Wall clock time and date at job start Tue Mar 31 2020 10:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86802 * 120.00070 * 2 1 4 4 H 1.48492 * 109.47211 * 240.00069 * 3 2 1 5 5 H 1.48497 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47037 * 119.99990 * 3 2 1 7 7 C 1.39018 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00064 * 191.59174 * 7 2 1 9 9 N 1.36913 * 120.00044 * 11.59272 * 7 2 1 10 10 C 1.34780 * 120.00151 * 43.47746 * 9 7 2 11 11 O 1.21598 * 119.99577 * 6.32609 * 10 9 7 12 12 C 1.47638 * 119.99884 * 186.32699 * 10 9 7 13 13 C 1.41156 * 126.30423 * 187.48604 * 12 10 9 14 14 C 1.36987 * 105.41736 * 179.84695 * 13 12 10 15 15 C 1.47330 * 126.62867 * 180.11629 * 14 13 12 16 16 C 1.36152 * 125.95359 * 180.31864 * 15 14 13 17 17 C 1.40872 * 106.73056 * 179.97438 * 16 15 14 18 18 C 1.34760 * 107.05790 * 0.02562 * 17 16 15 19 19 O 1.34326 * 108.70823 * 359.75384 * 18 17 16 20 20 N 1.36563 * 106.74463 * 0.40743 * 14 13 12 21 21 H 0.97003 * 125.02344 * 179.70454 * 20 14 13 22 22 N 1.28445 * 109.95523 * 359.73360 * 20 14 13 23 23 C 1.46494 * 119.99984 * 223.47833 * 9 7 2 24 24 C 1.55239 * 110.58171 * 61.61595 * 23 9 7 25 25 C 1.54887 * 102.58920 * 203.33895 * 24 23 9 26 26 C 1.54262 * 104.31493 * 37.93112 * 25 24 23 27 27 C 1.53876 * 106.59832 * 336.32714 * 26 25 24 28 28 H 0.97002 * 119.99631 * 359.97438 * 1 2 3 29 29 H 1.07998 * 127.29486 * 359.95938 * 13 12 10 30 30 H 1.08002 * 126.63467 * 0.02562 * 16 15 14 31 31 H 1.08001 * 126.46812 * 179.97438 * 17 16 15 32 32 H 1.08001 * 125.64809 * 180.02562 * 18 17 16 33 33 H 1.09005 * 110.43776 * 184.20006 * 23 9 7 34 34 H 1.08997 * 110.90188 * 85.04826 * 24 23 9 35 35 H 1.08999 * 110.76470 * 321.56842 * 24 23 9 36 36 H 1.09001 * 110.49147 * 279.18449 * 25 24 23 37 37 H 1.09000 * 110.48728 * 156.67471 * 25 24 23 38 38 H 1.09004 * 110.03665 * 95.60762 * 26 25 24 39 39 H 1.09003 * 110.03839 * 216.99072 * 26 25 24 40 40 H 1.08994 * 110.03468 * 119.28518 * 27 26 25 41 41 H 1.09006 * 110.03349 * 240.66716 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6964 -1.2124 5 1 1.2829 2.7464 0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0090 -1.2039 -0.0005 8 1 3.0724 -1.2136 0.1874 9 7 1.3453 -2.3774 -0.2393 10 6 0.4324 -2.4462 -1.2285 11 8 0.2802 -1.5039 -1.9819 12 6 -0.3827 -3.6655 -1.3972 13 6 -1.2641 -3.9405 -2.4650 14 6 -1.7878 -5.1773 -2.1957 15 6 -2.7632 -5.9165 -3.0159 16 6 -3.2796 -7.1437 -2.7317 17 6 -4.1661 -7.4632 -3.7789 18 6 -4.1478 -6.4282 -4.6418 19 8 -3.3033 -5.4934 -4.1756 20 7 -1.2361 -5.5899 -1.0165 21 1 -1.4280 -6.4331 -0.5770 22 7 -0.4261 -4.6961 -0.5751 23 6 1.6275 -3.5584 0.5803 24 6 1.2805 -3.2853 2.0686 25 6 2.1645 -4.3146 2.8157 26 6 3.4821 -4.3390 2.0139 27 6 3.1407 -3.8581 0.5926 28 1 -0.4850 0.8401 0.0004 29 1 -1.4785 -3.3102 -3.3154 30 1 -3.0540 -7.7540 -1.8696 31 1 -4.7494 -8.3672 -3.8729 32 1 -4.7209 -6.3596 -5.5547 33 1 1.0710 -4.4198 0.2110 34 1 0.2241 -3.4710 2.2620 35 1 1.5525 -2.2675 2.3483 36 1 1.6947 -5.2982 2.8075 37 1 2.3470 -3.9887 3.8397 38 1 4.2096 -3.6677 2.4704 39 1 3.8801 -5.3532 1.9801 40 1 3.7024 -2.9536 0.3595 41 1 3.3733 -4.6388 -0.1317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128282946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:13 Heat of formation + Delta-G solvation = 54.610792 kcal Electronic energy + Delta-G solvation = -26367.516293 eV Core-core repulsion = 22636.735809 eV Total energy + Delta-G solvation = -3730.780483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.81874 -43.19140 -40.27961 -38.24253 -35.27350 -34.29627 -33.68735 -32.96408 -32.57508 -29.46950 -29.30389 -28.26883 -27.18974 -24.46990 -23.68370 -22.72053 -21.60052 -21.43900 -21.02787 -20.83744 -19.67391 -18.32822 -17.85133 -17.40361 -17.26223 -16.72970 -16.35109 -16.22319 -15.84773 -15.43758 -15.07807 -14.88782 -14.70428 -14.18506 -14.09881 -13.82474 -13.63380 -13.37352 -13.32249 -12.95903 -12.69637 -12.62972 -12.37868 -12.14301 -11.95377 -11.90355 -11.75334 -11.28711 -11.17045 -10.81910 -10.78068 -10.62916 -10.33727 -10.23591 -9.04596 -9.01261 -8.15893 -5.95304 -0.02049 0.82809 1.34391 1.38260 1.40437 1.47983 1.51589 1.88263 2.28719 2.42449 2.85952 3.08825 3.33749 3.51474 3.52510 3.96191 3.98347 4.02728 4.07881 4.22351 4.30664 4.53770 4.59750 4.72715 4.81016 4.85518 4.87449 4.92143 4.93937 4.98584 5.04383 5.15094 5.21671 5.25485 5.31346 5.44319 5.54849 5.60020 5.63730 5.70140 5.97856 6.13767 6.25032 6.85474 7.06105 7.25850 7.68959 8.35747 8.92294 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.004221 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.721984 B = 6632.267861 C = 8099.301314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.009 3.991 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.342 4.342 8 H 0.086 0.914 9 N -0.439 5.439 10 C 0.531 3.469 11 O -0.582 6.582 12 C 0.002 3.998 13 C -0.187 4.187 14 C 0.095 3.905 15 C 0.019 3.981 16 C -0.176 4.176 17 C -0.216 4.216 18 C -0.025 4.025 19 O -0.188 6.188 20 N -0.355 5.355 21 H 0.463 0.537 22 N -0.249 5.249 23 C 0.095 3.905 24 C -0.116 4.116 25 C -0.109 4.109 26 C -0.109 4.109 27 C -0.133 4.133 28 H 0.259 0.741 29 H 0.148 0.852 30 H 0.177 0.823 31 H 0.185 0.815 32 H 0.245 0.755 33 H 0.131 0.869 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 -19.631 -1.213 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.196 4.196 3 Si 0.800 3.200 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.179 1.179 7 C -0.470 4.470 8 H 0.104 0.896 9 N -0.158 5.158 10 C 0.318 3.682 11 O -0.463 6.463 12 C -0.156 4.156 13 C -0.215 4.215 14 C -0.031 4.031 15 C -0.032 4.032 16 C -0.196 4.196 17 C -0.234 4.234 18 C -0.093 4.093 19 O -0.084 6.084 20 N -0.073 5.073 21 H 0.312 0.688 22 N -0.085 5.085 23 C -0.009 4.009 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.171 4.171 28 H 0.068 0.932 29 H 0.166 0.834 30 H 0.195 0.805 31 H 0.202 0.798 32 H 0.261 0.739 33 H 0.147 0.853 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.030 -19.104 -0.714 19.768 hybrid contribution -0.350 1.306 -0.687 1.517 sum -5.380 -17.798 -1.401 18.646 Atomic orbital electron populations 1.69986 1.08036 1.27475 1.45094 1.26187 0.95645 1.02864 0.94913 0.85293 0.77994 0.77740 0.78983 1.20305 1.21348 1.17934 1.19206 0.92702 0.84117 1.50982 0.89648 1.43317 1.36121 1.10094 1.26274 1.17295 0.83819 0.84798 0.82256 1.90537 1.70155 1.38916 1.46644 1.22261 1.02508 0.95435 0.95433 1.21769 1.01126 0.96867 1.01760 1.18210 0.99911 0.94385 0.90607 1.18851 1.00611 0.95034 0.88737 1.22211 0.99926 0.94678 1.02823 1.22148 1.03712 1.02425 0.95146 1.25156 0.94740 0.87395 1.01977 1.84112 1.48087 1.43847 1.32343 1.43557 1.30441 1.17846 1.15456 0.68785 1.73358 1.12049 0.99922 1.23202 1.23079 0.96457 0.89939 0.91449 1.22598 0.98435 0.99094 0.95294 1.22246 0.95199 0.98762 0.98520 1.22004 0.97491 1.01588 0.93555 1.22428 0.95983 1.00388 0.98321 0.93233 0.83441 0.80517 0.79765 0.73944 0.85291 0.93820 0.93721 0.90169 0.90914 0.91965 0.89773 0.93069 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.34 11.38 21.68 0.25 -55.09 16 2 C 0.01 0.56 4.61 84.95 0.39 0.95 16 3 Si 0.98 46.89 29.57 68.60 2.03 48.92 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.34 -19.70 7.75 84.09 0.65 -19.05 16 8 H 0.09 4.69 6.39 -2.91 -0.02 4.67 16 9 N -0.44 -23.84 2.56 -610.39 -1.56 -25.40 16 10 C 0.53 30.65 6.76 86.72 0.59 31.24 16 11 O -0.58 -38.48 14.73 -4.02 -0.06 -38.54 16 12 C 0.00 0.10 6.80 42.33 0.29 0.39 16 13 C -0.19 -7.84 10.77 22.69 0.24 -7.60 16 14 C 0.10 3.03 7.10 40.51 0.29 3.31 16 15 C 0.02 0.49 7.17 24.18 0.17 0.66 16 16 C -0.18 -3.12 10.84 22.43 0.24 -2.88 16 17 C -0.22 -3.04 10.88 22.12 0.24 -2.80 16 18 C -0.02 -0.40 12.08 67.02 0.81 0.41 16 19 O -0.19 -4.86 10.68 -7.04 -0.08 -4.94 16 20 N -0.35 -9.96 6.90 -48.73 -0.34 -10.29 16 21 H 0.46 7.98 8.96 -220.00 -1.97 6.00 16 22 N -0.25 -9.43 8.61 -48.40 -0.42 -9.84 16 23 C 0.10 4.09 2.97 46.19 0.14 4.23 16 24 C -0.12 -4.65 6.48 32.01 0.21 -4.44 16 25 C -0.11 -3.15 6.82 31.67 0.22 -2.93 16 26 C -0.11 -3.07 6.80 31.32 0.21 -2.86 16 27 C -0.13 -4.88 6.41 31.32 0.20 -4.68 16 28 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.15 6.40 8.06 -2.91 -0.02 6.37 16 30 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.24 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.13 5.26 4.02 -52.43 -0.21 5.05 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 2.08 7.38 -2.39 -0.02 2.06 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 2.12 6.08 -2.39 -0.01 2.11 16 41 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -83.61 342.19 3.62 -79.99 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -1.09 Total: 21.23 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 4.89 Total: -6.03 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -2.07 Total: -100.63 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.13 Total: -43.48 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -83.61 3.62 -79.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128282946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.598 kcal (2) G-P(sol) polarization free energy of solvation -83.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds