Wall clock time and date at job start Tue Mar 31 2020 11:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34548 * 126.07963 * 2 1 4 4 O 1.34775 * 107.27332 * 179.77204 * 3 2 1 5 5 C 1.34425 * 107.69168 * 0.42029 * 4 3 2 6 6 C 1.47834 * 125.72423 * 179.83647 * 5 4 3 7 7 C 1.39618 * 120.10645 * 179.67608 * 6 5 4 8 8 C 1.37990 * 120.00342 * 180.02562 * 7 6 5 9 9 C 1.38247 * 120.22491 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.89080 * 180.02562 * 9 8 7 11 11 C 1.38995 * 120.21763 * 359.73850 * 9 8 7 12 12 N 1.39691 * 120.00472 * 180.25825 * 11 9 8 13 13 C 1.46502 * 120.00068 * 180.28013 * 12 11 9 14 14 C 1.50699 * 109.47065 * 180.02562 * 13 12 11 15 15 O 1.21292 * 120.00510 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00073 * 179.97438 * 14 13 12 17 17 C 1.37098 * 120.00131 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00227 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99855 * 179.97438 * 17 16 14 20 20 N 1.31417 * 119.99757 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46957 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47169 * 120.00295 * 21 19 17 24 24 H 1.48503 * 109.46818 * 240.00031 * 21 19 17 25 25 C 1.38671 * 119.98974 * 0.54226 * 11 9 8 26 26 N 1.31222 * 108.54703 * 359.57388 * 5 4 3 27 27 H 1.08997 * 109.47730 * 269.97736 * 1 2 3 28 28 H 1.09000 * 109.47743 * 29.98616 * 1 2 3 29 29 H 1.09009 * 109.46692 * 149.97979 * 1 2 3 30 30 H 1.08010 * 126.36006 * 0.03826 * 3 2 1 31 31 H 1.08003 * 120.00167 * 0.02562 * 7 6 5 32 32 H 1.07997 * 119.88630 * 179.97438 * 8 7 6 33 33 H 1.08996 * 109.47232 * 89.99431 * 10 9 8 34 34 H 1.09006 * 109.46935 * 209.99583 * 10 9 8 35 35 H 1.09000 * 109.46843 * 329.99263 * 10 9 8 36 36 H 0.97000 * 120.00265 * 0.27760 * 12 11 9 37 37 H 1.08997 * 109.46860 * 300.00010 * 13 12 11 38 38 H 1.08998 * 109.47322 * 60.00266 * 13 12 11 39 39 H 0.97003 * 120.00009 * 359.97438 * 16 14 13 40 40 H 0.96997 * 119.99179 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.11341 * 179.74814 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2993 1.0874 0.0000 4 8 3.5751 0.6529 0.0051 5 6 3.5490 -0.6910 -0.0012 6 6 4.7322 -1.5774 -0.0021 7 6 4.5685 -2.9639 -0.0022 8 6 5.6744 -3.7892 -0.0025 9 6 6.9466 -3.2482 -0.0033 10 6 8.1490 -4.1565 -0.0042 11 6 7.1202 -1.8691 -0.0092 12 7 8.4077 -1.3272 -0.0154 13 6 8.5907 0.1263 -0.0155 14 6 10.0631 0.4473 -0.0234 15 8 10.8794 -0.4498 -0.0280 16 7 10.4729 1.7312 -0.0253 17 6 11.8124 2.0232 -0.0331 18 1 12.5392 1.2244 -0.0372 19 6 12.2349 3.3470 -0.0356 20 7 11.3505 4.3190 -0.0301 21 14 14.0600 3.7449 -0.0469 22 1 14.8418 2.4824 -0.0511 23 1 14.3870 4.5344 -1.2613 24 1 14.4019 4.5342 1.1636 25 6 6.0152 -1.0313 -0.0030 26 7 2.2971 -1.0842 -0.0008 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5142 30 1 1.9734 2.1172 0.0006 31 1 3.5763 -3.3906 -0.0020 32 1 5.5456 -4.8615 -0.0021 33 1 8.4382 -4.3755 -1.0320 34 1 8.9758 -3.6654 0.5091 35 1 7.9028 -5.0857 0.5098 36 1 9.1806 -1.9133 -0.0196 37 1 8.1217 0.5515 -0.9028 38 1 8.1308 0.5505 0.8771 39 1 9.8201 2.4487 -0.0220 40 1 11.6455 5.2430 -0.0323 41 1 6.1479 0.0405 -0.0035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127970686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:24 Heat of formation + Delta-G solvation = -16.190912 kcal Electronic energy + Delta-G solvation = -24669.157409 eV Core-core repulsion = 20935.306734 eV Total energy + Delta-G solvation = -3733.850676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.28682 -40.89694 -40.02255 -36.67452 -36.19629 -35.86214 -34.36744 -33.38414 -32.09113 -31.00290 -29.01846 -28.30794 -27.26389 -26.29310 -23.85150 -23.24672 -21.99997 -21.68056 -21.06603 -20.02867 -19.05567 -17.95482 -17.70641 -17.28931 -17.06037 -16.43189 -16.41339 -16.26605 -15.79967 -15.55233 -15.13391 -14.95338 -14.79482 -14.44116 -14.14865 -13.97079 -13.88774 -13.85059 -13.56287 -13.20802 -13.14291 -12.98573 -12.94097 -12.47279 -12.30685 -12.14559 -12.08428 -12.07080 -11.60535 -11.60374 -11.22496 -10.56717 -10.25780 -10.11705 -9.23317 -8.53579 -8.35154 -6.03386 -0.34665 0.59442 0.86951 1.33072 1.40932 1.54737 1.71500 1.72667 1.89334 2.16916 2.37996 2.87175 2.90879 3.13712 3.15370 3.80964 3.90672 3.95509 4.07162 4.14923 4.26004 4.36163 4.38903 4.42726 4.53711 4.61439 4.75965 4.80404 4.83908 4.84914 4.85987 4.94543 4.99365 5.24250 5.28758 5.35987 5.41365 5.50975 5.55893 5.80244 5.89907 6.25971 6.47845 6.68637 6.74572 7.02243 7.42419 7.93841 8.63577 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.002841 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.225985 B = 9852.425844 C =11805.887061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.035 4.035 3 C -0.074 4.074 4 O -0.210 6.210 5 C 0.219 3.781 6 C 0.005 3.995 7 C -0.130 4.130 8 C -0.067 4.067 9 C -0.145 4.145 10 C -0.109 4.109 11 C 0.209 3.791 12 N -0.730 5.730 13 C 0.126 3.874 14 C 0.431 3.569 15 O -0.627 6.627 16 N -0.560 5.560 17 C -0.337 4.337 18 H 0.083 0.917 19 C -0.010 4.010 20 N -0.915 5.915 21 Si 0.995 3.005 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.180 4.180 26 N -0.490 5.490 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.256 0.744 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.408 0.592 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.031 -8.798 0.047 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.156 4.156 3 C -0.143 4.143 4 O -0.096 6.096 5 C 0.017 3.983 6 C 0.003 3.997 7 C -0.151 4.151 8 C -0.085 4.085 9 C -0.150 4.150 10 C -0.166 4.166 11 C 0.105 3.895 12 N -0.363 5.363 13 C -0.003 4.003 14 C 0.219 3.781 15 O -0.515 6.515 16 N -0.196 5.196 17 C -0.466 4.466 18 H 0.101 0.899 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.819 3.181 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.204 4.204 26 N -0.221 5.221 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.272 0.728 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.248 0.752 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.596 -9.528 0.048 21.790 hybrid contribution 1.107 1.627 0.009 1.968 sum -18.490 -7.901 0.056 20.107 Atomic orbital electron populations 1.20227 0.83767 1.04503 1.03890 1.22513 0.99923 0.87795 1.05406 1.25766 0.78853 1.02749 1.06962 1.84535 1.32026 1.23472 1.69547 1.24045 0.93482 0.78982 1.01822 1.17103 0.86642 0.91534 1.04397 1.20985 1.00275 0.90331 1.03529 1.20992 0.89552 1.01007 0.96946 1.19863 0.97122 0.91347 1.06675 1.20704 0.94194 0.98826 1.02867 1.17606 0.84376 0.92355 0.95213 1.44505 1.05200 1.05151 1.81466 1.20813 0.92609 0.83341 1.03503 1.20551 0.91136 0.83130 0.83324 1.90472 1.56311 1.46822 1.57923 1.41850 1.08050 1.06092 1.63598 1.19738 0.83520 0.93004 1.50341 0.89889 1.26101 1.04601 0.94537 0.95814 1.69677 1.35914 1.00548 1.49401 0.84836 0.76657 0.78252 0.78395 1.19630 1.19524 1.19540 1.20633 0.90399 0.99725 1.09689 1.70514 1.00138 1.32357 1.19053 0.89681 0.88074 0.90942 0.72843 0.84307 0.81994 0.90658 0.93006 0.88869 0.75237 0.89025 0.89048 0.76661 0.91054 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.42 71.23 0.74 -0.08 16 2 C -0.04 -0.75 7.10 41.36 0.29 -0.45 16 3 C -0.07 -1.43 12.08 66.97 0.81 -0.62 16 4 O -0.21 -5.64 10.52 -8.35 -0.09 -5.73 16 5 C 0.22 6.28 7.90 87.33 0.69 6.97 16 6 C 0.01 0.14 5.87 -20.11 -0.12 0.02 16 7 C -0.13 -3.11 9.68 22.54 0.22 -2.89 16 8 C -0.07 -1.39 9.67 22.21 0.21 -1.18 16 9 C -0.14 -3.56 5.90 -19.68 -0.12 -3.68 16 10 C -0.11 -2.28 9.55 71.24 0.68 -1.60 16 11 C 0.21 6.13 6.63 38.17 0.25 6.38 16 12 N -0.73 -24.19 5.60 -343.25 -1.92 -26.12 16 13 C 0.13 4.41 5.39 85.63 0.46 4.87 16 14 C 0.43 20.01 7.85 87.66 0.69 20.70 16 15 O -0.63 -33.26 15.24 -3.07 -0.05 -33.31 16 16 N -0.56 -28.06 5.29 -306.99 -1.62 -29.69 16 17 C -0.34 -18.64 9.68 84.04 0.81 -17.83 16 18 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 19 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 20 N -0.92 -48.29 13.05 21.67 0.28 -48.01 16 21 Si 1.00 41.86 29.55 68.60 2.03 43.89 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 25 C -0.18 -5.25 8.97 22.66 0.20 -5.05 16 26 N -0.49 -13.39 10.91 -293.19 -3.20 -16.58 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.26 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.14 3.06 7.83 -2.91 -0.02 3.03 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.25 6.55 -2.38 -0.02 1.23 16 35 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 36 H 0.41 14.36 5.42 -92.71 -0.50 13.86 16 37 H 0.09 2.93 7.95 -2.39 -0.02 2.91 16 38 H 0.09 2.93 7.95 -2.39 -0.02 2.91 16 39 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 40 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.13 3.65 6.57 -2.91 -0.02 3.63 16 Total: -1.00 -69.24 356.07 1.59 -67.65 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.14 Total: 42.37 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 6.30 Total: 5.52 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -6.46 Total: -120.40 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.13 Total: -39.04 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -69.24 1.59 -67.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127970686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.461 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds