Wall clock time and date at job start Tue Mar 31 2020 11:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 120.00434 * 2 1 4 4 C 1.38212 * 120.00040 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00194 * 359.97438 * 4 3 2 6 6 C 1.38212 * 119.99634 * 359.74945 * 5 4 3 7 7 C 1.38214 * 119.99628 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00077 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47108 * 34.77307 * 8 7 2 10 10 C 1.53007 * 109.47148 * 274.76728 * 8 7 2 11 11 N 1.46500 * 109.47220 * 154.77240 * 8 7 2 12 12 C 1.39927 * 120.00236 * 208.73157 * 11 8 7 13 13 C 1.38718 * 120.07418 * 0.24071 * 12 11 8 14 14 C 1.38218 * 120.01393 * 180.30331 * 13 12 11 15 15 C 1.38535 * 120.17504 * 359.45096 * 14 13 12 16 16 F 1.35100 * 119.91991 * 180.25309 * 15 14 13 17 17 C 1.38351 * 120.15955 * 0.27815 * 15 14 13 18 18 C 1.38732 * 119.98114 * 359.97438 * 17 15 14 19 19 O 1.35796 * 120.08627 * 179.97438 * 18 17 15 20 20 C 1.34797 * 117.00323 * 354.71118 * 19 18 17 21 21 H 1.08003 * 120.00082 * 354.64217 * 20 19 18 22 22 C 1.38627 * 120.00132 * 174.64991 * 20 19 18 23 23 N 1.31577 * 119.99814 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99922 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47294 * 59.99815 * 24 22 20 26 26 H 1.48504 * 109.47207 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47253 * 299.99634 * 24 22 20 28 28 H 1.08997 * 109.47106 * 270.02704 * 1 2 3 29 29 H 1.09006 * 109.46734 * 30.02229 * 1 2 3 30 30 H 1.08997 * 109.47370 * 150.02612 * 1 2 3 31 31 H 1.07998 * 119.99521 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99613 * 180.02562 * 4 3 2 33 33 H 1.07993 * 119.99727 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.99739 * 180.28140 * 6 5 4 35 35 H 1.08999 * 109.46998 * 179.97438 * 10 8 7 36 36 H 1.08992 * 109.47107 * 300.00372 * 10 8 7 37 37 H 1.09003 * 109.46776 * 60.00645 * 10 8 7 38 38 H 0.96999 * 120.00027 * 28.72064 * 11 8 7 39 39 H 1.07996 * 119.99836 * 0.02969 * 13 12 11 40 40 H 1.07998 * 119.91382 * 179.73254 * 14 13 12 41 41 H 1.08000 * 120.01188 * 179.97438 * 17 15 14 42 42 H 0.96999 * 119.99741 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0074 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 1 0.5320 -2.3947 -0.5859 10 6 1.0850 -2.8835 1.4381 11 7 2.2825 -3.5499 -0.5876 12 6 1.6895 -4.6336 -1.2447 13 6 0.3083 -4.7148 -1.3446 14 6 -0.2764 -5.7891 -1.9885 15 6 0.5138 -6.7812 -2.5455 16 9 -0.0630 -7.8263 -3.1782 17 6 1.8923 -6.7046 -2.4551 18 6 2.4859 -5.6320 -1.8057 19 8 3.8387 -5.5550 -1.7153 20 6 4.5439 -6.6056 -2.1798 21 1 4.0305 -7.4927 -2.5201 22 6 5.9284 -6.5475 -2.2207 23 7 6.5540 -5.4666 -1.8064 24 14 6.9057 -8.0037 -2.8638 25 1 6.5166 -8.2788 -4.2702 26 1 8.3564 -7.6915 -2.8042 27 1 6.6214 -9.1983 -2.0288 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 5.3517 -0.0002 0.0024 34 1 4.1205 -2.1324 0.0128 35 1 0.5396 -3.8272 1.4380 36 1 1.9975 -2.9908 2.0244 37 1 0.4614 -2.1039 1.8756 38 1 3.2486 -3.4924 -0.5216 39 1 -0.3105 -3.9408 -0.9152 40 1 -1.3520 -5.8528 -2.0615 41 1 2.5060 -7.4797 -2.8899 42 1 7.5227 -5.4258 -1.8354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130493682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:00 Heat of formation + Delta-G solvation = -20.730265 kcal Electronic energy + Delta-G solvation = -25782.536853 eV Core-core repulsion = 22028.569374 eV Total energy + Delta-G solvation = -3753.967478 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.05074 -39.93241 -39.01049 -36.76715 -35.36084 -32.98138 -32.31660 -31.38081 -29.39990 -29.17711 -27.25109 -26.77885 -25.39477 -23.72486 -22.21176 -21.79562 -20.83232 -19.97112 -18.19353 -17.74933 -16.75635 -16.27098 -15.57029 -15.28452 -15.05961 -14.84426 -14.71410 -14.25079 -14.20892 -14.06386 -13.68392 -13.60734 -13.27130 -13.08754 -13.00096 -12.80087 -12.35814 -12.16704 -12.13987 -11.89577 -11.82603 -11.64912 -11.32897 -11.26111 -10.89754 -10.83111 -10.62953 -10.49659 -10.31836 -9.62126 -9.33344 -8.86245 -8.70422 -8.51170 -7.74878 -6.49443 -6.46205 -4.04353 1.40928 1.47400 2.11201 2.23544 3.12876 3.13639 3.15915 3.80299 3.91451 3.99838 4.45730 4.70608 4.85767 4.95262 4.97108 5.05318 5.13081 5.23010 5.27426 5.34471 5.47317 5.54825 5.57494 5.62774 5.70484 5.78129 5.81870 5.86278 6.00338 6.06169 6.12030 6.18324 6.36050 6.41209 6.53423 6.57282 6.63324 6.72678 6.81315 7.02054 7.08446 7.09788 7.23773 7.61662 7.91477 8.03613 8.38432 8.97235 9.63094 10.68351 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.004641 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.128317 B = 6032.077405 C = 8298.380397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.123 4.123 5 C -0.119 4.119 6 C -0.102 4.102 7 C -0.085 4.085 8 C 0.192 3.808 9 H 0.088 0.912 10 C -0.162 4.162 11 N -0.740 5.740 12 C 0.156 3.844 13 C -0.148 4.148 14 C -0.195 4.195 15 C 0.086 3.914 16 F -0.158 7.158 17 C -0.240 4.240 18 C 0.121 3.879 19 O -0.176 6.176 20 C -0.386 4.386 21 H 0.091 0.909 22 C 0.041 3.959 23 N -0.863 5.863 24 Si 0.939 3.061 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.408 0.592 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.006 10.421 4.820 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.085 4.085 8 C 0.086 3.914 9 H 0.105 0.895 10 C -0.221 4.221 11 N -0.375 5.375 12 C 0.055 3.945 13 C -0.172 4.172 14 C -0.215 4.215 15 C 0.065 3.935 16 F -0.137 7.137 17 C -0.261 4.261 18 C 0.066 3.934 19 O -0.080 6.080 20 C -0.462 4.462 21 H 0.108 0.892 22 C -0.163 4.163 23 N -0.499 5.499 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.246 0.754 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.736 10.736 4.966 14.705 hybrid contribution 0.879 -0.948 -0.521 1.394 sum -7.857 9.788 4.445 13.316 Atomic orbital electron populations 1.20874 0.91403 1.02917 1.02278 1.19639 0.95870 0.92404 1.00382 1.20931 0.94250 0.97121 1.01801 1.21099 0.94289 0.97921 1.00775 1.21150 1.00077 0.92353 1.00171 1.21068 0.93721 0.98668 0.98567 1.19882 0.93968 0.94219 1.00460 1.19644 0.93486 0.84121 0.94198 0.89465 1.22263 1.01975 1.01631 0.96215 1.44554 1.08511 1.22121 1.62346 1.17075 0.90994 0.88853 0.97613 1.19949 0.91529 0.99712 1.05969 1.20292 0.98716 0.96171 1.06314 1.17234 0.90805 0.86397 0.99091 1.91378 1.85106 1.56582 1.80607 1.20797 0.92980 1.02886 1.09467 1.18600 0.85479 0.93026 0.96328 1.83895 1.10826 1.41689 1.71612 1.21228 0.88519 0.93115 1.43380 0.89203 1.25225 0.95693 0.98489 0.96912 1.70005 1.09389 1.27002 1.43460 0.85798 0.78423 0.79919 0.79456 1.19495 1.20309 1.19491 0.91105 0.91674 0.91102 0.86336 0.86369 0.85987 0.85416 0.91712 0.92233 0.92256 0.75388 0.86128 0.86549 0.84463 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.41 36.01 0.34 -0.77 16 2 C -0.08 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 4 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 5 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 6 C -0.10 -1.54 9.25 -39.58 -0.37 -1.90 16 7 C -0.08 -1.19 5.05 -104.62 -0.53 -1.72 16 8 C 0.19 2.73 2.08 -69.08 -0.14 2.58 16 9 H 0.09 1.17 4.27 -51.93 -0.22 0.95 16 10 C -0.16 -2.06 9.50 37.16 0.35 -1.71 16 11 N -0.74 -13.39 5.12 -53.11 -0.27 -13.66 16 12 C 0.16 3.12 6.67 -83.52 -0.56 2.57 16 13 C -0.15 -2.58 9.21 -39.41 -0.36 -2.94 16 14 C -0.19 -3.49 10.02 -39.48 -0.40 -3.88 16 15 C 0.09 1.74 7.29 -39.43 -0.29 1.45 16 16 F -0.16 -3.12 17.26 2.25 0.04 -3.08 16 17 C -0.24 -5.38 9.11 -39.36 -0.36 -5.74 16 18 C 0.12 2.84 6.67 -38.93 -0.26 2.58 16 19 O -0.18 -4.73 9.00 0.00 0.00 -4.73 16 20 C -0.39 -10.50 9.44 30.88 0.29 -10.20 16 21 H 0.09 2.31 5.29 -52.48 -0.28 2.03 16 22 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -24.23 13.67 55.48 0.76 -23.47 16 24 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.07 0.67 6.02 -51.93 -0.31 0.35 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.13 2.11 6.09 -52.49 -0.32 1.79 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 38 H 0.41 8.10 5.65 -40.82 -0.23 7.87 16 39 H 0.12 1.74 6.16 -52.49 -0.32 1.41 16 40 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.14 3.13 5.70 -52.49 -0.30 2.83 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -29.19 351.01 -8.29 -37.47 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -4.91 Total: 12.82 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -4.17 Total: -25.93 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.49 Total: -37.14 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.00 Total: -4.73 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.19 -8.29 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130493682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.744 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds