Wall clock time and date at job start Tue Mar 31 2020 11:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 120.00434 * 2 1 4 4 C 1.38212 * 120.00040 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00194 * 359.97438 * 4 3 2 6 6 C 1.38212 * 119.99634 * 359.74945 * 5 4 3 7 7 C 1.38214 * 119.99628 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00077 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47108 * 34.77307 * 8 7 2 10 10 C 1.53007 * 109.47148 * 274.76728 * 8 7 2 11 11 N 1.46500 * 109.47220 * 154.77240 * 8 7 2 12 12 C 1.39927 * 120.00236 * 208.73157 * 11 8 7 13 13 C 1.38718 * 120.07418 * 0.24071 * 12 11 8 14 14 C 1.38218 * 120.01393 * 180.30331 * 13 12 11 15 15 C 1.38535 * 120.17504 * 359.45096 * 14 13 12 16 16 F 1.35100 * 119.91991 * 180.25309 * 15 14 13 17 17 C 1.38351 * 120.15955 * 0.27815 * 15 14 13 18 18 C 1.38732 * 119.98114 * 359.97438 * 17 15 14 19 19 O 1.35796 * 120.08627 * 179.97438 * 18 17 15 20 20 C 1.34797 * 117.00323 * 354.71118 * 19 18 17 21 21 H 1.08003 * 120.00082 * 354.64217 * 20 19 18 22 22 C 1.38627 * 120.00132 * 174.64991 * 20 19 18 23 23 N 1.31577 * 119.99814 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99922 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47294 * 59.99815 * 24 22 20 26 26 H 1.48504 * 109.47207 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47253 * 299.99634 * 24 22 20 28 28 H 1.08997 * 109.47106 * 270.02704 * 1 2 3 29 29 H 1.09006 * 109.46734 * 30.02229 * 1 2 3 30 30 H 1.08997 * 109.47370 * 150.02612 * 1 2 3 31 31 H 1.07998 * 119.99521 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99613 * 180.02562 * 4 3 2 33 33 H 1.07993 * 119.99727 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.99739 * 180.28140 * 6 5 4 35 35 H 1.08999 * 109.46998 * 179.97438 * 10 8 7 36 36 H 1.08992 * 109.47107 * 300.00372 * 10 8 7 37 37 H 1.09003 * 109.46776 * 60.00645 * 10 8 7 38 38 H 0.96999 * 120.00027 * 28.72064 * 11 8 7 39 39 H 1.07996 * 119.99836 * 0.02969 * 13 12 11 40 40 H 1.07998 * 119.91382 * 179.73254 * 14 13 12 41 41 H 1.08000 * 120.01188 * 179.97438 * 17 15 14 42 42 H 0.96999 * 119.99741 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0074 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 1 0.5320 -2.3947 -0.5859 10 6 1.0850 -2.8835 1.4381 11 7 2.2825 -3.5499 -0.5876 12 6 1.6895 -4.6336 -1.2447 13 6 0.3083 -4.7148 -1.3446 14 6 -0.2764 -5.7891 -1.9885 15 6 0.5138 -6.7812 -2.5455 16 9 -0.0630 -7.8263 -3.1782 17 6 1.8923 -6.7046 -2.4551 18 6 2.4859 -5.6320 -1.8057 19 8 3.8387 -5.5550 -1.7153 20 6 4.5439 -6.6056 -2.1798 21 1 4.0305 -7.4927 -2.5201 22 6 5.9284 -6.5475 -2.2207 23 7 6.5540 -5.4666 -1.8064 24 14 6.9057 -8.0037 -2.8638 25 1 6.5166 -8.2788 -4.2702 26 1 8.3564 -7.6915 -2.8042 27 1 6.6214 -9.1983 -2.0288 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 5.3517 -0.0002 0.0024 34 1 4.1205 -2.1324 0.0128 35 1 0.5396 -3.8272 1.4380 36 1 1.9975 -2.9908 2.0244 37 1 0.4614 -2.1039 1.8756 38 1 3.2486 -3.4924 -0.5216 39 1 -0.3105 -3.9408 -0.9152 40 1 -1.3520 -5.8528 -2.0615 41 1 2.5060 -7.4797 -2.8899 42 1 7.5227 -5.4258 -1.8354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130493682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:59 Heat of formation + Delta-G solvation = -35.634615 kcal Electronic energy + Delta-G solvation = -25783.183154 eV Core-core repulsion = 22028.569374 eV Total energy + Delta-G solvation = -3754.613779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.63455 -41.18774 -40.44974 -38.37002 -36.72764 -34.30023 -33.93833 -32.60521 -30.95745 -30.33878 -28.68149 -27.70599 -27.29686 -24.85243 -23.68282 -23.17947 -22.07049 -21.14943 -20.00511 -19.37008 -18.14561 -17.59071 -16.98155 -16.86094 -16.45353 -16.33714 -15.99430 -15.81032 -15.49209 -15.32232 -15.21757 -14.99263 -14.79239 -14.22000 -14.03993 -13.99905 -13.80776 -13.55092 -13.29650 -13.12237 -13.03030 -12.85247 -12.76217 -12.56121 -12.38991 -12.22662 -12.05853 -11.83932 -11.52222 -11.46150 -10.81870 -10.78619 -9.70808 -9.48133 -9.42806 -8.47415 -8.04054 -6.09843 0.42288 0.47505 0.48949 0.62537 1.33673 1.42753 1.47945 2.15267 2.55375 2.76914 2.85704 3.11337 3.32137 3.64163 3.67560 3.90051 4.03070 4.03811 4.17332 4.25545 4.27145 4.39959 4.49418 4.51085 4.63806 4.65008 4.83694 4.88076 4.91115 4.97787 5.01642 5.03149 5.09893 5.12603 5.29504 5.33055 5.39824 5.44707 5.47156 5.56572 5.63672 5.70507 5.96303 6.05224 6.13375 6.57955 6.78478 6.98151 7.75388 8.74223 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.004641 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.128317 B = 6032.077405 C = 8298.380397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.138 4.138 6 C -0.130 4.130 7 C -0.100 4.100 8 C 0.190 3.810 9 H 0.106 0.894 10 C -0.156 4.156 11 N -0.744 5.744 12 C 0.155 3.845 13 C -0.137 4.137 14 C -0.161 4.161 15 C 0.064 3.936 16 F -0.155 7.155 17 C -0.246 4.246 18 C 0.078 3.922 19 O -0.217 6.217 20 C -0.409 4.409 21 H 0.092 0.908 22 C -0.015 4.015 23 N -0.912 5.912 24 Si 1.010 2.990 25 H -0.262 1.262 26 H -0.270 1.270 27 H -0.261 1.261 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.394 0.606 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.121 0.879 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 12.079 5.124 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.100 4.100 8 C 0.086 3.914 9 H 0.123 0.877 10 C -0.214 4.214 11 N -0.376 5.376 12 C 0.053 3.947 13 C -0.160 4.160 14 C -0.181 4.181 15 C 0.043 3.957 16 F -0.134 7.134 17 C -0.267 4.267 18 C 0.025 3.975 19 O -0.124 6.124 20 C -0.485 4.485 21 H 0.109 0.891 22 C -0.213 4.213 23 N -0.550 5.550 24 Si 0.830 3.170 25 H -0.187 1.187 26 H -0.194 1.194 27 H -0.185 1.185 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.230 0.770 39 H 0.182 0.818 40 H 0.177 0.823 41 H 0.139 0.861 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.251 12.409 5.283 18.221 hybrid contribution 1.671 -1.326 -0.569 2.208 sum -10.580 11.083 4.714 16.031 Atomic orbital electron populations 1.20965 0.88894 1.03904 1.03686 1.20012 0.97679 0.91647 0.98983 1.21367 0.94140 0.98244 1.00209 1.21432 0.95005 0.98019 0.99460 1.21293 1.00454 0.92777 1.01060 1.20995 0.94780 0.98111 1.01005 1.19923 0.93388 0.95054 1.01673 1.19922 0.93302 0.83175 0.95014 0.87671 1.22211 1.01609 1.02608 0.94990 1.44848 1.08436 1.22461 1.61871 1.17428 0.91976 0.88501 0.96799 1.20428 0.90400 1.00403 1.04768 1.20812 1.00595 0.94113 1.02590 1.17336 0.90116 0.87659 1.00609 1.91380 1.84763 1.56610 1.80675 1.20852 0.94315 1.02270 1.09268 1.19101 0.84862 0.94999 0.98536 1.83866 1.12518 1.42106 1.73876 1.21602 0.89338 0.93785 1.43763 0.89053 1.26357 0.96406 1.01504 0.97052 1.70141 1.09604 1.29378 1.45879 0.84769 0.76899 0.76333 0.79032 1.18660 1.19430 1.18523 0.89326 0.89846 0.90990 0.83041 0.83723 0.85928 0.88580 0.91763 0.94051 0.89216 0.76986 0.81847 0.82312 0.86131 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.41 71.24 0.67 -1.00 16 2 C -0.08 -1.78 5.88 -19.87 -0.12 -1.89 16 3 C -0.12 -2.38 9.70 22.27 0.22 -2.17 16 4 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 5 C -0.14 -3.82 10.05 22.27 0.22 -3.59 16 6 C -0.13 -4.17 9.25 22.27 0.21 -3.97 16 7 C -0.10 -2.74 5.05 -19.87 -0.10 -2.84 16 8 C 0.19 5.16 2.08 44.25 0.09 5.26 16 9 H 0.11 2.44 4.27 -2.39 -0.01 2.43 16 10 C -0.16 -3.68 9.50 71.98 0.68 -2.99 16 11 N -0.74 -27.65 5.12 -321.95 -1.65 -29.30 16 12 C 0.16 6.25 6.67 38.27 0.26 6.51 16 13 C -0.14 -4.34 9.21 22.38 0.21 -4.13 16 14 C -0.16 -5.19 10.02 22.34 0.22 -4.96 16 15 C 0.06 2.52 7.29 22.37 0.16 2.68 16 16 F -0.16 -5.93 17.26 44.97 0.78 -5.15 16 17 C -0.25 -11.40 9.11 22.41 0.20 -11.20 16 18 C 0.08 3.82 6.67 22.69 0.15 3.97 16 19 O -0.22 -12.56 9.00 -22.92 -0.21 -12.76 16 20 C -0.41 -23.72 9.44 67.91 0.64 -23.08 16 21 H 0.09 5.03 5.29 -2.91 -0.02 5.02 16 22 C -0.01 -0.84 5.49 84.82 0.47 -0.37 16 23 N -0.91 -54.59 13.67 21.61 0.30 -54.29 16 24 Si 1.01 43.41 29.55 68.60 2.03 45.43 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.91 8.09 -2.38 -0.02 0.89 16 30 H 0.07 1.01 6.02 -2.39 -0.01 1.00 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.10 3.60 6.09 -2.91 -0.02 3.59 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.57 7.95 -2.39 -0.02 1.55 16 38 H 0.39 17.03 5.65 -92.71 -0.52 16.51 16 39 H 0.16 3.81 6.16 -2.91 -0.02 3.79 16 40 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.12 5.85 5.70 -2.91 -0.02 5.84 16 42 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -69.22 351.01 6.20 -63.02 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: 0.54 Total: 39.25 kcal Atomic # 6 Polarization: -50.62 SS G_CDS: 4.41 Total: -46.21 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.35 Total: -83.59 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.21 Total: -12.76 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.78 Total: -5.15 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.22 6.20 -63.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130493682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.389 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds