Wall clock time and date at job start Tue Mar 31 2020 10:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86802 * 120.00070 * 2 1 4 4 H 1.48492 * 109.47211 * 240.00069 * 3 2 1 5 5 H 1.48497 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47037 * 119.99990 * 3 2 1 7 7 C 1.39018 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00064 * 191.59174 * 7 2 1 9 9 N 1.36913 * 120.00044 * 11.59272 * 7 2 1 10 10 C 1.34780 * 120.00151 * 43.47746 * 9 7 2 11 11 O 1.21598 * 119.99577 * 6.32609 * 10 9 7 12 12 C 1.47638 * 119.99884 * 186.32699 * 10 9 7 13 13 C 1.41156 * 126.30423 * 187.48604 * 12 10 9 14 14 C 1.36987 * 105.41736 * 179.84695 * 13 12 10 15 15 C 1.47330 * 126.62867 * 180.11629 * 14 13 12 16 16 C 1.36152 * 125.95359 * 180.31864 * 15 14 13 17 17 C 1.40872 * 106.73056 * 179.97438 * 16 15 14 18 18 C 1.34760 * 107.05790 * 0.02562 * 17 16 15 19 19 O 1.34326 * 108.70823 * 359.75384 * 18 17 16 20 20 N 1.36563 * 106.74463 * 0.40743 * 14 13 12 21 21 H 0.97003 * 125.02344 * 179.70454 * 20 14 13 22 22 N 1.28445 * 109.95523 * 359.73360 * 20 14 13 23 23 C 1.46494 * 119.99984 * 223.47833 * 9 7 2 24 24 C 1.55239 * 110.58171 * 61.61595 * 23 9 7 25 25 C 1.54887 * 102.58920 * 203.33895 * 24 23 9 26 26 C 1.54262 * 104.31493 * 37.93112 * 25 24 23 27 27 C 1.53876 * 106.59832 * 336.32714 * 26 25 24 28 28 H 0.97002 * 119.99631 * 359.97438 * 1 2 3 29 29 H 1.07998 * 127.29486 * 359.95938 * 13 12 10 30 30 H 1.08002 * 126.63467 * 0.02562 * 16 15 14 31 31 H 1.08001 * 126.46812 * 179.97438 * 17 16 15 32 32 H 1.08001 * 125.64809 * 180.02562 * 18 17 16 33 33 H 1.09005 * 110.43776 * 184.20006 * 23 9 7 34 34 H 1.08997 * 110.90188 * 85.04826 * 24 23 9 35 35 H 1.08999 * 110.76470 * 321.56842 * 24 23 9 36 36 H 1.09001 * 110.49147 * 279.18449 * 25 24 23 37 37 H 1.09000 * 110.48728 * 156.67471 * 25 24 23 38 38 H 1.09004 * 110.03665 * 95.60762 * 26 25 24 39 39 H 1.09003 * 110.03839 * 216.99072 * 26 25 24 40 40 H 1.08994 * 110.03468 * 119.28518 * 27 26 25 41 41 H 1.09006 * 110.03349 * 240.66716 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6964 -1.2124 5 1 1.2829 2.7464 0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0090 -1.2039 -0.0005 8 1 3.0724 -1.2136 0.1874 9 7 1.3453 -2.3774 -0.2393 10 6 0.4324 -2.4462 -1.2285 11 8 0.2802 -1.5039 -1.9819 12 6 -0.3827 -3.6655 -1.3972 13 6 -1.2641 -3.9405 -2.4650 14 6 -1.7878 -5.1773 -2.1957 15 6 -2.7632 -5.9165 -3.0159 16 6 -3.2796 -7.1437 -2.7317 17 6 -4.1661 -7.4632 -3.7789 18 6 -4.1478 -6.4282 -4.6418 19 8 -3.3033 -5.4934 -4.1756 20 7 -1.2361 -5.5899 -1.0165 21 1 -1.4280 -6.4331 -0.5770 22 7 -0.4261 -4.6961 -0.5751 23 6 1.6275 -3.5584 0.5803 24 6 1.2805 -3.2853 2.0686 25 6 2.1645 -4.3146 2.8157 26 6 3.4821 -4.3390 2.0139 27 6 3.1407 -3.8581 0.5926 28 1 -0.4850 0.8401 0.0004 29 1 -1.4785 -3.3102 -3.3154 30 1 -3.0540 -7.7540 -1.8696 31 1 -4.7494 -8.3672 -3.8729 32 1 -4.7209 -6.3596 -5.5547 33 1 1.0710 -4.4198 0.2110 34 1 0.2241 -3.4710 2.2620 35 1 1.5525 -2.2675 2.3483 36 1 1.6947 -5.2982 2.8075 37 1 2.3470 -3.9887 3.8397 38 1 4.2096 -3.6677 2.4704 39 1 3.8801 -5.3532 1.9801 40 1 3.7024 -2.9536 0.3595 41 1 3.3733 -4.6388 -0.1317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128282946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:14 Heat of formation + Delta-G solvation = 77.443143 kcal Electronic energy + Delta-G solvation = -26366.526208 eV Core-core repulsion = 22636.735809 eV Total energy + Delta-G solvation = -3729.790398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.74175 -41.92931 -38.46191 -36.49600 -33.33216 -33.29410 -32.12748 -31.54274 -30.92278 -28.25745 -27.92656 -26.65575 -25.24340 -22.93667 -22.40570 -21.67419 -20.45660 -19.86189 -19.59917 -19.18465 -18.40819 -16.79547 -16.25035 -16.22879 -15.88343 -15.14185 -14.82433 -14.74396 -14.33511 -13.78514 -13.46857 -13.35538 -13.04629 -12.91278 -12.81208 -12.61531 -12.47086 -12.20034 -11.48902 -11.07605 -10.86122 -10.80275 -10.76152 -10.53616 -10.37736 -10.32244 -10.24269 -10.12888 -9.80684 -9.75236 -9.08748 -8.77790 -8.69813 -8.18441 -7.92461 -6.99431 -6.03332 -3.78905 1.06698 2.18955 2.40903 2.51754 3.02146 3.35617 3.41649 3.41782 3.44853 4.29762 4.44088 4.77182 4.81876 4.82759 4.98332 5.11963 5.30034 5.38903 5.43620 5.53308 5.58032 5.61429 5.73198 5.86915 6.09200 6.13360 6.19735 6.23127 6.31521 6.32282 6.35221 6.50023 6.56880 6.61327 6.75549 6.81201 6.93025 6.99277 7.09922 7.19370 7.46190 7.69534 8.28547 8.38658 9.13727 9.27816 9.71797 10.38780 11.04436 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.004221 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.721984 B = 6632.267861 C = 8099.301314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.063 3.937 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.331 4.331 8 H 0.082 0.918 9 N -0.428 5.428 10 C 0.545 3.455 11 O -0.527 6.527 12 C 0.036 3.964 13 C -0.147 4.147 14 C 0.055 3.945 15 C 0.075 3.925 16 C -0.208 4.208 17 C -0.209 4.209 18 C -0.036 4.036 19 O -0.160 6.160 20 N -0.386 5.386 21 H 0.439 0.561 22 N -0.251 5.251 23 C 0.106 3.894 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.134 4.134 28 H 0.265 0.735 29 H 0.163 0.837 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.207 0.793 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 -15.651 -1.899 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.459 4.459 8 H 0.099 0.901 9 N -0.148 5.148 10 C 0.330 3.670 11 O -0.403 6.403 12 C -0.124 4.124 13 C -0.175 4.175 14 C -0.069 4.069 15 C 0.022 3.978 16 C -0.229 4.229 17 C -0.228 4.228 18 C -0.105 4.105 19 O -0.054 6.054 20 N -0.101 5.101 21 H 0.283 0.717 22 N -0.086 5.086 23 C 0.000 4.000 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.173 4.173 28 H 0.075 0.925 29 H 0.180 0.820 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.223 0.777 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.566 -15.070 -1.468 15.815 hybrid contribution -0.326 0.345 -0.340 0.584 sum -4.892 -14.726 -1.808 15.622 Atomic orbital electron populations 1.69836 1.06366 1.27328 1.42748 1.25292 0.94935 0.99358 0.95189 0.86262 0.79218 0.82019 0.78481 1.19967 1.21212 1.20326 1.18891 0.92274 0.82994 1.51701 0.90080 1.43047 1.36612 1.09190 1.25960 1.16654 0.83593 0.83931 0.82788 1.90612 1.68438 1.36500 1.44709 1.22942 1.00827 0.95480 0.93153 1.21862 0.99279 0.94661 1.01716 1.18182 1.01488 0.96091 0.91160 1.19003 0.98072 0.93434 0.87249 1.21701 1.02279 0.96499 1.02388 1.21685 1.03766 1.01306 0.96048 1.24167 0.96666 0.88411 1.01220 1.84123 1.47066 1.42153 1.32070 1.43625 1.32368 1.17935 1.16148 0.71728 1.73580 1.11095 1.00157 1.23792 1.22745 0.94380 0.91378 0.91478 1.22692 0.98078 0.99488 0.95277 1.22285 0.96223 0.99186 0.98321 1.22024 0.97447 0.99737 0.96228 1.22453 0.98381 1.00980 0.95450 0.92512 0.81982 0.83455 0.83147 0.77684 0.86326 0.92752 0.90277 0.92598 0.92665 0.92425 0.93047 0.90566 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.76 11.38 55.50 0.63 -24.13 16 2 C 0.06 1.76 4.61 -17.45 -0.08 1.68 16 3 Si 0.91 21.87 29.57 -169.99 -5.03 16.85 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.33 -9.05 7.75 -14.99 -0.12 -9.17 16 8 H 0.08 2.13 6.39 -52.49 -0.34 1.79 16 9 N -0.43 -11.02 2.56 -106.90 -0.27 -11.29 16 10 C 0.54 14.70 6.76 -12.42 -0.08 14.61 16 11 O -0.53 -16.09 14.73 5.28 0.08 -16.01 16 12 C 0.04 0.81 6.80 -82.89 -0.56 0.24 16 13 C -0.15 -2.90 10.77 -38.93 -0.42 -3.32 16 14 C 0.06 0.89 7.10 -82.52 -0.59 0.30 16 15 C 0.07 1.03 7.17 -36.64 -0.26 0.77 16 16 C -0.21 -2.27 10.84 -39.34 -0.43 -2.69 16 17 C -0.21 -1.96 10.88 -39.82 -0.43 -2.39 16 18 C -0.04 -0.35 12.08 29.50 0.36 0.01 16 19 O -0.16 -2.16 10.68 4.44 0.05 -2.12 16 20 N -0.39 -5.70 6.90 33.25 0.23 -5.47 16 21 H 0.44 4.50 8.96 -190.45 -1.71 2.79 16 22 N -0.25 -4.74 8.61 33.35 0.29 -4.45 16 23 C 0.11 2.23 2.97 -66.08 -0.20 2.04 16 24 C -0.12 -2.32 6.48 -24.55 -0.16 -2.48 16 25 C -0.12 -1.91 6.82 -25.08 -0.17 -2.09 16 26 C -0.12 -1.80 6.80 -25.61 -0.17 -1.98 16 27 C -0.13 -2.49 6.41 -25.61 -0.16 -2.66 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.16 3.16 8.06 -52.49 -0.42 2.74 16 30 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 2.41 4.02 -90.61 -0.36 2.05 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.78 7.38 -51.93 -0.38 1.39 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.55 6.08 -51.93 -0.32 1.23 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -34.49 342.19 -8.82 -43.31 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.47 Total: 5.27 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.48 Total: -7.13 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.87 Total: -45.34 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.13 Total: -18.12 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.49 -8.82 -43.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128282946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.753 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds