.55 0.08 -15.22 16 16 N -0.55 -13.45 5.29 -10.96 -0.06 -13.51 16 17 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 18 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 20 N -0.90 -23.64 13.05 55.50 0.72 -22.92 16 21 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.17 -2.47 8.97 -38.97 -0.35 -2.82 16 26 N -0.47 -6.63 10.91 -7.97 -0.09 -6.72 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.22 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.13 1.53 7.83 -52.48 -0.41 1.11 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.81 6.55 -51.93 -0.34 0.47 16 35 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.41 7.11 5.42 -40.82 -0.22 6.89 16 37 H 0.08 1.22 7.95 -51.93 -0.41 0.80 16 38 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 39 H 0.40 9.20 7.90 -40.82 -0.32 8.88 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.13 1.85 6.57 -52.49 -0.34 1.51 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -31.46 356.07 -7.10 -38.56 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -4.93 Total: 15.04 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.88 Total: -1.27 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.24 Total: -55.30 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.13 Total: -17.81 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.46 -7.10 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127970686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.491 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds